BAC Information

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BAC

Clone NameB6Ng01-247A19
Chromosome5 (Build37)
Map Location 31,365,110 - 31,511,805
singlet/doubletdoublet
Overlap geneCad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g
Upstream geneTyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik
Downstream geneENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247A19.bB6Ng01-247A19.g
ACCGA055493GA055494
length392257
definitionB6Ng01-247A19.b B6Ng01-247A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,511,414 - 31,511,805)(31,365,110 - 31,365,355)
sequence
gaattcccttgtaaacctaatttctctaagctgaggatagcaagtatgtt
tagtgcagtattgtctggtactgttaaagtcttctgtaggagtctcttta
tttttcaggtttgtgaggtcctaaggaggttctcttgctatactcttgta
ttttctttcttgaaaatatttattcactatttattcagagatggatttag
aaatagctttatctttttttttttttttttttttttttttttgggggggg
tgtgtgtgtattttggttttctccagacagggtttctctgtgtagtcctg
gctgtcctggaactcacgctgtagaccagtagaccaggctagcctcgaac
tcaagaaattcgcctgcctctgcctcctaaatgctgggatta
cagcactcagaaggcagaggcaggtggatctgtcaatctgagagtagcct
ggtttgtagagccagttccagggtggccagggctacatagagaaacactg
tcttggaaagcagataagtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtg
tgagagagagagagagagagagagagagagagagcgcatagagctttctc
agagataatgggtacatttcaagttagttatcctcactaggagcagagag
agagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31511414_31511805
seq2: B6Ng01-247A19.b_47_438 (reverse)

seq1  TAATCCCAGCATTTAGGAGGCAGAGGCAGGCGAATTTCTTGAGTTCGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCATTTAGGAGGCAGAGGCAGGCGAATTTCTTGAGTTCGAGG  50

seq1  CTAGCCTGGTCTACTGGTCTACAGCGTGAGTTCCAGGACAGCCAGGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGGTCTACTGGTCTACAGCGTGAGTTCCAGGACAGCCAGGACTA  100

seq1  CACAGAGAAACCCTGTCTGGAGAAAACCAAAATACACACACACACACACC  150
      ||||||||||||||||||||||||||||||||||||||||||| | | ||
seq2  CACAGAGAAACCCTGTCTGGAGAAAACCAAAATACACACACACCCCCCCC  150

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAGCTATTTCTAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAGCTATTTCTAAATCC  200

seq1  ATCTCTGAATAAATAGTGAATAAATATTTTCAAGAAAGAAAATACAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAATAAATAGTGAATAAATATTTTCAAGAAAGAAAATACAAGAG  250

seq1  TATAGCAAGAGAACCTCCTTAGGACCTCACAAACCTGAAAAATAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAGAGAACCTCCTTAGGACCTCACAAACCTGAAAAATAAAGAGA  300

seq1  CTCCTACAGAAGACTTTAACAGTACCAGACAATACTGCACTAAACATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACAGAAGACTTTAACAGTACCAGACAATACTGCACTAAACATACT  350

seq1  TGCTATCCTCAGCTTAGAGAAATTAGGTTTACAAGGGAATTC  392
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCTCAGCTTAGAGAAATTAGGTTTACAAGGGAATTC  392

seq1: chr5_31365110_31365355
seq2: B6Ng01-247A19.g_73_318

seq1  CAGCACTCAGAAGGCAGAGGCAGGTGGATCTGTCAATCTGAGAGTAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCAGAAGGCAGAGGCAGGTGGATCTGTCAATCTGAGAGTAGCCT  50

seq1  GGTTTGTAGAGCCAGTTCCAGGGTGGCCAGGGCTACATAGAGAAACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAGAGCCAGTTCCAGGGTGGCCAGGGCTACATAGAGAAACACTG  100

seq1  TCTTGGAAAGCAGATAAGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAAGCAGATAAGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTG  150

seq1  TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCATAGAGCTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCATAGAGCTTTCTC  200

seq1  AGAGATAATGGGTACATTTCAAGTTAGTTATCCTCACTAGGAGCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAATGGGTACATTTCAAGTTAGTTATCCTCACTAGGAGCAG  246