BAC Information

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BAC

Clone NameB6Ng01-247E06
Chromosome5 (Build37)
Map Location 125,537,199 - 125,705,907
singlet/doubletdoublet
Overlap geneNcor2
Upstream geneAbcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik
Downstream geneScarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247E06.bB6Ng01-247E06.g
ACCGA055645GA055646
length5981,178
definitionB6Ng01-247E06.b B6Ng01-247E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,537,199 - 125,537,795)(125,704,759 - 125,705,907)
sequence
gaattcttgaaggtttctcacccacctcacccagctcaggagtgggtctg
aagcctcagcttcccatagtagcagcattgggggggagggggacgcgcca
tggtttgggggaggtgcgggatagccaggccacctgctggcctacagtga
ccacaagagccacgtggctccagagcagcttctcagggctcctcaaggac
aggaggcagggagggccagggctcaggatcaagtgtaactcagcccctga
cctttccctccacccgcgccagcagcagctgccacttccagaacctggcg
gctggggctgcgtttatttatattacccgagtgccgtccaagagggccca
acaaacacgtcaggccgagggatcgcaggcccggaaccccagggcaggtc
tccatttggagctgttgggggtggggtgcaatgaagacttgggaggggag
ggtggcccgaccccggggaacagacatttccaaattcagttaggtcaata
gggagtcagaacagctgggtctcccaactaactcagcctataaaagctag
aaactgtcagggtgggggggatgacgttcatctgtttcccgaacactt
gaattcaggcatcatactgaccacttaggtgcagggggttacatcaaggc
agaggcaggtccccaggaagcaggaggaagctgagatcccagaggcttcc
cccttggccaactctatggagaatcctggtcctggaatggggtggcaggg
gcttgagctcatttgcaatcctctttcctgtgacaaacaggacacaagca
gcctctgcctaaggctgggaactatgttcccctggcttctccttccagcc
cattgatggatactgggtcaagttcacacaaatccagcttcaccctctgt
ggcctcctttacattgcccctctccagatggcgcaggcccctcccaggga
gaatcctagcaatgcctaaggtcagaggtcatccttggatctctgccgac
ttccagtttccacaggccttggatcttgctggccttcaggccctgctgac
ctcaagctgccactggcctgggggccctgcagctcttcagtctcccgata
gccttgggtccccactgacctcaggtccctgctgaccttggggttccact
ggcctctagtccttacagtcctgttctgtgtactgtgttgtgggtcctgc
aggctccagtgccattgagctggggcttgtcttcccaaagggacagccca
gatctgtgtttagggtcgtgaacacaggtaaacagacagatatagataga
tatagatctatagatatataggcttgtgtgcacatatgcatacacacata
aatgcagatacgcagtcatcaccactgacccttgcagccaggctatgcca
ccatgcacctgatttgtgtccctctgacctcattctcatgcgtctccgct
cggatgctcctgtctcttaagacttgggggactcctgggaagagggcact
tctgtgagctactagcttcctttcctaaccctacagcggagcagagccac
tgaagaacacctccaaagaacacaaagattctttccttcgctgtcttctg
cctttcctcacccaggcccctccccccaccccttagagtggggaccttgg
ctcaccattcacttgcaatcagaactgcaggcacctccactgctacaact
ccgcccttgaactctgggtaaggttggagcatcccctcggaacggttcca
cggtcaaggtggcctctcttggtgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125537199_125537795
seq2: B6Ng01-247E06.b_47_644

seq1  GAATTCTTGAAGGTTTCTCACCCACCTCACCCAGCTCAGGAGTGGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAGGTTTCTCACCCACCTCACCCAGCTCAGGAGTGGGTCTG  50

seq1  AAGCCTCAGCTTCCCATAGTAGCAGCATTGGGGGGGAGGGGGACGCGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCAGCTTCCCATAGTAGCAGCATTGGGGGGGAGGGGGACGCGCCA  100

seq1  TGGTTTGGGGGAGGTGCGGGATAGCCAGGCCACCTGCTGGCCTACAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGGGGAGGTGCGGGATAGCCAGGCCACCTGCTGGCCTACAGTGA  150

