BAC Information

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BAC

Clone NameB6Ng01-248N05
Chromosome5 (Build37)
Map Location 15,780,989 - 15,897,372
singlet/doubletdoublet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248N05.bB6Ng01-248N05.g
ACCGA056803GA056804
length1,132528
definitionB6Ng01-248N05.b B6Ng01-248N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,780,989 - 15,782,117)(15,896,840 - 15,897,372)
sequence
gaattccagtaattttctcacgtaagaagacagaaatgaagcattgccat
atatatttataaatttaaccttattaaaaaagttatgaagctgaatcttc
aagaaaaagtataacttttctgactttaaagatccatgaaaatatattac
aaaaataaaatagaaataattctgttaaaaagcaaagaattttttatgta
ggtacatatgttcttatgtgcaaaggtgtgtagagtttggggaccatcta
ttgtctttccttggatgttgtctatcttttggggttttcctttttaagaa
catagtcttttactggtctagaacttgccaggtaggctaggctagtttgt
tattaatcacgagggatatgtctgtgagtctccatagtaatgaaattaca
actacatcatcacactttaaaaaataacatttatattaattctctgggta
tctcatatagagcattttcatattcctgctgcatctcctccatgacctac
accaatggcctcacccaaccaactgcacatctcctttctccctttattta
aaacccattaattcaaccagcctttgggcaagcaaggcaatcaatttaag
aactggaccatctccttattctcaagaaattctttgtaaaagcataaatg
tatttctctatcaaaaagatgctttctgtgtatttatagaggaattacat
aaagaaatttgctatattgggccttgaaaatatattttaattggattatt
attctttttgcagacaaatacacatctaagttgtgtgtttctacctgggg
caatgtatggttttagtcattacttccttcctgtcctctatgttcttgga
tcctgttctactttacatttctacttatggttccatggctattgtcagcc
acacaagtccacaatttacagaattatttttattagctactgggttttta
tgttacaaactctctgaaacagatgcaattgggggttcattcttctacaa
cattttgcttaagttattatgttattttttagccgttagtcttctaccca
aattggagattacaattatagtaaggagatcttaggaagaaagcttcata
ttgtggccaatttggcatgatggtatgtttcc
tcactcaagccacagaagctggatgaaatttttttgggggggtttttttg
ttttttttgttttttgttttttttttttgttttttgtttttttttttttt
ttttttttttttttggttttttgaggcagggtttctttgtgtagccctgg
ctgtcctggaactcactttgtagaccaggctgacctcgaactcagaaatc
cacctgcctctgcctcccaagtgctgggattaaaggcatgcgccaccacg
cccggcttttgatgaaatttttaatgaggctaaacattgagaatgtggca
ggtaaaaactgtcacatttcatgctactacttttgtcttgctagatgcat
aaagacattattaaatgaggaaaaattatgacttcattgataaaagcaaa
gtagttctttctttaaaatcattgtttcccaattaagctaaataggtcac
aaattgttaattatttctcatgcattaagaaaaaacatcctaacctaaaa
aaatgaagtgtgactttaaagtgttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15780989_15782117
seq2: B6Ng01-248N05.b_49_1179

seq1  GAATTCCAGTAATTTTCTCACGTAAGAAGACAGAAATGAAGCATTGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAATTTTCTCACGTAAGAAGACAGAAATGAAGCATTGCCAT  50

seq1  ATATATTTATAAATTTAACCTTATTAAAAAAGTTATGAAGCTGAATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTATAAATTTAACCTTATTAAAAAAGTTATGAAGCTGAATCTTC  100

seq1  AAGAAAAAGTATAACTTTTCTGACTTTAAAGATCCATGAAAATATATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGTATAACTTTTCTGACTTTAAAGATCCATGAAAATATATTAC  150

seq1  AAAAATAAAATAGAAATAATTCTGTTAAAAAGCAAAGAATTTTTTATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATAGAAATAATTCTGTTAAAAAGCAAAGAATTTTTTATGTA  200

seq1  GGTACATATGTTCTTATGTGCAAAGGTGTGTAGAGTTTGGGGACCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATATGTTCTTATGTGCAAAGGTGTGTAGAGTTTGGGGACCATCTA  250

seq1  TTGTCTTTCCTTGGATGTTGTCTATCTTTTGGGGTTTTCCTTTTTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTCCTTGGATGTTGTCTATCTTTTGGGGTTTTCCTTTTTAAGAA  300

seq1  CATAGTCTTTTACTGGTCTAGAACTTGCCAGGTAGGCTAGGCTAGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTTTTACTGGTCTAGAACTTGCCAGGTAGGCTAGGCTAGTTTGT  350

seq1  TATTAATCACGAGGGATATGTCTGTGAGTCTCCATAGTAATGAAATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCACGAGGGATATGTCTGTGAGTCTCCATAGTAATGAAATTACA  400

seq1  ACTACATCATCACACTTTAAAAAATAACATTTATATTAATTCTCTGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCATCACACTTTAAAAAATAACATTTATATTAATTCTCTGGGTA  450

seq1  TCTCATATAGAGCATTTTCATATTCCTGCTGCATCTCCTCCATGACCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATAGAGCATTTTCATATTCCTGCTGCATCTCCTCCATGACCTAC  500

