BAC Information

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BAC

Clone NameB6Ng01-248N14
Chromosome5 (Build37)14 (Build37)
Map Location 5,080,976 - 5,081,71020,092,302 - 20,093,034
singlet/doubletsingletsinglet
Overlap genePftk1
Upstream geneCyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248N14.bB6Ng01-248N14.g
ACCGA056821GA056822
length1,144995
definitionB6Ng01-248N14.b B6Ng01-248N14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,080,976 - 5,081,710)(20,092,302 - 20,093,034)
sequence
gaattctctgtgaggcattaagctctcagactaaggattattgtgtctgt
gttcacgggtgttgactatattactatgactcttgttactgtgtccatgt
gacctcagtatctgcgtaatacattctctaaggatgaatcttgattgctc
ctgctcttctttctagtttaatagtttcagaagtactggtgtgggctctt
ctttaaagatttgatgaaaatcaccaatgagtttgtctggtctggccttt
tcttgtttttattgttaagaaattcttttaaattactatttaaatcttgt
tgcatttttgtttgaaattagatttttgagattttatttgtttgtttgtt
ttcgagacagggtttctctgtatcaccctagctgtcctggaactcacttt
gtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcctg
agtgctgggattaaaggcgtgcactaccatgccccgtaatttttgagaat
tttacatgatattttggttgtatttttcctttcccctaactcctcccaga
tcctccattcggcatttcctactatcctggtgtgggtcttttgttttgtg
tctggccatcaagtacagtttctcttgcctttatactctccggtatgtgg
ccttccattgaagagtagtctgtccagccttatccgtgaggggccacatc
cttaaaatcgatagctctcctgacagttatcagttttgaagggctcatca
gctaggtgtgtgatttcttgtccacctcccctcttcatgctgagattttg
actgacttgagcctgagcaggtcacaatgctgtgagttcatatgtgcaac
tccctcctttacccagaaaacactgtaactttgtgccatcactgcctctg
actcatacagtcttcagtttgggatgttttccctctttttagttaagttg
gttagttaatgtgtatctagaggatcatcatttttttctagattttttcc
attccaccagaacatttttaagagatcccctagtgatgttttggaatatc
tggatcaattgtattaatgatactgcattatcttctctctaattgtagtg
tatcttcgattcctatgagttatctggagattaccttgtattgt

gaattcatagttcctagaagtaaacccactactattactctgataaaggt
acacagaattaaaatgccttctaaatacttatccttaagtgcaaagacta
gtacaactctcatcctccgtaagagtagcttcatttgatacaaagactca
ctattggtcaatgtgcagaaaataatctactgtggagtgtttgtccctaa
atgggacatctgtttcatactcctgcctctcaagactcagggaacaccat
gggagaagaggtagtgtgactgtaagagccagatgtcaagatggactact
atgaaatattctctggatacaggagagcaattagacccctgaactcacac
aacttgtgcttgcctacaaatatttgcaaatcaagctggtcaacattcca
gcatggatgggggagggccccatgaagacccacccctaactaccagctat
tggagttgatggttgctggggagggaaaaatccattttgtcttctgtttt
tgtttttttttgttttttgtttgtttgtttgttttcagaagtacagcacc
tcataagttccctatgatcctccagcagatgaccctgtatgcatatgggc
agcatgaattgtgtcataaagaagaggagaatgagaagtagtacatgaag
gagcaggatattccaggagaagtcagaagaaaagactagggatggataca
atcaaaatacatagcgtaaatgtataaaactctaagagaataaaaattaa
tttttttaaaggtgaagagagaaagacacctgatgtttatctctgggcct
gcagatgctcaagcctgtggtatgtgagcacatgggcttgcacacacaca
cacacacacacacacacacacaatcaatttctgtttgggagttggtctag
tgctgctatgtaatccaaatggctagatactgtccttccaatgattgctt
atcaatttctgagcacattggaacaatatgaatgttgtataaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5080976_5081710
seq2: B6Ng01-248N14.b_466_1187

