BAC Information

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BAC

Clone NameB6Ng01-247E08
Chromosome5 (Build37)
Map Location 148,364,094 - 148,581,402
singlet/doubletdoublet
Overlap geneFlt1
Upstream geneLOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247E08.bB6Ng01-247E08.g
ACCGA055649GA055650
length904610
definitionB6Ng01-247E08.b B6Ng01-247E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,364,094 - 148,364,987)(148,580,798 - 148,581,402)
sequence
gaattcaacctggaccttcgaatttggattcttacctgcggggagtcact
ccagagaccgggcagcagttgtgacctcagcccccctggcctcctcacca
ctaggaaatacatctgaccctgcagtgccctgcctgtgctgccgagccat
tttcagtgcttctttcaaccactggtagtcattttagctcacaatgggga
gggttgccagggggtggggatggggggcagcagctggagagatggctcag
cagttaggccccaggttcaattcccagcacccacatggcggctcactact
atccataacactgtggtgcacaacatacatgggggcgagggggacgctca
gcagttaagcaccaactgttcttccaaaggacctgggttcaattcacaac
acccagaggcaggcagaataccaatgtacataaaaataaatctttatttt
ttaaaaacatcaattcacagtgggtttctcttggtataacttcaaaataa
actgagcatctgctgcagtgtgttttagagatgttactagtacaactccc
ctggttttgtttattgtattttacttgggggttgtcttagtcagggtttc
tattcctgcacaaacatcatgaccaaaaagcaagttgggaaagaaagggt
ttattcagcttacacttccatactgctgttcattaccaaaggaagtcagg
actggaaactcaagcaggtcagaaagcaggagctgatgcagaggtcatgg
aagggatgttctttactgggcttgcttctcctggcctgctcagcctgctc
tcttataggaactcaagaactaccagcccagagatggtcccactccacaa
gggtcctttcccccttgattcactaattggaaaaaatgggttacaagttg
gatc
gaattcagagtcagaagttagcactgtcaacaccaccacgcccacacaag
cctctcctcaggagcccctggtgccttggttctcatgtaggctcttcctg
cactaaagcccaccaccctggacaacagaaacccaaccaggcatctctct
tgtttccagaggctggaagctaaaactagaaattccacgttataaggccc
agtacttacaatactgtgtgcatcttcgacacagttgtgacgtctttttc
gtccaaatgagacttggcagctctctagtgttatacagaggacctgaacc
tatcatcatgtttggttagcaactaagagacttttaggttttgcaaaaat
ctgtggtgaatgtgttctctgagtatgtttttaaaggacttttacaaaga
agtaggaatgtggttgaagttattactactaatgctatgtgtagtcccga
ataaaagagatcaaattggcctatgacatttatttacttattatttactt
atttattcattgtgaattgctcttttttattttatagatagatgatagat
agatagatagatagatagatagatagatagatagatgataggtaggtagg
ttggtttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148364094_148364987
seq2: B6Ng01-247E08.b_44_947

seq1  GAATTCAACCTGGACCTTCGAATTTGGATTCTTACCTGCGGGGAGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTGGACCTTCGAATTTGGATTCTTACCTGCGGGGAGTCACT  50

seq1  CCAGAGACCGGGCAGCAGTTGTGACCTCAGCCCCCCTGGCCTCCTCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACCGGGCAGCAGTTGTGACCTCAGCCCCCCTGGCCTCCTCACCA  100

seq1  CTAGGAAATACATCTGACCCTGCAGTGCCCTGCCTGTGCTGCCGAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAATACATCTGACCCTGCAGTGCCCTGCCTGTGCTGCCGAGCCAT  150

seq1  TTTCAGTGCTTCTTTCAACCACTGGTAGTCATTTTAGCTCACAATGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGCTTCTTTCAACCACTGGTAGTCATTTTAGCTCACAATGGGGA  200

seq1  GGGTTGCCAGGGGGTGGGGATGGGGGGCAGCAGCTGGAGAGATGGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCCAGGGGGTGGGGATGGGGGGCAGCAGCTGGAGAGATGGCTCAG  250

seq1  CAGTTAGGCCCCAGGTTCAATTCCCAGCACCCACATGGCGGCTCACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGCCCCAGGTTCAATTCCCAGCACCCACATGGCGGCTCACTACT  300

seq1  ATCCATAACACTGTGGTGCACAACATACATGGGGGCGAGGGGGACGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAACACTGTGGTGCACAACATACATGGGGGCGAGGGGGACGCTCA  350

seq1  GCAGTTAAGCACCAACTGTTCTTCCAAAGGACCTGGGTTCAATTCACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGCACCAACTGTTCTTCCAAAGGACCTGGGTTCAATTCACAAC  400

seq1  ACCCAGAGGCAGGCAGAATACCAATGTACATAAAAATAAATCTTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGGCAGGCAGAATACCAATGTACATAAAAATAAATCTTTATTTT  450

