BAC Information

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BAC

Clone NameB6Ng01-250P17
Chromosome5 (Build37)
Map Location 73,951,723 - 74,083,415
singlet/doubletdoublet
Overlap geneDcun1d4, BC031901, Sgcb, Spata18
Upstream geneZar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250P17.bB6Ng01-250P17.g
ACCGA058373GA058374
length1,1251,165
definitionB6Ng01-250P17.b B6Ng01-250P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,951,723 - 73,952,853)(74,082,246 - 74,083,415)
sequence
gaattcattcaccaactgaaatgttggatatctgtaaatgagaccaaaat
gtgggttgctttttttcataaaataatttctattgggcgttgctgtgaca
tgaacagcagccagcctattaactgtgaatgccttgtgtcgtcagtattt
gcattacattcataaaagtgtgcaagtcctgtgactcccagcttaactaa
atactgttatgccacttaacgagcacagcaaactggtttaagtttcaatg
aaattgatgtaaaatgatagcccataaataaacagatatttgtgtttggt
ttcagaactgatttgtggggtctttgtactctgggtttctctgccaaaac
catttttaaagtacttttttaaaaaatttaaatgttttatcctttgcctt
tcagcctgttctattaaaaaaaaatcttacaggttcaggggggaaatgca
agagtaatccaatgaatatgtatattcctgtaacatagacacaccttagg
gcatttcctgggtgggggcaggggaggaagacagacagatactacttcat
tttctgaatcgtttgacactgaattacattatgacacagcatactgacct
tttagaatgagatagaatctattcatggtgacactatgcagtggtcacac
tcaagaatttcagcaatggtaatgttacttgatacacaaaattaaaatct
gcctaattgtatcaataataggtattttatttcccaaccaaggataagaa
ttttataagaatgtttccgtgtagagcatcttaaaagtcttggcaaggac
agtttaggcactcatcgagttgtggtgacagaatgatttgttaccatcga
ctctattgtgcttttctaaacattgaatgctaatgctaagtgatcataag
ccaagagctaggcaaccatttttactacccataaaggttactgtgcagga
agctgtgtgtaccgggcctgctttctgctctgtgtcccatatagaatgtg
agctgagagagggcctttgaccatctggagactagaacgtgtattgggaa
gaagtcatagttactaggtctgcaagcacttgtcacatgtaagtaatctg
ggcaggatatggatgtaaatgagaa
gaattcaatgtccttgaattcacaaaggagccgtgggcagagccaggcat
ctgccttaaatccaaggtctgagaaggagcccaaagatcaaagcatctga
tcccggtacccaaagagcaaagggttggttcctgttcgataactgagttg
tgcgtggctccaggagctaggggtggagtatgagaccagagaaagtgggc
agatcggctgctgtctcagaggcagaggccagtgttcgcgcctttggttc
taccagtgtctgccactcttctccactgacgtagtttagatatggttgaa
gtgtgccccccagtgacccgtgtaccagagattggcctgaagcacagtgg
cagtgaggtagtagaagctctaatatcaggacccaggggaagacatttgc
tcataacagcttgcatcatcatgagtggcttagtgttgtcttacaggagt
caaacaggtcttgggagactgagagtattttttgtgaaaatgtatatccc
cttgagtccctttctggaatatgccatccaccactgtcacatgctctctt
gtcaatgtgaggcaatccaccgtaagtccctcaccaaagtctactagatg
cctgtacgcttgcttagctatcagaattgtaaataaacagacttctttat
taggtgcctaacccctggcgttctagtatcacaaagctacaacatgcacc
tgtttctcacagttctttcctccccacttcaaatatatccctcctacaga
ctcctctgtaagcctttgcttttgctctctgcctttcagcacacaagggg
aggaactcccacctgctagtaggaaaccttattaaagtcaaaagagtctt
cccggctagaggaaaacaccaaaagagaggcaaaattaaaaacactaaaa
agaactccaattgacagtatgtatctgcaagatgatgccctaaagggagt
caatgtaggttaatgttgatcttctgtcttcttttcctcttggttcacta
tatctaccagagcccttagtacctcttcagccccttacacaaatgagtca
tgtcctatggatgaggccacttcctcaattcaagacatgacctaggaaac
acatagagctcttggaactgagaattctgtctcgagtgaatctcttcact
agctgagatgtgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73951723_73952853
seq2: B6Ng01-250P17.b_47_1171

seq1  GAATTCATTCACCAACTGAAATGTTGGATATCTGTAAATGAGACCAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACCAACTGAAATGTTGGATATCTGTAAATGAGACCAAAAT  50

