BAC Information

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BAC

Clone NameB6Ng01-247G15
Chromosome5 (Build37)
Map Location 31,342,630 - 31,457,637
singlet/doubletdoublet
Overlap geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17
Upstream geneIl6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Downstream geneGtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G15.bB6Ng01-247G15.g
ACCGA055755GA055756
length1,191814
definitionB6Ng01-247G15.b B6Ng01-247G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,342,630 - 31,343,806)(31,456,831 - 31,457,637)
sequence
gaattcttcatctatatttctaattcaaccacacagagatactttgctta
gtgacccagactggcttctcaagagcacaggaaggagcaagagaggcctt
ctcacctggtcaggggctgcttgcttcagctcggggctcatgctatacat
gttataataggcaaacatgaccagaccaatgaggcagctcatgcagaggg
ccacttgctggcaagggaacactgcatagcaggagctgcaaaagaccagt
gtcaaaataaagagataccattagtactcttacacgaccccctgagcctc
cggaaagtccccagtaagggggtgagaagcctgaaccccgtccccacccc
actgcctttagggagccccttcccatcccttgctccagtccctgcactca
cagcacagcagctctctccgagtgggaactgaggtagcgctgcacctgag
cctgattcactccatacaaggagagcatcatgaagacacctccaaaggcc
aaagtccagaaagtatgacgcacaaaggggtcaggatccaggctgcaaca
aatactacctggtcactgtctcagccaagatgcctatctttctagtaaga
gagatcagtgaatgatagaacagagaatgacacaaggcaaggagccagga
gactcgagatggctcaggaagttggagagaagattccattttcccaaccc
tccctcatctcaggtatgcatccaggcaatgcccaggctttctataaaca
ccagccaggcacccacccatcacctttctccctatttggtattaccaggt
ttctctctacttactaaaaaaggcctgagcccaggctctacagaccctcg
gtgccacagacaccagaaaggggaagcacatacttacttaatcccagaga
tgaggccatgctgggaaagtcacatttccatacatgggcccaagccaccc
actctggctgctcctacaatgatcactaccagctgcccgaggaacatgac
cagtgttttggaacacatctgtccagatgacagccttcagccccacccct
gcaggaaaaagcacatctgttacaaatgtcactcaccagaaggtggacaa
ttacactaccccggaaagccctggacccaatcctgaaacagtggagccga
gaactcctcgcctacttttccagtggggccaacacactcca
gaattcttactctctctaatagaatccatccttcattaatcatacaggaa
ctgactaactgagctgggggtggacagacatcaaataagttgaccttttt
caaggcttggagacgtatacatctttacctacctcaggaagggatttgca
gggagttgggtgttaaaactagagggagattaagattcctaaaatgtttt
tttttttttaaatatagttttatgcctctttgcttaacatgactagaagc
cgggtgtggtggcgcactcctttaatcccagcacttgggaggctaaggca
ggtggatttctgagttggaggccagcctggtctacagagtgtgttccaag
acagccagggctacacagagaaaccttgtcttggaaaaacaacaaacaaa
gcatgactctagaaacccataaagcaaaacaaaccctccattgagttgcc
tcttgtacagccctagaattcaaggagccctgattgcaagacagggtcat
tttacaaaattcatgaccaaacttaagacagctagcacgggcgttctcag
gttctgctaagccagtggttctgaaagttgactgcttgtccagaaagatt
tttcagacaaaacttaaaaatttggtataaagaacaaggaaaaaaaatag
aacaagtctgagttctgctcactttgggagcttgggtatacctgcactac
ttcagcattcaagttttccaaactgagaagggcgtctagacctgactacc
ttccggggagactgacagtctggcctgatagttctggggagaaccgaggg
tgggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31342630_31343806
seq2: B6Ng01-247G15.b_46_1236

seq1  GAATTCTTCATCTATATTTCTAATTCAACCACACAGAGATACTTTGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCTATATTTCTAATTCAACCACACAGAGATACTTTGCTTA  50

seq1  GTGACCCAGACTGGCTTCTCAAGAGCACAGGAAGGAGCAAGAGAGGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCAGACTGGCTTCTCAAGAGCACAGGAAGGAGCAAGAGAGGCCTT  100

seq1  CTCACCTGGTCAGGGGCTGCTTGCTTCAGCTCGGGGCTCATGCTATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGGTCAGGGGCTGCTTGCTTCAGCTCGGGGCTCATGCTATACAT  150

seq1  GTTATAATAGGCAAACATGACCAGACCAATGAGGCAGCTCATGCAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATAGGCAAACATGACCAGACCAATGAGGCAGCTCATGCAGAGGG  200