seq1  TTAAAAACATCAATTCACAGTGGGTTTCTCTTGGTATAACTTCAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACATCAATTCACAGTGGGTTTCTCTTGGTATAACTTCAAAATAA  500

seq1  ACTGAGCATCTGCTGCAGTGTGTTTTAGAGATGTTACTAGTACAACTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCATCTGCTGCAGTGTGTTTTAGAGATGTTACTAGTACAACTCCC  550

seq1  CTGGTTTTGTTTATTGTATTTTACTTGGGGGTTGTCTTAGTCAGGGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGTTTATTGTATTTTACTTGGGGGTTGTCTTAGTCAGGGTTTC  600

seq1  TATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGAAGGAAAGGGT  650
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TATTCCTGCACAAACATCATGACCAAAAAGCAAGTTGGGAAAGAAAGGGT  650

seq1  TTATTCAGCTTACACTTCCATACTGCTGTTCATTACCAAAGGAAGTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGCTTACACTTCCATACTGCTGTTCATTACCAAAGGAAGTCAGG  700

seq1  ACTGG-AACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGTCATGG  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGTCATGG  750

seq1  -AGGGATGTTCTTTACT-GGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTC  797
       |||||||||||||||| |||||||||| |||||| ||||||||||||||
seq2  AAGGGATGTTCTTTACTGGGCTTGCTTCTCCTGGCCTGCTCAGCCTGCTC  800

seq1  TCTTATA-GAAC-CAAG-ACTACCAGCCCAGAGATGGTCCCAC-CCACAA  843
      ||||||| |||| |||| ||||||||||||||||||||||||| ||||||
seq2  TCTTATAGGAACTCAAGAACTACCAGCCCAGAGATGGTCCCACTCCACAA  850

seq1  GGGGCCTTTCCCCCTTGA-TCACTAATT-GAGAAAATGGTTTAC-AGTTG  890
      ||| |||||||||||||| ||||||||| || ||||||| |||| |||||
seq2  GGGTCCTTTCCCCCTTGATTCACTAATTGGAAAAAATGGGTTACAAGTTG  900

seq1  GATC  894
      ||||
seq2  GATC  904

seq1: chr5_148580798_148581402
seq2: B6Ng01-247E08.g_68_668 (reverse)

seq1  ACCTACCTACCTATCATCTATCTATCTATCTATCTATCTATCTATCTATC  50
      |||||||||||||||    |||||||||||||||||||||||||||||||
seq2  ACCTACCTACCTATC----ATCTATCTATCTATCTATCTATCTATCTATC  46

seq1  TATCTATCTATCATCTATCTATAAAATAAAAAAGAGCAATTCACAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCATCTATCTATAAAATAAAAAAGAGCAATTCACAATGAA  96

seq1  TAAATAAGTAAATAATAAGTAAATAAATGTCATAGGCCAATTTGATCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTAAATAATAAGTAAATAAATGTCATAGGCCAATTTGATCTCT  146

seq1  TTTATTCGGGACTACACATAGCATTAGTAGTAATAACTTCAACCACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCGGGACTACACATAGCATTAGTAGTAATAACTTCAACCACATTC  196

seq1  CTACTTCTTTGTAAAAGTCCTTTAAAAACATACTCAGAGAACACATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTTTGTAAAAGTCCTTTAAAAACATACTCAGAGAACACATTCAC  246

seq1  CACAGATTTTTGCAAAACCTAAAAGTCTCTTAGTTGCTAACCAAACATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTTTGCAAAACCTAAAAGTCTCTTAGTTGCTAACCAAACATGA  296

seq1  TGATAGGTTCAGGTCCTCTGTATAACACTAGAGAGCTGCCAAGTCTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTTCAGGTCCTCTGTATAACACTAGAGAGCTGCCAAGTCTCATT  346

seq1  TGGACGAAAAAGACGTCACAACTGTGTCGAAGATGCACACAGTATTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGAAAAAGACGTCACAACTGTGTCGAAGATGCACACAGTATTGTAA  396

seq1  GTACTGGGCCTTATAACGTGGAATTTCTAGTTTTAGCTTCCAGCCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGCCTTATAACGTGGAATTTCTAGTTTTAGCTTCCAGCCTCTGG  446

seq1  AAACAAGAGAGATGCCTGGTTGGGTTTCTGTTGTCCAGGGTGGTGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGAGATGCCTGGTTGGGTTTCTGTTGTCCAGGGTGGTGGGCTT  496

seq1  TAGTGCAGGAAGAGCCTACATGAGAACCAAGGCACCAGGGGCTCCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGGAAGAGCCTACATGAGAACCAAGGCACCAGGGGCTCCTGAGG  546

seq1  AGAGGCTTGTGTGGGCGTGGTGGTGTTGACAGTGCTAACTTCTGACTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTGTGTGGGCGTGGTGGTGTTGACAGTGCTAACTTCTGACTCTG  596

seq1  AATTC  605
      |||||
seq2  AATTC  601