BAC Information

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BAC

Clone NameB6Ng01-249M07
Chromosome5 (Build37)
Map Location 15,010,137 - 15,141,213
singlet/doubletdoublet
Overlap geneSpeer4c, Speer4d
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M07.bB6Ng01-249M07.g
ACCGA057501GA057502
length1,1801,006
definitionB6Ng01-249M07.b B6Ng01-249M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,140,021 - 15,141,213)(15,010,137 - 15,010,894)
sequence
gaattctgcactaaacccatctgttcctgggatttgtttggttgagagac
tattaatgactgcttctaattctttaagggttatgggacagccttagctc
aggggcatagatagagacccaaccttaccagttctcctgtctggtggcac
agtccactttgccccacaatgaaatgtggatgttgtagattaaagaatat
attgaaatttgagcagtaaaatgaaaatcattcattgagagaaaaaaaat
tgtcttcaagtggtcattcttaatccatcctttttacaaaaccttaataa
atattcttacaaaataagcatgaaattaattgtaaaagaagaaagaaatg
tttctggcctcttgccataattgcttttcaaattttttcttattaatttt
aattagacattcagagaaagtagacttgagaaacagtttctagttgatat
gtaaatggtacttaacagatcacagagatgactgaaggagcaaggaccta
gaagatattcaaagaatggctcattattgaccaagtggttcttaacactc
tcataagtaacttctctcacctctaatcatgtaactatggttctatacta
tatgtaatccatatatgtttctttttaacaatatcctttaagactaccca
gcactatatattttcaatgtaataattgagcaatatgctcaagtgtcctg
ttgctttatgtgtaaaaatttgcaataatctttgagaataagaaaaattt
tatttttgtccagatataatatgtcttagttagggttttactgctgtaaa
cagacactatgaccatggcaactcttaaaaggagaccatttaattgggcc
tgtcctacaggttcagagtttcagtccattatcatcaaggcaggagcatg
gcagtgccagggcaggcatggttcagaggagctgagagttctagatcttc
atctgaaggcagttggagagactggcttccaggaagctaggaggaaggtc
tcaaagcatgacagacttcttcctcaacaaggccagacctactcatacct
cctaacagtggccatcctgggccaagcatatcagccacccacactactac
tgtctataatcccagaaccctgagccagaatattaccaattgagacagct
gagaaacatagtgagattggtctcagatca
gaattctgtatgttgaattatctctgcatttcttggatgaagcctgcttg
attgtggtaaatgatcattttgatgtgttcttggatttggtttgcaagaa
ttttattgagttttttttttgcattgatattcataagcaaaaatgttctg
aagttctctttctttgttgagtctttgtgtgtttaggtataagtgcaact
gtggcttcatagaacaaattgggtagcgttccttctgtttctattttgtg
ggatagtttgaagagtattgggattaggtcttctttgaaggtctgataga
attctgcactaaacccatctagtcctgggctttgtttggttgggagactt
ttaatgactgcttctatttctttggcagttatgggagtgatagactgttt
atctgatcctggtttcattttggtacctagtgtctgtctagaaaattgtc
catttcatccaattttttcagtattgttgagtatagtcttttgtaatagg
aaattatgatttttgaatattctgtttattctgttgttatttctcccttt
tcaattctgattttgttaatttggatactgtctctttgccctctggttag
tctggctaagggtttatctattttgttgctttctcaaagaaccagctccc
ggttttattgatttttttgtatagttcttttgtttctacttggttgattt
cagctctgtatttgattatttcctgacatctactcctcttgggtgtatgt
tgggaacaaaataaaagaaagggggggtcttggactggggcctggggaga
agtaggctagaaataaatgcccacacgccgccagagttttccctattctc
tgggtctttcaggcatgggagggctgctatctaccctatccactcatccc
tgggtgggcattcctctatcccactcttcagggggtgtcaagggcagccc
tgctgggaacgcccccccccagctactttgcttaaaccccagggttgtgg
gagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15140021_15141213
seq2: B6Ng01-249M07.b_45_1224 (reverse)

seq1  TGATCTTTGAGACAAATCTCACTATGTTTCTCAGGCTGGTCTCAAATTTG  50
      |||||  |||||| ||||||||||||||||||| ||| ||||| |||| |
seq2  TGATC--TGAGACCAATCTCACTATGTTTCTCA-GCT-GTCTC-AATTGG  45

seq1  TAATATTCCTGGCTCAGGGTTCTGGGATTATAGACAAGTAGTAGTGT-GG  99
      ||||||| ||||||||||||||||||||||||||| ||||||||||| ||
seq2  TAATATT-CTGGCTCAGGGTTCTGGGATTATAGAC-AGTAGTAGTGTGGG  93

