BAC Information

Click to search

BAC

Clone NameB6Ng01-249L04
Chromosome5 (Build37)
Map Location 78,478,303 - 78,479,227
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L04.bB6Ng01-249L04.g
ACCGA057447GA057448
length9251,104
definitionB6Ng01-249L04.b B6Ng01-249L04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcgtaattttaaacaacaatcattccattattttctgatac
ctgtcatggagttagttaggacattctagcctctgcagaaggaatttgta
agcccctttgagtattgctgaatgtagatctagtaaagggttggttccat
cttggaaagtgagcaatttgttaaccaggtacacctatctttagtgtgtt
gttttacatatatgcaatgagaggcccaggctggaatgtgtcacgtagcc
actcttctgtttcccaaacccattcttttagctaaagcaatgccaaagcc
aaagcaatagttagtgggttagcactttgtcatggactaaactgaaaagt
cacataggcaaaacagagcaagaaatattttgcaaatatttgttctgttg
gacatccagtgattttatttccaagtgtatctgttcagccagtgttcact
gggacagatttttaaaagccatcttgagtctgaacgtcagacttcttctc
tctgttttcattgttttctcttcaagcaatgtaacatggagaggaaatgc
cagattacaacagaaaatattctactgaaactgatctgcaactacaggtc
atcttaaaacaaatgcctcacccataataaagtcccccaaagtaacatgc
atggccatgtaaaggcatcgcatgattcccaggcattaaaatcaagtaag
gcttttggatcattttctctgaaaatcattacaagcaaactacaaaaaat
agatacttaaaaatctaattcaaatgcacaagcatgaatttcaatccaga
aaaatggtaaaacacacacacacaaagagagagagacctacttcctacct
tccaaagttgcctgtttccattattctgcgagcctgttctctctctctct
ctctctctctctctctctctctctc

gaattctttgtttagctctgtaccccagtgtttaatagggttatttggtt
ctctggagtctaagttcttgagttctttgtatatcttggatattagccct
ctatcagatgtagcattggtaaagaacttttcccaatctgttggttgcca
ttctgtcctattgacagtgtcctttgccttatagaagctttgcaatttta
tgaagtcccatttgtcaattcttgatcttggagcataagtgaattctgtt
caggaaagtttcccctgtgcccatgtgtttaaggctcttccccactttct
tttctattagttccagtgtatttggctttatgtggaggtccttgatccac
ttggacttgagctttgtacagggagataagaatggatcgattagcattct
tctacatgctaactgctagtttgaacagcaccatttgttgaaaatgcttt
tttccactgaatggttttagttcctttatcaaagatcaagtgaccatagg
tgtgtgtgttcatttttgggtcttcagttctattccattgatctacctgc
ctgtcactgtaccaataacatacagttttgtttttgtttttttttttttt
ttgttttgttttgttttgttttttaactattgctctgtaacacagtttga
gatcagggatggtgattcctccagaagttcttttatcgttgaaaatagtt
tttgctatcctaggtttttttgttattccaaatgattttgagaattggtc
tttctaactctatgaagaattgagttgggattttgatggggattgcattg
aatctgtagattgcttttgacaagatggccatttttcctatattaatcct
gccaatccataagcatgggaaatctttccatcttctgtcatctgagatct
tcttcaatttcttccttcagagactgaagtcttgtcatgcagatctttca
cttgcttagttagaagtcacacaagtatttatattatttatgacttatta
tgagcttgtgttttctatttccttctcagctgtttatctttggagtagag
aaggccactgattgtttgaggttattttaattcagcgtatcttgcagaaa
gttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78478303_78479227
seq2: B6Ng01-249L04.b_44_968 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGGCTCGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGGCTCGCAG  50

seq1  AATAATGGAAACAGGCAACTTTGGAAGGTAGGAAGTAGGTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGAAACAGGCAACTTTGGAAGGTAGGAAGTAGGTCTCTCTCTCT  100

seq1  TTGTGTGTGTGTGTTTTACCATTTTTCTGGATTGAAATTCATGCTTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTTTTACCATTTTTCTGGATTGAAATTCATGCTTGTGC  150

seq1  ATTTGAATTAGATTTTTAAGTATCTATTTTTTGTAGTTTGCTTGTAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATTAGATTTTTAAGTATCTATTTTTTGTAGTTTGCTTGTAATGA  200

seq1  TTTTCAGAGAAAATGATCCAAAAGCCTTACTTGATTTTAATGCCTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGAAAATGATCCAAAAGCCTTACTTGATTTTAATGCCTGGGAA  250

seq1  TCATGCGATGCCTTTACATGGCCATGCATGTTACTTTGGGGGACTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCGATGCCTTTACATGGCCATGCATGTTACTTTGGGGGACTTTATT  300

seq1  ATGGGTGAGGCATTTGTTTTAAGATGACCTGTAGTTGCAGATCAGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGAGGCATTTGTTTTAAGATGACCTGTAGTTGCAGATCAGTTTCA  350

seq1  GTAGAATATTTTCTGTTGTAATCTGGCATTTCCTCTCCATGTTACATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATATTTTCTGTTGTAATCTGGCATTTCCTCTCCATGTTACATTGC  400

seq1  TTGAAGAGAAAACAATGAAAACAGAGAGAAGAAGTCTGACGTTCAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGAAAACAATGAAAACAGAGAGAAGAAGTCTGACGTTCAGACTC  450

seq1  AAGATGGCTTTTAAAAATCTGTCCCAGTGAACACTGGCTGAACAGATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTTTTAAAAATCTGTCCCAGTGAACACTGGCTGAACAGATACA  500

seq1  CTTGGAAATAAAATCACTGGATGTCCAACAGAACAAATATTTGCAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAATAAAATCACTGGATGTCCAACAGAACAAATATTTGCAAAATA  550

seq1  TTTCTTGCTCTGTTTTGCCTATGTGACTTTTCAGTTTAGTCCATGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCTCTGTTTTGCCTATGTGACTTTTCAGTTTAGTCCATGACAAA  600

seq1  GTGCTAACCCACTAACTATTGCTTTGGCTTTGGCATTGCTTTAGCTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAACCCACTAACTATTGCTTTGGCTTTGGCATTGCTTTAGCTAAAA  650

seq1  GAATGGGTTTGGGAAACAGAAGAGTGGCTACGTGACACATTCCAGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGTTTGGGAAACAGAAGAGTGGCTACGTGACACATTCCAGCCTGG  700

seq1  GCCTCTCATTGCATATATGTAAAACAACACACTAAAGATAGGTGTACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCATTGCATATATGTAAAACAACACACTAAAGATAGGTGTACCTG  750

seq1  GTTAACAAATTGCTCACTTTCCAAGATGGAACCAACCCTTTACTAGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAAATTGCTCACTTTCCAAGATGGAACCAACCCTTTACTAGATCT  800

seq1  ACATTCAGCAATACTCAAAGGGGCTTACAAATTCCTTCTGCAGAGGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGCAATACTCAAAGGGGCTTACAAATTCCTTCTGCAGAGGCTAG  850

seq1  AATGTCCTAACTAACTCCATGACAGGTATCAGAAAATAATGGAATGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTAACTAACTCCATGACAGGTATCAGAAAATAATGGAATGATTG  900

seq1  TTGTTTAAAATTACGAAATGAATTC  925
      |||||||||||||||||||||||||
seq2  TTGTTTAAAATTACGAAATGAATTC  925


| Home | SequenceCutter | Blast | Download |