BAC Information

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BAC

Clone NameB6Ng01-248H21
Chromosome5 (Build37)
Map Location 135,100,235 - 135,180,072
singlet/doubletdoublet
Overlap geneEif4h, LOC638081, Limk1, Eln
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2
Downstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H21.bB6Ng01-248H21.g
ACCGA056556GA056557
length2471,109
definitionB6Ng01-248H21.b B6Ng01-248H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,179,826 - 135,180,072)(135,100,235 - 135,101,351)
sequence
agcaggctgtggcagaagcattggccagcctgaactctataggaaacagt
gtcaacaacaaccccaaccagagagagagagagagagagagagagagaga
gagagagagagagagagagagaatgaatgagagcgagcaagcaatgagaa
tatagctctaggtttcatccctagcatagtataaaaccaagcaaggtggt
gtatgcctataatctcaggatggaaggaagggagggagggaggaagg
gaattcaaagcctgtctaggttgaacatcctgagaaacaagggacgaggg
aagagtggaatgttaaatactgataccagagttgaagtcatcccgggaat
cccatccacctctagattctcgagagccacccattcctgaggatacacac
acacaaagagatcaagttgagggctgtgctcattactctgttttcatgac
acaagcgtaataatttaacaagagggaaccttgattgagaacctggcctg
actaatgtgtcccctgtgagcacatctaagggaacattctcttgagggcc
caggaaacagtgtgtaagtaatgccacctgagggcaggcgagcctgggct
gtctaaggaagcggactgagcatgtcggccagggagcagcattccccggt
cagtgtcctctgcctcagatcctgccttagcctccttccctagatgatgg
actgtagctctcttcctcaagatgcctttcctcacacacagcaagagacc
cctatctaggacgaggccatgttgttgtctgtgctggacactttcatgtc
aacaagtcagagtcacgagaggagggaacctcaactacaaaaatgccccc
ataagactgggctatagggcattctcttcattagcaattaatgtggatgg
ggccatccctgggctagtggtttgtggttcaatcagaaagcaggctgagc
gcaagccatgggaagcaagtcagtaagcagcaccctccatggcctctgca
tcagctcctgcctccaggttcctgcccagacgtccttcaatggtgagcag
tgcagtgaagtttaagccaaataagccttttcctctgagctgcttgtagt
cacggtgtttcatcacaatagaaaccccaagtcacttcagaacaggacaa
aacccaagctctcaggaccaatgctcagtaaatgatgcacaggggtggca
agcagtgtgcacacagcaagttccgttcagtgttagaacaagctaatcac
ctctgtcatcagtccaccttttcctgaatcaagcactttatcttgtttct
gcctctgccatgtccacacgagtgacccggttcacccagagctgagacca
gtaaaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135179826_135180072
seq2: B6Ng01-248H21.b_54_300 (reverse)

seq1  CCTTCCTCCCTCCCTCCCTTCCTTCCATCCTGAGATTATAGGCATACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCTCCCTCCCTTCCTTCCATCCTGAGATTATAGGCATACACC  50

seq1  ACCTTGCTTGGTTTTATACTATGCTAGGGATGAAACCTAGAGCTATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTTGGTTTTATACTATGCTAGGGATGAAACCTAGAGCTATATTC  100

seq1  TCATTGCTTGCTCGCTCTCATTCATTCTCTCTCTCTCTCTCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTTGCTCGCTCTCATTCATTCTCTCTCTCTCTCTCTCTCTCTCT  150

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGGTTGGGGTTGTTGTTGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGGTTGGGGTTGTTGTTGACACT  200

seq1  GTTTCCTATAGAGTTCAGGCTGGCCAATGCTTCTGCCACAGCCTGCT  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTATAGAGTTCAGGCTGGCCAATGCTTCTGCCACAGCCTGCT  247

seq1: chr5_135100235_135101351
seq2: B6Ng01-248H21.g_63_1171

seq1  GAATTCAAAGCCTGTCTAGGTTGAACATCCTGAGAAACAAGGGACGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCTGTCTAGGTTGAACATCCTGAGAAACAAGGGACGAGGG  50

seq1  AAGAGTGGAATGTTAAATACTGATACCAGAGTTGAAGTCATCCCGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGAATGTTAAATACTGATACCAGAGTTGAAGTCATCCCGGGAAT  100

seq1  CCCATCCACCTCTAGATTCTCGAGAGCCACCCATTCCTGAGGATACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCACCTCTAGATTCTCGAGAGCCACCCATTCCTGAGGATACACAC  150

seq1  ACACAAAGAGATCAAGTTGAGGGCTGTGCTCATTACTCTGTTTTCATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGAGATCAAGTTGAGGGCTGTGCTCATTACTCTGTTTTCATGAC  200

