BAC Information

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BAC

Clone NameB6Ng01-246L03
Chromosome5 (Build37)
Map Location 13,562,943 - 13,564,089
singlet/doubletsinglet
Overlap geneSema3a
Upstream geneSema3d, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246L03.bB6Ng01-246L03.g
ACCGA055241GA055242
length1,1511,081
definitionB6Ng01-246L03.b B6Ng01-246L03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgctaatcaggttgtccttttggccatcacacccctcagttatt
caaaagctaagaattctttgactttttttctgtgggtgtgactaagactt
atacataacctttcaccccagtactcaagaggttcatccccagacacagc
aggtcctgacacgtgtcctactcacctaagggctagtgccttccccttct
ctattgttctcactaagtcgataaggcttgttcttctgcctcatccttcg
gaataactactcaaggttttagtgaccggaccaccattatccctgtgtgt
cagaggttatgttcatgcagttcctggcccaggtcttttttttttttatc
aatcctaactaaaagtaacatttctaatcaatataacatttatggacaat
aatttacacaatgataaggcttacatttgaaatataactattattttaat
ttcacttcagcatcttaattgatgaattcaagtaaagtatgttttcatta
ctttattagatataggatatttagtactctcattttctctgatttctaac
attatttatgagaaaattaaatatttcatgttttataaaattgctcctgc
taatagtgctctaagaaaatcttcaataagatttgagaataataaatgac
tagacgaaatacttttggttatgagaaaacaaatgagatttataaaaata
acatatttattccagctcttagtaacaaattttccttttttttcttagta
gacaattttatattcttgtggctgacataactccatgtcttaaattctct
gctgaaaatgccttttaatatgaatataaattatatatgtgaaatcaata
atagcaattaaaatgtagaaatttactatattctggacatttttatatga
gaattgttatactagaatagatatacacacccacacacacagtatagata
tacacagcccaattatttttcccatttcaatgataaaattatgttatgta
ctggttccagtatttagtaccatgacctagtactaactccactgttcact
ataaatgttatgagaaactacatcagcccagccacttgtgcctccaatgc
taagccagagtagaagaagagaatgtggtgaaatttattaaagtgacgct
c
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaaaaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaagaacactccttcagtgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaaattggacatagtactaccggaggatcccgcaatacctctcctggg
catatatccagaagatgtcccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgtccctcaacagaggaatggatacaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaattcacaaaattcctaggca
aatggttggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aagaactcaaatgatatgactcactgaatagtggatattaacccagaaac
ttagtatagtgagatataaggtacaatatgtacaacatatgaaactgaag
aagaacgaagaccaaagtgtggacactttgctcattcttagaattgaaac
agtcacccctggaaggagttacagagacaactttggaactgatacaaaaa
gatggtccatctagagactgccatatccaggggatccatcccttcattag
cctccaagcaatgacaccactgcatacaataacaaagccttttgttgcaa
ggacgggtgttatagcttgttccgttgtgagactaggtgcggggcctaag
caaccacagaagtggcatgcatcacattcaactatttgaaatggaatcac
tcgcaccccccaatggaaggagcaagagaaagtatcccaacgaagctgaa
tggaatctccaaccctcatcgcaggaacaacatatgaactaacaacaccc
cagagcatcttgattctgcttcttatgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13562943_13564089
seq2: B6Ng01-246L03.b_47_1197

seq1  GAATTCTGCTAATCAGGTTGTCCTTTTGGCCATCACACCCCTCAGTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTAATCAGGTTGTCCTTTTGGCCATCACACCCCTCAGTTATT  50

seq1  CAAAAGCTAAGAATTCTTTGACTTTTTTTCTGTGGGTGTGACTAAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTAAGAATTCTTTGACTTTTTTTCTGTGGGTGTGACTAAGACTT  100

seq1  ATACATAACCTTTCACCCCAGTACTCAAGAGGTTCATCCCCAGACACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAACCTTTCACCCCAGTACTCAAGAGGTTCATCCCCAGACACAGC  150

seq1  AGGTCCTGACACGTGTCCTACTCACCTAAGGGCTAGTGCCTTCCCCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGACACGTGTCCTACTCACCTAAGGGCTAGTGCCTTCCCCTTCT  200