seq1  TGGCTTGAATATGCTTGGCCCAGGATGG-CACTGTTAGGAGGTATGGAGT  148
      |||||   |||||||||||||||||||| |||||||||||||||| ||||
seq2  TGGCT--GATATGCTTGGCCCAGGATGGCCACTGTTAGGAGGTAT-GAGT  140

seq1  AGGTCTGGCCTTGTTGGAGGAAGGAAGTCTGTCATGCTTTGAGACCTTCC  198
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  AGGTCTGGCCTTGTT-GAGGAA-GAAGTCTGTCATGCTTTGAGACCTTCC  188

seq1  TCCTAGCTTCCTGGAAGCCAGTCTTCTCCAACTGGCCTTCAGATGAAGAT  248
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TCCTAGCTTCCTGGAAGCCAGTC-TCTCCAACT-GCCTTCAGATGAAGAT  236

seq1  CTAGAACTCTCAGCTCCTCCTGAACCATGCCTGCCCTGGCACTGCCATGC  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTAGAACTCTCAGCTCCT-CTGAACCATGCCTGCCCTGGCACTGCCATGC  285

seq1  TCCTGCCTTGATGATAATGGACTGAAACTCTGAACCTGTAGGACAGGCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTGATGATAATGGACTGAAACTCTGAACCTGTAGGACAGGCCC  335

seq1  AATTAAATGGTCTCCTTTTAAGAGTTGCCATGGTCATAGTGTCTGTTTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGGTCTCCTTTTAAGAGTTGCCATGGTCATAGTGTCTGTTTAC  385

seq1  AGCAGTAAAACCCTAACTAAGACATATTATATCTGGACAAAAATAAAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAAACCCTAACTAAGACATATTATATCTGGACAAAAATAAAATT  435

seq1  TTTCTTATTCTCAAAGATTATTGCAAATTTTTACACATAAAGCAACAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTCTCAAAGATTATTGCAAATTTTTACACATAAAGCAACAGGA  485

seq1  CACTTGAGCATATTGCTCAATTATTACATTGAAAATATATAGTGCTGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGCATATTGCTCAATTATTACATTGAAAATATATAGTGCTGGGT  535

seq1  AGTCTTAAAGGATATTGTTAAAAAGAAACATATATGGATTACATATAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAAAGGATATTGTTAAAAAGAAACATATATGGATTACATATAGTA  585

seq1  TAGAACCATAGTTACATGATTAGAGGTGAGAGAAGTTACTTATGAGAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCATAGTTACATGATTAGAGGTGAGAGAAGTTACTTATGAGAGTG  635

seq1  TTAAGAACCACTTGGTCAATAATGAGCCATTCTTTGAATATCTTCTAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCACTTGGTCAATAATGAGCCATTCTTTGAATATCTTCTAGGT  685

seq1  CCTTGCTCCTTCAGTCATCTCTGTGATCTGTTAAGTACCATTTACATATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTCCTTCAGTCATCTCTGTGATCTGTTAAGTACCATTTACATATC  735

seq1  AACTAGAAACTGTTTCTCAAGTCTACTTTCTCTGAATGTCTAATTAAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAACTGTTTCTCAAGTCTACTTTCTCTGAATGTCTAATTAAAAT  785

seq1  TAATAAGAAAAAATTTGAAAAGCAATTATGGCAAGAGGCCAGAAACATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAAAAAATTTGAAAAGCAATTATGGCAAGAGGCCAGAAACATTT  835

seq1  CTTTCTTCTTTTACAATTAATTTCATGCTTATTTTGTAAGAATATTTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTTTACAATTAATTTCATGCTTATTTTGTAAGAATATTTATT  885

seq1  AAGGTTTTGTAAAAAGGATGGATTAAGAATGACCACTTGAAGACAATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTGTAAAAAGGATGGATTAAGAATGACCACTTGAAGACAATTTT  935

seq1  TTTTCTCTCAATGAATGATTTTCATTTTACTGCTCAAATTTCAATATATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCAATGAATGATTTTCATTTTACTGCTCAAATTTCAATATATT  985

seq1  CTTTAATCTACAACATCCACATTTCATTGTGGGGCAAAGTGGACTGTGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCTACAACATCCACATTTCATTGTGGGGCAAAGTGGACTGTGCC  1035

seq1  ACCAGACAGGAGAACTGGTAAGGTTGGGTCTCTATCTATGCCCCTGAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAGGAGAACTGGTAAGGTTGGGTCTCTATCTATGCCCCTGAGCT  1085

