BAC Information

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BAC

Clone NameB6Ng01-249C18
Chromosome5 (Build37)
Map Location 102,425,814 - 102,555,497
singlet/doubletdoublet
Overlap geneWdfy3, EG666515, EG666527
Upstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
Downstream geneLOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249C18.bB6Ng01-249C18.g
ACCGA057060GA057061
length1,203489
definitionB6Ng01-249C18.b B6Ng01-249C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,425,814 - 102,427,009)(102,555,004 - 102,555,497)
sequence
gaattcattgatgtttattggtagtaaaaaatatgtaaaataaatatatt
tactgtgcgggtacacccacaaaacagttttattgaactttaattaaaat
gccattcttgagatcataaagtaaaaggctttatttttttttattattat
ttatttttgtttttcgagacagggtttctctctatagccctggctgtcct
ggaactcacgttgtagaccaggctggcctcgaactcagaaatctgcctgc
ctctgcctcccaagtgctgggattaaaggcgtgtgccatcactgcctggc
aagtaaaagactcgtaagaccagtttatcagctgctctctgtgtgatgcg
tagatacagcaggctctgtaattacgaaaggaatcacgggagaacacgcc
tgcctcatgcaatctgcatggctacccgagaaaaggagcttcagcaatgg
gaagtgactttgcccgctccttactaagtatggaactaagcgctgaattc
aaccttccacagcgatgctctgtgaggacgcccgatgacgcacctgcctg
caggtctgctgttgtgtggcttcacacccacttagacaaaatcagacagt
gttcattgctggtggaagtacactctgcacacaccgcgcctttccatcaa
catgtgctggtaactgacagcaaatagcccagtctgatccccgaggccat
ttctcaacctaccaagaggtcagtaaaagtgtcttgggacttcggagggg
gatttccagtgaacatgtgactacgcctgctttaaaatatacttcatgtc
aatcagtgacctgtgggctattctcatttacatcccagccttaaatgttg
gcacagtctcctacacactgaggatgctcttttttgtggatgcaagcgag
caacaggtgtctccctgtcctgggccattcaagttttgagacagggtttc
ttaaatgaacctgaagctccttcagctatgctggaatctgctccccagcc
cctggattctggggtgtatgctgtagtaccagcctgtacctgggtcctgg
gagctgaacttgggttctctgcctgagcagccaaacacctcactgatgaa
atcaatcttccttcgcactggaacacgttaatcctaacaagaagtgtgta
ccagccagggcttggaatatgccaaggcaatcctgccggaacagtaagac
ttt
aatagatacacgctgttaaatgatgaagaaagagaaggaaggtagacgaa
agagacaaaagccaaaaagagagccaagagagagcgaggaagggaggggg
agaggggaagatgttaagacagaactagaacacaatagcgtgtcgttttt
ttttttttcagaagcttttacaagaaaatggagcagattctgcccaccat
cgccacttcctgtccctctagaactttcaaatcatggactcctacagtct
tctgttggcagagatttttccaggaaatggaattcagtcttccactaagc
ttagtagctctttgccatgtcattaacaaaggaagtgaaaggcactcttg
agagcgcctgcttcttttgtggtaatttctgcttctgtgttagaaggcga
taaaagaaacacacagcacttgtaataatgtctactgaggaatgaatccg
tcagtgtggctctacctcctctgatctgtaccaaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102425814_102427009
seq2: B6Ng01-249C18.b_51_1253

seq1  GAATTCATTGATGTTTATTGGTAGTAAAAAATATGTAAAATAAATATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATGTTTATTGGTAGTAAAAAATATGTAAAATAAATATATT  50

seq1  TACTGTGCGGGTACACCCACAAAACAGTTTTATTGAACTTTAATTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCGGGTACACCCACAAAACAGTTTTATTGAACTTTAATTAAAAT  100

seq1  GCCATTCTTGAGATCATAAAGTAAAAGGCTTTATTTTTTTTTATTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTTGAGATCATAAAGTAAAAGGCTTTATTTTTTTTTATTATTAT  150

seq1  TTATTTTTGTTTTTCGAGACAGGGTTTCTCTCTATAGCCCTGGCTGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGTTTTTCGAGACAGGGTTTCTCTCTATAGCCCTGGCTGTCCT  200

seq1  GGAACTCACGTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACGTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC  250

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCATCACTGCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCATCACTGCCTGGC  300

seq1  AAGTAAAAGACTCGTAAGACCAGTTTATCAGCTGCTCTCTGTGTGATGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAGACTCGTAAGACCAGTTTATCAGCTGCTCTCTGTGTGATGCG  350

seq1  TAGATACAGCAGGCTCTGTAATTACGAAAGGAATCACGGGAGAACACGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAGCAGGCTCTGTAATTACGAAAGGAATCACGGGAGAACACGCC  400

seq1  TGCCTCATGCAATCTGCATGGCTACCCGAGAAAAGGAGCTTCAGCAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATGCAATCTGCATGGCTACCCGAGAAAAGGAGCTTCAGCAATGG  450

seq1  GAAGTGACTTTGCCCGCTCCTTACTAAGTATGGAACTAAGCGCTGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACTTTGCCCGCTCCTTACTAAGTATGGAACTAAGCGCTGAATTC  500

seq1  AACCTTCCACAGCGATGCTCTGTGAGGACGCCCGATGACGCACCTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCACAGCGATGCTCTGTGAGGACGCCCGATGACGCACCTGCCTG  550

seq1  CAGGTCTGCTGTTGTGTGGCTTCACACCCACTTAGACAAAATCAGACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCTGTTGTGTGGCTTCACACCCACTTAGACAAAATCAGACAGT  600