seq1  TCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGC  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGC  50

seq1  GCCACCACACCTGGCGATTTTTGAAAATTTTACATGATATTTTGGTTGTA  100
       | ||||  ||  |  |||||||| |||||||||||||||||||||||||
seq2  ACTACCATGCCCCGTAATTTTTGAGAATTTTACATGATATTTTGGTTGTA  100

seq1  TTTATCCTTTCCCCTAACTCCTCCCAGATCCTCCGCTCGTCAGTTCCTAC  150
      ||| ||||||||||||||||||||||||||||||  ||| || |||||||
seq2  TTTTTCCTTTCCCCTAACTCCTCCCAGATCCTCCATTCGGCATTTCCTAC  150

seq1  TCTCCTGGTTTGGGTCTTTTGTTTTGTGTCTGGCCATCCAGTACACTTTC  200
      | ||||||| |||||||||||||||||||||||||||| |||||| ||||
seq2  TATCCTGGTGTGGGTCTTTTGTTTTGTGTCTGGCCATCAAGTACAGTTTC  200

seq1  TCTTGTCTTTATACTCTCAGGTGTGTGGCCTTCCATTGAAGAGTAGTCTG  250
      ||||| |||||||||||| ||| |||||||||||||||||||||||||||
seq2  TCTTGCCTTTATACTCTCCGGTATGTGGCCTTCCATTGAAGAGTAGTCTG  250

seq1  TCCAACCTTATCAGTAAGGGGCCACATCCTTAAAATTGATAGCTCTCCTG  300
      |||| ||||||| || |||||||||||||||||||| |||||||||||||
seq2  TCCAGCCTTATCCGTGAGGGGCCACATCCTTAAAATCGATAGCTCTCCTG  300

seq1  ACAGCTATCAGTTTTGAAGGGCTCATCAGCTGGGTGTGTGATTTCCTGTC  350
      |||| |||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ACAGTTATCAGTTTTGAAGGGCTCATCAGCTAGGTGTGTGATTTCTTGTC  350

seq1  CACCTCCCCTCTTCATGCTGAGATTTTGACTGACTTGAGCCTGAGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCCTCTTCATGCTGAGATTTTGACTGACTTGAGCCTGAGCAGGT  400

seq1  CACAATGCTGTGAGTTCATATGTGCAACTCCCTCCTTTACCCAGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCTGTGAGTTCATATGTGCAACTCCCTCCTTTACCCAGAAAACA  450

seq1  CTGCAACTTTTTGCCATCAACTGCCTCTGACTCATACAGTCTTCAGTTT-  499
      ||| |||||| ||||||| |||||||||||||||||||||||||||||| 
seq2  CTGTAACTTTGTGCCATC-ACTGCCTCTGACTCATACAGTCTTCAGTTTG  499

seq1  GGATGTTTTCCCTCTTTTTAGTTTTAGTTGGTAGTTTAATGTATATCTAG  549
      ||||||||||||||||||||| || |||||||   ||||||| |||||||
seq2  GGATGTTTTCCCTCTTTTTAG-TTAAGTTGGTTAGTTAATGTGTATCTAG  548

seq1  AGGATCATCAATTATTTCTAGA-TTTTTCCATTTCACCGGAACATTTTTA  598
      |||||||||| || |||||||| |||||||||| |||| |||||||||||
seq2  AGGATCATCATTTTTTTCTAGATTTTTTCCATTCCACCAGAACATTTTTA  598

seq1  AGAGATTCCCTAGTGACTGTTTGG-ATATCTGGATTCCATTTGTATTTAT  647
      |||||| |||||||||   ||||| ||||||||||  || ||||||| ||
seq2  AGAGATCCCCTAGTGATGTTTTGGAATATCTGGAT--CAATTGTATTAAT  646