seq1  CCACTTGCTGGCAAGGGAACACTGCATAGCAGGAGCTGCAAAAGACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCTGGCAAGGGAACACTGCATAGCAGGAGCTGCAAAAGACCAGT  250

seq1  GTCAAAATAAAGAGATACCATTAGTACTCTTACACGACCCCCTGAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATAAAGAGATACCATTAGTACTCTTACACGACCCCCTGAGCCTC  300

seq1  CGGAAAGTCCCCAGTAAGGGGGTGAGAAGCCTGAACCCCGTCCCCACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGTCCCCAGTAAGGGGGTGAGAAGCCTGAACCCCGTCCCCACCCC  350

seq1  ACTGCCTTTAGGGAGCCCCTTCCCATCCCTTGCTCCAGTCCCTGCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTTAGGGAGCCCCTTCCCATCCCTTGCTCCAGTCCCTGCACTCA  400

seq1  CAGCACAGCAGCTCTCTCCGAGTGGGAACTGAGGTAGCGCTGCACCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCAGCTCTCTCCGAGTGGGAACTGAGGTAGCGCTGCACCTGAG  450

seq1  CCTGATTCACTCCATACAAGGAGAGCATCATGAAGACACCTCCAAAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCACTCCATACAAGGAGAGCATCATGAAGACACCTCCAAAGGCC  500

seq1  AAAGTCCAGAAAGTATGACGCACAAAGGGGTCAGGATCCAGGCTGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAGAAAGTATGACGCACAAAGGGGTCAGGATCCAGGCTGCAACA  550

seq1  AATACTACCTGGTCACTGTCTCAGCCAAGATGCCTATCTTTCTAGTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACCTGGTCACTGTCTCAGCCAAGATGCCTATCTTTCTAGTAAGA  600

seq1  GAGATCAGTGAATGATAGAACAGAGAATGACACAAGGCAAGGAGCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGTGAATGATAGAACAGAGAATGACACAAGGCAAGGAGCCAGGA  650

seq1  GACTCGAGATGGCTCAGGAAGTTGGAGAGAAGATTCCATTTTCCCAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGAGATGGCTCAGGAAGTTGGAGAGAAGATTCCATTTTCCCAACCC  700

seq1  TCCCTCATCTCAGGTATGCATCCAGGCAATGCCCAGGCTTTCTATAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCTCAGGTATGCATCCAGGCAATGCCCAGGCTTTCTATAAACA  750

seq1  CCAGCCAGGCACCCACCCATCACCTTTCTCCCTATTTGGTATTACCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGGCACCCACCCATCACCTTTCTCCCTATTTGGTATTACCAGGT  800

seq1  TTCTCTCTACTTACTAAAAAAGGCCTGAGCCCAGGCTCTACAGACCCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTACTTACTAAAAAAGGCCTGAGCCCAGGCTCTACAGACCCTCG  850

seq1  GTGCCACAGACACCAGAAAGGGGAAGCACATACTTACTTAATCCCAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACAGACACCAGAAAGGGGAAGCACATACTTACTTAATCCCAGAGA  900

seq1  TGAGGCCATGCTGGG-AAGTCACA-TTCCATACAT-GGCCCAAGCCACCC  947
      ||||||||||||||| |||||||| |||||||||| ||||||||||||||
seq2  TGAGGCCATGCTGGGAAAGTCACATTTCCATACATGGGCCCAAGCCACCC  950

seq1  ACTCTGGCTGCTCCTACAATGATCACTACCAGCTGCCCGAGGAACATGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCTGCTCCTACAATGATCACTACCAGCTGCCCGAGGAACATGAC  1000

seq1  CAGTG-TTTGGAACACATCTGTCCAGATGACAGCCTTCAGCCC--ACCCT  1044
      ||||| |||||||||||||||||||||||||||||||||||||   ||||
seq2  CAGTGTTTTGGAACACATCTGTCCAGATGACAGCCTTCAGCCCCACCCCT  1050

seq1  GCAGGGAAAAAGCACATCTGTTACAAATGTCAACTCAACCAGAAGGGTGG  1094
      ||| ||||||||||||||||||||||||||| |||| ||||||| |||||
seq2  GCA-GGAAAAAGCACATCTGTTACAAATGTC-ACTC-ACCAGAA-GGTGG  1096

seq1  AC-ATTACACTACCCC-GAAAGCCCCTGAACCATCCCTGAAACAGTGGAG  1142
      || ||||||||||||| ||||||||  || |||  |||||||||||||||
seq2  ACAATTACACTACCCCGGAAAGCCCTGGACCCAATCCTGAAACAGTGGAG  1146