seq1  CTATTGTTCTCACTAAGTCGATAAGGCTTGTTCTTCTGCCTCATCCTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTCTCACTAAGTCGATAAGGCTTGTTCTTCTGCCTCATCCTTCG  250

seq1  GAATAACTACTCAAGGTTTTAGTGACCGGACCACCATTATCCCTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTACTCAAGGTTTTAGTGACCGGACCACCATTATCCCTGTGTGT  300

seq1  CAGAGGTTATGTTCATGCAGTTCCTGGCCCAGGTCTTTTTTTTTTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTATGTTCATGCAGTTCCTGGCCCAGGTCTTTTTTTTTTTTATC  350

seq1  AATCCTAACTAAAAGTAACATTTCTAATCAATATAACATTTATGGACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACTAAAAGTAACATTTCTAATCAATATAACATTTATGGACAAT  400

seq1  AATTTACACAATGATAAGGCTTACATTTGAAATATAACTATTATTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACAATGATAAGGCTTACATTTGAAATATAACTATTATTTTAAT  450

seq1  TTCACTTCAGCATCTTAATTGATGAATTCAAGTAAAGTATGTTTTCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCAGCATCTTAATTGATGAATTCAAGTAAAGTATGTTTTCATTA  500

seq1  CTTTATTAGATATAGGATATTTAGTACTCTCATTTTCTCTGATTTCTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAGATATAGGATATTTAGTACTCTCATTTTCTCTGATTTCTAAC  550

seq1  ATTATTTATGAGAAAATTAAATATTTCATGTTTTATAAAATTGCTCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATGAGAAAATTAAATATTTCATGTTTTATAAAATTGCTCCTGC  600

seq1  TAATAGTGCTCTAAGAAAATCTTCAATAAGATTTGAGAATAATAAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTGCTCTAAGAAAATCTTCAATAAGATTTGAGAATAATAAATGAC  650

seq1  TAGACGAAATACTTTTGGTTATGAGAAAACAAATGAGATTTATAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGAAATACTTTTGGTTATGAGAAAACAAATGAGATTTATAAAAATA  700

seq1  ACATATTTATTCCAGCTCTTAGTAACAAATTTTCCTTTTTTTTCTTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTATTCCAGCTCTTAGTAACAAATTTTCCTTTTTTTTCTTAGTA  750

seq1  GACAATTTTATATTCTTGTGGCTGACATAACTCCATGTCTTAAATTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTTATATTCTTGTGGCTGACATAACTCCATGTCTTAAATTCTCT  800

seq1  GCTGAAAATGCCTTTTAATATGAATATAAATTATATATGTGAAATCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAATGCCTTTTAATATGAATATAAATTATATATGTGAAATCAATA  850

seq1  ATAGCAATTAAAATGTAGAAA-TTACTATATTCTGGACATTTTTATATGA  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAGCAATTAAAATGTAGAAATTTACTATATTCTGGACATTTTTATATGA  900

seq1  GAATTGTTATACTAGAATAGATATACACA-CCACACACACAGTATAGATA  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTGTTATACTAGAATAGATATACACACCCACACACACAGTATAGATA  950

seq1  TACACAG-CCAATTATTTTTCCCATTTCAATGATAAAATTATGTTATGTA  997
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCCCAATTATTTTTCCCATTTCAATGATAAAATTATGTTATGTA  1000

seq1  CTGGTTCCAGTATTTAGTACCATGAACTAGTACTAACT-CACTGTTCACT  1046
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CTGGTTCCAGTATTTAGTACCATGACCTAGTACTAACTCCACTGTTCACT  1050

seq1  ATAAATTGTTATGAGAAACTACATCAG-CCAG-CAC-TGTG-CTCCATTG  1092
      ||||| ||||||||||||||||||||| |||| ||| |||| ||||| ||
seq2  ATAAA-TGTTATGAGAAACTACATCAGCCCAGCCACTTGTGCCTCCAATG  1099

seq1  CTTAAAGCAGGAGTAGAAGAAGAGAATGTGGTG-AATTTATTAAAAGTGA  1141
      ||  ||||  ||||||||||||||||||||||| |||||||| |||||||
seq2  CT--AAGCCAGAGTAGAAGAAGAGAATGTGGTGAAATTTATT-AAAGTGA  1146

seq1  CAGCTC  1147
      | ||||
seq2  C-GCTC  1151