seq1  ACCAATGGCCTCACCCAACCAACTGCACATCTCCTTTCTCCCTTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGGCCTCACCCAACCAACTGCACATCTCCTTTCTCCCTTTATTTA  550

seq1  AAACCCATTAATTCAACCAGCCTTTGGGCAAGCAAGGCAATCAATTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATTAATTCAACCAGCCTTTGGGCAAGCAAGGCAATCAATTTAAG  600

seq1  AACTGGACCATCTCCTTATTCTCAAGAAATTCTTTGTAAAAGCATAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACCATCTCCTTATTCTCAAGAAATTCTTTGTAAAAGCATAAATG  650

seq1  TATTTCTCTATCAAAAAGATGCTTTCTGTGTATTTATAGAGGAATTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTATCAAAAAGATGCTTTCTGTGTATTTATAGAGGAATTACAT  700

seq1  AAAGAAATTTGCTATATTGGGCCTTGAAAATATATTTTAATTGGATTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTTGCTATATTGGGCCTTGAAAATATATTTTAATTGGATTATT  750

seq1  ATTCTTTTTGCAGACAAATACACATCTAAGTTGTGTGTTTCTACCTGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTGCAGACAAATACACATCTAAGTTGTGTGTTTCTACCTGGGG  800

seq1  CAATGTATGGTTTTAGTCATTACTTCCTTCCTGTCCTCTATGTTCTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATGGTTTTAGTCATTACTTCCTTCCTGTCCTCTATGTTCTTGGA  850

seq1  TCCTGTTCTACTTTACATTTCTACTTATGGTTCCATGGCTATTGTCAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTACTTTACATTTCTACTTATGGTTCCATGGCTATTGTCAGCC  900

seq1  ACACAAGTCCACAATTAACAGAAATTATTTTATTAGCTACTGGG-TTTTA  949
      |||||||||||||||| |||||| |  ||||||||||||||||| |||||
seq2  ACACAAGTCCACAATTTACAGAATTATTTTTATTAGCTACTGGGTTTTTA  950

seq1  TG-TACAAACTCTCTGAAACAGATGCAATT-GGGGTTCATTCTTCTACAA  997
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTTACAAACTCTCTGAAACAGATGCAATTGGGGGTTCATTCTTCTACAA  1000

seq1  CATTTTGCTAAAGTTA-TATGTTA-TTTTTAGGCGTTAGTC-TCTAACCA  1044
      ||||||||| |||||| ||||||| ||||||| |||||||| |||| |||
seq2  CATTTTGCTTAAGTTATTATGTTATTTTTTAGCCGTTAGTCTTCTACCCA  1050

seq1  AA-TGGAGATTTAACAATTTAATAGTAGGGAGATTCTTAGGGAAGAAAGC  1093
      || ||||||||  ||||||  |||||| ||||| ||||| ||||||||||
seq2  AATTGGAGATT--ACAATT--ATAGTAAGGAGA-TCTTA-GGAAGAAAGC  1094

seq1  TTCATATTGTG--CCATGTGGCATGTATGGTATGTTTC  1129
      |||||||||||  | || ||||||| ||||||||||||
seq2  TTCATATTGTGGCCAATTTGGCATG-ATGGTATGTTTC  1131

seq1: chr5_15896840_15897372
seq2: B6Ng01-248N05.g_65_598 (reverse)

seq1  GACAACACTTT-AAGTCACACTTCATTTTTTTATGTTAGGATGTTTTTTC  49
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  GACAACACTTTAAAGTCACACTTCATTTTTTTAGGTTAGGATGTTTTTTC  50

seq1  TTGATGCATGAGAAATAATTAACAATTTGTGACCTATTTAGCTTAATTGG  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCATGAGAAATAATTAACAATTTGTGACCTATTTAGCTTAATTGG  100

seq1  GAAACAATGATTTTAAAGAAAGAACTACTTTGCTTTTATCAATGAAGTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGATTTTAAAGAAAGAACTACTTTGCTTTTATCAATGAAGTCA  150

seq1  TAATTTTTCCTCATTTAATAATGTCTTTATGCATCTAGCAAGACAAAAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCCTCATTTAATAATGTCTTTATGCATCTAGCAAGACAAAAGT  200

seq1  AGTAGCATGAAATGTGACAGTTTTTACCTGCCACATTCTCAATGTTTAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATGAAATGTGACAGTTTTTACCTGCCACATTCTCAATGTTTAGC  250

seq1  CTCATTAAAAATTTCATCAAAAGCCGGGCGTGGTGGCGCATGCCTTTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAAAATTTCATCAAAAGCCGGGCGTGGTGGCGCATGCCTTTAAT  300

seq1  CCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGTCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGTCAGC  350

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAAAGAAACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAAAGAAACCC  400

seq1  TGCCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAC  450

seq1  AAAAAAAAAAAACAAAAAACAAAAAAAACAAAAAAACCCCCCCAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACAAAAAACAAAAAAAACAAAAAAACCCCCCCAAAAAAA  500

seq1  TTTCATCCAGCTTCTGTGGCTTGAGTGAGAATTC  533
      ||||||||||||||||||||||||||||||||||
seq2  TTTCATCCAGCTTCTGTGGCTTGAGTGAGAATTC  534