seq1  TGTATACTGCATTATCTTCTCTCTAATATTGTTAATGTATATCTTCCTAT  697
         ||||||||||||||||||||||  |||||    || |||||| | ||
seq2  --GATACTGCATTATCTTCTCTCTA--ATTGT---AGTGTATCTT-CGAT  688

seq1  TTCTATGAGTTATCTTGGTGAAGATTACTTGTTATTGT  735
      | ||||||||||||    || ||||||| |  ||||||
seq2  TCCTATGAGTTATC----TGGAGATTACCTTGTATTGT  722


seq1: chr14_20092302_20093034
seq2: B6Ng01-248N14.g_323_1062

seq1  AAGAGGTAGTGTGACTGTAAGAGCCAGATGTCAAGATGGACTACTATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAGTGTGACTGTAAGAGCCAGATGTCAAGATGGACTACTATGAA  50

seq1  ATATTCTCTGGATACAGGAGAGCAATTAGACCCCTGAACTCACACAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCTGGATACAGGAGAGCAATTAGACCCCTGAACTCACACAACTT  100

seq1  GTGCTTGCCTACAAATATTTGCAAATCAAGCTGGTCAACATTCCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCCTACAAATATTTGCAAATCAAGCTGGTCAACATTCCAGCATG  150

seq1  GATGGGGGAGGGCCCCATGAAGACCCACCCCTAACTACCAGCTATTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGAGGGCCCCATGAAGACCCACCCCTAACTACCAGCTATTGGAG  200

seq1  TTGATGGTTGCTGGGGAGGGAAAAATCCATTTTGTCTTCTGTTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTTGCTGGGGAGGGAAAAATCCATTTTGTCTTCTGTTTTTGTTT  250

seq1  TTTTTTGTTTTTTGTTTGTTTGTTTGTTTTCAGAAGTACAGCACCTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTGTTTGTTTGTTTGTTTTCAGAAGTACAGCACCTCATA  300

seq1  AGTTCCCTATGATCCTCCAGCAGATGACCCTGTATGCATATGGGCAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTATGATCCTCCAGCAGATGACCCTGTATGCATATGGGCAGCAT  350

seq1  GAATTGTGTCATAAAGAAGAGGAGAATGAGAAGTAGTACATGAAGGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGTCATAAAGAAGAGGAGAATGAGAAGTAGTACATGAAGGAGCA  400

seq1  GGATATTCCAGGAGAAGTCAGAAGAAAAGACTAGGGATGGATACAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTCCAGGAGAAGTCAGAAGAAAAGACTAGGGATGGATACAATCAA  450

seq1  AATACATAGCGTAAATGTATAAAACTCTAAGAGAATAAAAATTAA-TTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATACATAGCGTAAATGTATAAAACTCTAAGAGAATAAAAATTAATTTTT  500

seq1  TTAAAGGTGAAGAGAGAAAGACACCTGATGTTTATCTCT-GGCCTGCAGA  548
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTAAAGGTGAAGAGAGAAAGACACCTGATGTTTATCTCTGGGCCTGCAGA  550

seq1  TGCTCAAGCCTGTGGTATGTGAGCACATGGGCTTGCACACACACACACAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGCCTGTGGTATGTGAGCACATGGGCTTGCACACACACACACAC  600

seq1  ACACACACACACACACAATCAATTTCTG-TTGGGAGTTGGTCTAGTGCTG  647
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACACACACACACACAATCAATTTCTGTTTGGGAGTTGGTCTAGTGCTG  650

seq1  CTATGT-ATTCAAAT-GCTAGATACTGTCC-TCCAAGATTTGCTTTACAA  694
      |||||| || ||||| |||||||||||||| |||||   ||||||  |||
seq2  CTATGTAATCCAAATGGCTAGATACTGTCCTTCCAATGATTGCTTATCAA  700

seq1  TTTCATGAGCACA-TGGAACAAAATG-ATGTTGTATAATTT  733
      |||| |||||||| |||||||| ||| ||||||||||| ||
seq2  TTTC-TGAGCACATTGGAACAATATGAATGTTGTATAAATT  740


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