seq1  CCACAAGAGCCACGTGGCTCCAGAGCAGCTTCTCAGGGCTCCTCAAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGAGCCACGTGGCTCCAGAGCAGCTTCTCAGGGCTCCTCAAGGAC  200

seq1  AGGAGGCAGGGAGGGCCAGGGCTCAGGATCAAGTGTAACTCAGCCCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGGGAGGGCCAGGGCTCAGGATCAAGTGTAACTCAGCCCCTGA  250

seq1  CCTTTCCCTCCACCCGCGCCAGCAGCAGCTGCCACTTCCAGAACCTGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTCCACCCGCGCCAGCAGCAGCTGCCACTTCCAGAACCTGGCG  300

seq1  GCTGGGGCTGCGTTTATTTATATTACCCGAGTGCCGTCCAAGAGGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCTGCGTTTATTTATATTACCCGAGTGCCGTCCAAGAGGGCCCA  350

seq1  ACAAACACGTCAGGCCGAGGGATCGCAGGCCCGGAACCCCAGGGCAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACGTCAGGCCGAGGGATCGCAGGCCCGGAACCCCAGGGCAGGTC  400

seq1  TCCATTTGGAGCTGTTGGGGGTGGGGTGCAATGAAGACTTGGGAGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGGAGCTGTTGGGGGTGGGGTGCAATGAAGACTTGGGAGGGGAG  450

seq1  GGTGGCCCGACCCCGGGGAACAGACATTTCCAAATTCAGTTAGGTCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCGACCCCGGGGAACAGACATTTCCAAATTCAGTTAGGTCAATA  500

seq1  GGGAGTCAGAACAGCTGGGTCTCCCAACTAACTCAGCCTATAAAAGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAGAACAGCTGGGTCTCCCAACTAACTCAGCCTATAAAAGCTAG  550

seq1  AAACTGTCAGGGTGGGGGGGATGACGCTCAGCTG-TTCCCGAACACGT  597
      |||||||||||||||||||||||||| ||| ||| ||||||||||| |
seq2  AAACTGTCAGGGTGGGGGGGATGACGTTCATCTGTTTCCCGAACACTT  598

seq1: chr5_125704759_125705907
seq2: B6Ng01-247E06.g_68_1245 (reverse)

seq1  ------------GAAG-CACTTTGAACGTGGAA-CGTTCTGAGGGGATGC  36
                  || | ||| |||| ||||||| ||||| ||||||||||
seq2  GAAGCACCAAGAGAGGCCACCTTGACCGTGGAACCGTTCCGAGGGGATGC  50

seq1  TCCAAC--TTCACAGAGT--CAGGGCGGGGTGGTGGCAGTGG-GGTGCCT  81
      ||||||  | | ||||||   ||||||| || || ||||||| |||||||
seq2  TCCAACCTTACCCAGAGTTCAAGGGCGGAGTTGTAGCAGTGGAGGTGCCT  100

seq1  GCAGTTCTGATGGC-AGTG-ATGGTGAGCCAGGGTCCCCACTTCTAGGGG  129
      ||||||||||| || |||| ||||||||||| ||||||||||   |||||
seq2  GCAGTTCTGATTGCAAGTGAATGGTGAGCCAAGGTCCCCACTCTAAGGGG  150

seq1  T-GGGGGAGGGGCCTGGGTGAGG-AAGGCAG-AGACAGCGAAGG-AAGAA  175
      | ||||||||||||||||||||| ||||||| |||||||||||| |||||
seq2  TGGGGGGAGGGGCCTGGGTGAGGAAAGGCAGAAGACAGCGAAGGAAAGAA  200

seq1  TCTTTGTGTTCTTTGGAGGTGTTCTTCAGTGGCTCTGCTCCGCTGTA-GG  224
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTTGTGTTCTTTGGAGGTGTTCTTCAGTGGCTCTGCTCCGCTGTAGGG  250

seq1  TTAGG-AAGGAAGCTAGTAGCTCACAG-AGTGCCCTCTTCCCAGGAGT-C  271
      ||||| ||||||||||||||||||||| |||||||||||||||||||| |
seq2  TTAGGAAAGGAAGCTAGTAGCTCACAGAAGTGCCCTCTTCCCAGGAGTCC  300