seq1  ACAAGCGTAATAATTTAACAAGAGGGAACCTTGATTGAGAACCTGGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCGTAATAATTTAACAAGAGGGAACCTTGATTGAGAACCTGGCCTG  250

seq1  ACTAATGTGTCCCCTGTGAGCACATCTAAGGGAACATTCTCTTGAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGTGTCCCCTGTGAGCACATCTAAGGGAACATTCTCTTGAGGGCC  300

seq1  CAGGAAACAGTGTGTAAGTAATGCCACCTGAGGGCAGGCGAGCCTGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACAGTGTGTAAGTAATGCCACCTGAGGGCAGGCGAGCCTGGGCT  350

seq1  GTCTAAGGAAGCGGACTGAGCATGTCGGCCAGGGAGCAGCATTCCCCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGGAAGCGGACTGAGCATGTCGGCCAGGGAGCAGCATTCCCCGGT  400

seq1  CAGTGTCCTCTGCCTCAGATCCTGCCTTAGCCTCCTTCCCTAGATGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTCTGCCTCAGATCCTGCCTTAGCCTCCTTCCCTAGATGATGG  450

seq1  ACTGTAGCTCTCTTCCTCAAGATGCCTTTCCTCACACACAGCAAGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTCTCTTCCTCAAGATGCCTTTCCTCACACACAGCAAGAGACC  500

seq1  CCTATCTAGGACGAGGCCATGTTGTTGTCTGTGCTGGACACTTTCATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTAGGACGAGGCCATGTTGTTGTCTGTGCTGGACACTTTCATGTC  550

seq1  AACAAGTCAGAGTCACGAGAGGAGGGAACCTCAACTACAAAAATGCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCAGAGTCACGAGAGGAGGGAACCTCAACTACAAAAATGCCCCC  600

seq1  ATAAGACTGGGCTATAGGGCATTCTCTTCATTAGCAATTAATGTGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTGGGCTATAGGGCATTCTCTTCATTAGCAATTAATGTGGATGG  650

seq1  GGCCATCCCTGGGCTAGTGGTTTGTGGTTCAATCAGAAAGCAGGCTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCCTGGGCTAGTGGTTTGTGGTTCAATCAGAAAGCAGGCTGAGC  700

seq1  GCAAGCCATGGGAAGCAAGTCAGTAAGCAGCACCCTCCATGGCCTCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCATGGGAAGCAAGTCAGTAAGCAGCACCCTCCATGGCCTCTGCA  750

seq1  TCAGCTCCTGCCTCCAGGTTCCTGCCCAGACGTCCTTCAATGGTGAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTGCCTCCAGGTTCCTGCCCAGACGTCCTTCAATGGTGAGCAG  800

seq1  TGCAGTGAAGTTTAAGCCAAATAAGCCTTTTCCTCTGAGCTGCTTGTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAAGTTTAAGCCAAATAAGCCTTTTCCTCTGAGCTGCTTGTAGT  850

seq1  CACGGTGTTTCATCACAATAGAAACCCCAAGTCACTTCAGAAACAGGACA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACGGTGTTTCATCACAATAGAAACCCCAAGTCACTTCAG-AACAGGACA  899

seq1  AAACCCAAGCTCTCAGGGACCAATGCTCAGTAAATGATGCACAGGGGTGG  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAACCCAAGCTCTCA-GGACCAATGCTCAGTAAATGATGCACAGGGGTGG  948

seq1  CAAGCAGTGTGCACACAGCAAGTTCCGTTCAGTGTTAAGAC-AGCTAATC  999
      |||||||||||||||||||||||||||||||||||||  || ||||||||
seq2  CAAGCAGTGTGCACACAGCAAGTTCCGTTCAGTGTTAGAACAAGCTAATC  998

seq1  ACCTCTGTCATCAGGTCCACC-TTTCCTGAATCCAAAGCCACCTTTATCT  1048
      ||||||||||||| ||||||| |||||||||||  ||||   ||||||||
seq2  ACCTCTGTCATCA-GTCCACCTTTTCCTGAATC--AAGC--ACTTTATCT  1043

seq1  TGTTTTCTGCCTTCTGCAATGTCCACACGAAGTGACC--GGTCACCCAAG  1096
      || |||||||| ||||| ||||||||||| |||||||  | |||||| ||
seq2  TG-TTTCTGCC-TCTGCCATGTCCACACG-AGTGACCCGGTTCACCC-AG  1089

seq1  AGCTGAGGACAAGGAAAAGAC  1117
      |||||| ||| || |||||||
seq2  AGCTGA-GACCAGTAAAAGAC  1109