seq1  -CGAGAA--TCTCGTCTACTTT--CA-TGGCG----CACACTCCA  1177
       ||||||   |||| |||||||  || ||| |    |||||||||
seq2  CCGAGAACTCCTCGCCTACTTTTCCAGTGGGGCCAACACACTCCA  1191

seq1: chr5_31456831_31457637
seq2: B6Ng01-247G15.g_68_881 (reverse)

seq1  CCCCCA-CCCCCCACCCTC-GTTCTCCCCAG-ACTATCAGGCCAGACTGT  47
      |||||| |||||||||||| ||||||||||| ||||||||||||||||||
seq2  CCCCCACCCCCCCACCCTCGGTTCTCCCCAGAACTATCAGGCCAGACTGT  50

seq1  CAGTCTCCC--GGAGGTAGTCAGGTCTAGACGCCCTTCTCAGTTTGG-AA  94
      |||||||||  | |||||||||||||||||||||||||||||||||| ||
seq2  CAGTCTCCCCGGAAGGTAGTCAGGTCTAGACGCCCTTCTCAGTTTGGAAA  100

seq1  ACTTGAATGCTGAAGTAGTGCAGGTATACCCAAGCTCCC-AAGTGAGCAG  143
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTTGAATGCTGAAGTAGTGCAGGTATACCCAAGCTCCCAAAGTGAGCAG  150

seq1  AACTCAGACTTGTTCTATTTTTTTTCCTTGTTCTTTATACCAAATTTTTA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGACTTGTTCTATTTTTTTTCCTTGTTCTTTATACCAAATTTTTA  200

seq1  AGTTTTGTCTGAAAAATCTTTCTGGACAAGCAGTCAACTTTCAGAACCAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTCTGAAAAATCTTTCTGGACAAGCAGTCAACTTTCAGAACCAC  250

seq1  TGGCTTAGCAGAACCTGAGAACGCCCGTGCTAGCTGTCTTAAGTTTGGTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGCAGAACCTGAGAACGCCCGTGCTAGCTGTCTTAAGTTTGGTC  300

seq1  ATGAATTTTGTAAAATGACCCTGTCTTGCAATCAGGGCTCCTTGAATTCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTTGTAAAATGACCCTGTCTTGCAATCAGGGCTCCTTGAATTCT  350

seq1  AGGGCTGTACAAGAGGCAACTCAATGGAGGGTTTGTTTTGCTTTATGGGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTACAAGAGGCAACTCAATGGAGGGTTTGTTTTGCTTTATGGGT  400

seq1  TTCTAGAGTCATGCTTTGTTTGTTGTTTTTCCAAGACAAGGTTTCTCTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTCATGCTTTGTTTGTTGTTTTTCCAAGACAAGGTTTCTCTGT  450

seq1  GTAGCCCTGGCTGTCTTGGAACACACTCTGTAGACCAGGCTGGCCTCCAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGGCTGTCTTGGAACACACTCTGTAGACCAGGCTGGCCTCCAA  500

seq1  CTCAGAAATCCACCTGCCTTAGCCTCCCAAGTGCTGGGATTAAAGGAGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCACCTGCCTTAGCCTCCCAAGTGCTGGGATTAAAGGAGTG  550

seq1  CGCCACCACACCCGGCTTCTAGTCATGTTAAGCAAAGAGGCATAAAACTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCACACCCGGCTTCTAGTCATGTTAAGCAAAGAGGCATAAAACTA  600

seq1  TATTTAAAAAAAAAAAAACATTTTAGGAATCTTAATCTCCCTCTAGTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAAAAAAAAAACATTTTAGGAATCTTAATCTCCCTCTAGTTTT  650

seq1  AACACCCAACTCCCTGCAAATCCCTTCCTGAGGTAGGTAAAGATGTATAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCAACTCCCTGCAAATCCCTTCCTGAGGTAGGTAAAGATGTATAC  700

seq1  GTCTCCAAGCCTTGAAAAAGGTCAACTTATTTGATGTCTGTCCACCCCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAGCCTTGAAAAAGGTCAACTTATTTGATGTCTGTCCACCCCCA  750

seq1  GCTCAGTTAGTCAGTTCCTGTATGATTAATGAAGGATGGATTCTATTAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTAGTCAGTTCCTGTATGATTAATGAAGGATGGATTCTATTAGA  800

seq1  GAGAGTAAGAATTC  807
      ||||||||||||||
seq2  GAGAGTAAGAATTC  814