seq1  CCCAAGTCTTAAGAGACAGGAGCATCCGAGCGGAGACGCATGAGAATGAG  321
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCTTAAGAGACAGGAGCATCCGAGCGGAGACGCATGAGAATGAG  350

seq1  GTCAGAGGGACACAAATCAGGTGCATGGTGGCATAGCCTGGCTGCAAGGG  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGGACACAAATCAGGTGCATGGTGGCATAGCCTGGCTGCAAGGG  400

seq1  TCAGTGGTGATGACTGCGTATCTGCATTTATGTGTGTATGCATATGTGCA  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTGATGACTGCGTATCTGCATTTATGTGTGTATGCATATGTGCA  450

seq1  CACAAGCCTATATATCTATAGATCTATATCTATCTATATCTGTCTGTTTA  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCTATATATCTATAGATCTATATCTATCTATATCTGTCTGTTTA  500

seq1  CCTGTGTTCACGACCCTAAACACAGATCTGGGCTGTCCCTTTGGGAAGAC  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTCACGACCCTAAACACAGATCTGGGCTGTCCCTTTGGGAAGAC  550

seq1  AAGCCCCAGCTCAATGGCACTGGAGCCTGCAGGACCCACAACACAGTACA  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAGCTCAATGGCACTGGAGCCTGCAGGACCCACAACACAGTACA  600

seq1  CAGAACAGGACTGTAAGGACTAGAGGCCAGTGGAACCCCAAGGTCAGCAG  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGGACTGTAAGGACTAGAGGCCAGTGGAACCCCAAGGTCAGCAG  650

seq1  GGACCTGAGGTCAGTGGGGACCCAAGGCTATCGGGAGACTGAAGAGCTGC  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGGTCAGTGGGGACCCAAGGCTATCGGGAGACTGAAGAGCTGC  700

seq1  AGGGCCCCCAGGCCAGTGGCAGCTTGAGGTCAGCAGGGCCTGAAGGCCAG  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCCCAGGCCAGTGGCAGCTTGAGGTCAGCAGGGCCTGAAGGCCAG  750

seq1  CAAGATCCAAGGCCTGTGGAAACTGGAAGTCGGCAGAGATCCAAGGATGA  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCAAGGCCTGTGGAAACTGGAAGTCGGCAGAGATCCAAGGATGA  800

seq1  CCTCTGACCTTAGGCATTGCTAGGATTCTCCCTGGGAGGGGCCTGCGCCA  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCTTAGGCATTGCTAGGATTCTCCCTGGGAGGGGCCTGCGCCA  850

seq1  TCTGGAGAGGGGCAATGTAAAGGAGGCCACAGAGGGTGAAGCTGGATTTG  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGGGGCAATGTAAAGGAGGCCACAGAGGGTGAAGCTGGATTTG  900

seq1  TGTGAACTTGACCCAGTATCCATCAATGGGCTGGAAGGAGAAGCCAGGGG  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTTGACCCAGTATCCATCAATGGGCTGGAAGGAGAAGCCAGGGG  950

seq1  AACATAGTTCCCAGCCTTAGGCAGAGGCTGCTTGTGTCCTGTTTGTCACA  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTTCCCAGCCTTAGGCAGAGGCTGCTTGTGTCCTGTTTGTCACA  1000

seq1  GGAAAGAGGATTGCAAATGAGCTCAAGCCCCTGCCACCCCATTCCAGGAC  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGATTGCAAATGAGCTCAAGCCCCTGCCACCCCATTCCAGGAC  1050

seq1  CAGGATTCTCCATAGAGTTGGCCAAGGGGGAAGCCTCTGGGATCTCAGCT  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCTCCATAGAGTTGGCCAAGGGGGAAGCCTCTGGGATCTCAGCT  1100

seq1  TCCTCCTGCTTCCTGGGGACCTGCCTCTGCCTTGATGTAACCCCCTGCAC  1121
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCTTCCTGGGGACCTGCCTCTGCCTTGATGTAACCCCCTGCAC  1150

seq1  CTAAGTGGTCAGTATGATGCCTGAATTC  1149
      ||||||||||||||||||||||||||||
seq2  CTAAGTGGTCAGTATGATGCCTGAATTC  1178