seq1  GTTCATTGCTGGTGGAAGTACACTCTGCACACACCGCGCCTTTCCATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGCTGGTGGAAGTACACTCTGCACACACCGCGCCTTTCCATCAA  650

seq1  CATGTGCTGGTAACTGACAGCAAATAGCCCAGTCTGATCCCCGAGGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTGGTAACTGACAGCAAATAGCCCAGTCTGATCCCCGAGGCCAT  700

seq1  TTCTCAACCTACCAAGAGGTCAGTAAAAGTGTCTTGGGACTTCGGAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCTACCAAGAGGTCAGTAAAAGTGTCTTGGGACTTCGGAGGGG  750

seq1  GATTTCCAGTGAACATGTGACTACGCCTGCTTTAAAATATACTTCATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGTGAACATGTGACTACGCCTGCTTTAAAATATACTTCATGTC  800

seq1  AATCAGTGACCTGTGGGCTATTCTCATTTACATCCCAGCCTTAAATGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGACCTGTGGGCTATTCTCATTTACATCCCAGCCTTAAATGTTG  850

seq1  GCACAGTCTCCTACACACTGAGGATGC-CCTTTTTGTGGATGCAGGCGAG  899
      ||||||||||||||||||||||||||| | |||||||||||||| |||||
seq2  GCACAGTCTCCTACACACTGAGGATGCTCTTTTTTGTGGATGCAAGCGAG  900

seq1  C-ACAGGTGTCTCCCTGTCCTGGGCCATTCAAGTTTTGAGACAGGG-TTC  947
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAACAGGTGTCTCCCTGTCCTGGGCCATTCAAGTTTTGAGACAGGGTTTC  950

seq1  TTAAATGAACCTGAAGCTCCTTCAGCTATGCTGGAATCTGCTCCCCAGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAACCTGAAGCTCCTTCAGCTATGCTGGAATCTGCTCCCCAGCC  1000

seq1  CCTGGATTCTGGGGTGTATGCTGTAGTACCCAGCTTGTACCTGGGTCCTG  1047
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CCTGGATTCTGGGGTGTATGCTGTAGTA-CCAGCCTGTACCTGGGTCCTG  1049

seq1  GGAGCTGAACTTGGGTTCTCCTGCCTGAGCAG-CAAACACCTCACTGATG  1096
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  GGAGCTGAACTTGGGTTCT-CTGCCTGAGCAGCCAAACACCTCACTGATG  1098

seq1  -AATCCATC-TCCCTCGCACT-GAACACGTT-ATCTTAACAAG-AGTGTG  1141
       |||| ||| ||| ||||||| ||||||||| ||| ||||||| ||||||
seq2  AAATCAATCTTCCTTCGCACTGGAACACGTTAATCCTAACAAGAAGTGTG  1148

seq1  AAACAGGCCAGGGC-TGGAGAAGGCAAGGGATATTCCTGC--GGACAGTA  1188
       | || |||||||| ||||  | || | ||  | ||||||  | ||||| 
seq2  TACCA-GCCAGGGCTTGGAATATGCCAAGG-CAATCCTGCCGGAACAGT-  1195

seq1  AAGACTTT  1196
      ||||||||
seq2  AAGACTTT  1203

seq1: chr5_102555004_102555497
seq2: B6Ng01-249C18.g_65_559 (reverse)

seq1  TTTCC-TGGTACAGATCAGAGGAGGTAGAGCCACACTGACGGCTTCATTC  49
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCCTTGGTACAGATCAGAGGAGGTAGAGCCACACTGACGGATTCATTC  50

seq1  CTCAGTAGACATTATTACAAGTGCTGTGTGTTTCTTTTATCGCCTTCTAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGACATTATTACAAGTGCTGTGTGTTTCTTTTATCGCCTTCTAA  100

seq1  CACAGAAGCAGAAATTACCACAAAAGAAGCAGGCGCTCTCAAGAGTGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCAGAAATTACCACAAAAGAAGCAGGCGCTCTCAAGAGTGCCT  150

seq1  TTCACTTCCTTTGTTAATGACATGGCAAAGAGCTACTAAGCTTAGTGGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCCTTTGTTAATGACATGGCAAAGAGCTACTAAGCTTAGTGGAA  200

seq1  GACTGAATTCCATTTCCTGGAAAAATCTCTGCCAACAGAAGACTGTAGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATTCCATTTCCTGGAAAAATCTCTGCCAACAGAAGACTGTAGGA  250

seq1  GTCCATGATTTGAAAGTTCTAGAGGGACAGGAAGTGGCGATGGTGGGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGATTTGAAAGTTCTAGAGGGACAGGAAGTGGCGATGGTGGGCAG  300

seq1  AATCTGCTCCATTTTCTTGTAAAAGCTTCTGAAAAAAAAAAAAACGACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTCCATTTTCTTGTAAAAGCTTCTGAAAAAAAAAAAAACGACAC  350

seq1  GCTATTGTGTTCTAGTTCTGTCTTAACATCTTCCCCTCTCCCCCTCCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGTGTTCTAGTTCTGTCTTAACATCTTCCCCTCTCCCCCTCCCTT  400

seq1  CCTCGCTCTCTCTTGGCTCTCTTTTTGGCTTTTGTCTCTTTCGTCTACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCTCTCTCTTGGCTCTCTTTTTGGCTTTTGTCTCTTTCGTCTACCT  450

seq1  TCCTTCTCTTTCTTCATCATTTAACAGCGTGTATCTATTGAATTC  494
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTTCTTCATCATTTAACAGCGTGTATCTATTGAATTC  495