seq1  AAGGCTGTCCCATAACCCTTAAAGAATTAGAAGCAGTCATTAATAGTCTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTCCCATAACCCTTAAAGAATTAGAAGCAGTCATTAATAGTCTC  1135

seq1  TCAACCAAACAAATCCCAGGAACAGATGGGTTTAGTGCAGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAACAAATCCCAGGAACAGATGGGTTTAGTGCAGAATTC  1180

seq1: chr5_15010137_15010894
seq2: B6Ng01-249M07.g_318_1073

seq1  GGATAGTTTGAAGAGTATTGGGATTAGGTCTTCTTTGAAGGTCTGATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTTTGAAGAGTATTGGGATTAGGTCTTCTTTGAAGGTCTGATAGA  50

seq1  ATTCTGCACTAAACCCATCTAGTCCTGGGCTTTGTTTGGTTGGGAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCACTAAACCCATCTAGTCCTGGGCTTTGTTTGGTTGGGAGACTT  100

seq1  TTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGAGTGTTAGACTGTTT  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGAGTGATAGACTGTTT  150

seq1  ATCTAATCCTGGTTTCATTTTGGTACCTAGTGTCTGTCTAGAAAATTGTC  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCCTGGTTTCATTTTGGTACCTAGTGTCTGTCTAGAAAATTGTC  200

seq1  CATTTCATCCAATTTTTTCAGTATTGTTGAGTATAGTCTTTTGTAATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATCCAATTTTTTCAGTATTGTTGAGTATAGTCTTTTGTAATAGG  250

seq1  AAATTATGATTTTTGAATATTCTGTTTATTCTGTTGTTATTTCTCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGATTTTTGAATATTCTGTTTATTCTGTTGTTATTTCTCCCTTT  300

seq1  TCAATTCTGATTTTGTTAATTTGGATACTGTCTCTTTGCCCTCTGGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAATTCTGATTTTGTTAATTTGGATACTGTCTCTTTGCCCTCTGGTTAG  350

seq1  TCTGGCTAAGGGATTATCTATTGTGTTGCTTTCTCAAAGAACCAGCTCCC  400
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  TCTGGCTAAGGGTTTATCTATTTTGTTGCTTTCTCAAAGAACCAGCTCCC  400

seq1  GGTTTTATTGA-TTCTTTGTTTAGTTCTTTTGTTTCTACTTGGTTGATTT  449
      ||||||||||| || ||||| |||||||||||||||||||||||||||||
seq2  GGTTTTATTGATTTTTTTGTATAGTTCTTTTGTTTCTACTTGGTTGATTT  450

seq1  CAGCTCTGTATTTGATTATTTCCTGACATCTACTCCTCTTGGGTGTATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGTATTTGATTATTTCCTGACATCTACTCCTCTTGGGTGTATGT  500

seq1  TGGGAACAAAATACAAGAAGGGGGGGGGTCTTGGACTGGGGCCTGGGGAG  549
      ||||||||||||| |||||  |||||||||||||||||||||||||||||
seq2  TGGGAACAAAATAAAAGAA-AGGGGGGGTCTTGGACTGGGGCCTGGGGAG  549

seq1  AAGTAGGCTAAGAAATAAATGCCCACACCCCACCAGAGTTTT-CCTATTC  598
      ||||||||| |||||||||||||||||| || |||||||||| |||||||
seq2  AAGTAGGCT-AGAAATAAATGCCCACACGCCGCCAGAGTTTTCCCTATTC  598

seq1  TCT-GGTCAGTCAGGCATGGGAGGGCTGCTATCTACTCTATCCACTCATC  647
      ||| ||||  |||||||||||||||||||||||||| |||||||||||||
seq2  TCTGGGTCTTTCAGGCATGGGAGGGCTGCTATCTACCCTATCCACTCATC  648

seq1  CCTGGGTGGGCATTCCTCTATCCCACTCTTCACTGGGTGGTCAAGGGGCA  697
      ||||||||||||||||||||||||||||||||  |||| ||||| |||||
seq2  CCTGGGTGGGCATTCCTCTATCCCACTCTTCAGGGGGT-GTCAA-GGGCA  696

seq1  GCCCTGCCTGGGAAC-ACCCCCCCCAGCTACTTTGCTAAAGCCCCCAGGG  746
      |||||| ||||||||  |||||||||||||||||||| ||  ||||||||
seq2  GCCCTG-CTGGGAACGCCCCCCCCCAGCTACTTTGCTTAA-ACCCCAGGG  744

seq1  TTGTGGGAGAGA  758
      ||||||||||||
seq2  TTGTGGGAGAGA  756