seq1  GTGGGTTGCTTTTTTTCATAAAATAATTTCTATTGGGCGTTGCTGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGCTTTTTTTCATAAAATAATTTCTATTGGGCGTTGCTGTGACA  100

seq1  TGAACAGCAGCCAGCCTATTAACTGTGAATGCCTTGTGTCGTCAGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCAGCCAGCCTATTAACTGTGAATGCCTTGTGTCGTCAGTATTT  150

seq1  GCATTACATTCATAAAAGTGTGCAAGTCCTGTGACTCCCAGCTTAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACATTCATAAAAGTGTGCAAGTCCTGTGACTCCCAGCTTAACTAA  200

seq1  ATACTGTTATGCCACTTAACGAGCACAGCAAACTGGTTTAAGTTTCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTATGCCACTTAACGAGCACAGCAAACTGGTTTAAGTTTCAATG  250

seq1  AAATTGATGTAAAATGATAGCCCATAAATAAACAGATATTTGTGTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATGTAAAATGATAGCCCATAAATAAACAGATATTTGTGTTTGGT  300

seq1  TTCAGAACTGATTTGTGGGGTCTTTGTACTCTGGGTTTCTCTGCCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACTGATTTGTGGGGTCTTTGTACTCTGGGTTTCTCTGCCAAAAC  350

seq1  CATTTTTAAAGTACTTTTTTAAAAAATTTAAATGTTTTATCCTTTGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAGTACTTTTTTAAAAAATTTAAATGTTTTATCCTTTGCCTT  400

seq1  TCAGCCTGTTCTATTAAAAAAAAATCTTACAGGTTCAGGGGGGAAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGTTCTATTAAAAAAAAATCTTACAGGTTCAGGGGGGAAATGCA  450

seq1  AGAGTAATCCAATGAATATGTATATTCCTGTAACATAGACACACCTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATCCAATGAATATGTATATTCCTGTAACATAGACACACCTTAGG  500

seq1  GCATTTCCTGGGTGGGGGCAGGGGAGGAAGACAGACAGATACTACTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCTGGGTGGGGGCAGGGGAGGAAGACAGACAGATACTACTTCAT  550

seq1  TTTCTGAATCGTTTGACACTGAATTACATTATGACACAGCATACTGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATCGTTTGACACTGAATTACATTATGACACAGCATACTGACCT  600

seq1  TTTAGAATGAGATAGAATCTATTCATGGTGACACTATGCAGTGGTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGAGATAGAATCTATTCATGGTGACACTATGCAGTGGTCACAC  650

seq1  TCAAGAATTTCAGCAATGGTAATGTTACTTGATACACAAAATTAAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATTTCAGCAATGGTAATGTTACTTGATACACAAAATTAAAATCT  700

seq1  GCCTAATTGTATCAATAATAGGTATTTTATTTCCCAACCAAGGATAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTGTATCAATAATAGGTATTTTATTTCCCAACCAAGGATAAGAA  750

seq1  TTTTATAAGAATGTTTCCGTGTAGAGCATCTTAAAAGTCTTGGCAAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGAATGTTTCCGTGTAGAGCATCTTAAAAGTCTTGGCAAGGAC  800

seq1  AGTTTAGGCACTCATCGAGTTGTGGTGACAGAATGATTTGTTACCATCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGCACTCATCGAGTTGTGGTGACAGAATGATTTGTTACCATCGA  850

seq1  CTCTATTGTGCTTTTCTAAACATTGAATGCTAATGCTAAGTGATCATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTGTGCTTTTCTAAACATTGAATGCTAATGCTAAGTGATCATAAG  900

seq1  CCAAGAGCTAGGCAACCA-TTTTACTACCCAT-AAGGGTACTGTGCAGGA  948
      |||||||||||||||||| ||||||||||||| |||| ||||||||||||
seq2  CCAAGAGCTAGGCAACCATTTTTACTACCCATAAAGGTTACTGTGCAGGA  950

seq1  AGCTGTGTGTACC-GGCCTGCTTTCTGCTCTGTGTCCCATATTAGAATGT  997
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  AGCTGTGTGTACCGGGCCTGCTTTCTGCTCTGTGTCCCATA-TAGAATGT  999

seq1  GAGCTGAGGAGAGGGCCTTTGACCCATCCTGGAAGACTAGAACGTGTATG  1047
      ||||||| |||||||||||||| |||| |||| |||||||||||||||| 
seq2  GAGCTGA-GAGAGGGCCTTTGA-CCAT-CTGG-AGACTAGAACGTGTATT  1045

seq1  GGGAAGGAAGTCATAGTTACTA-GTCTGGCAAAGCAC-TGTCAACATGTA  1095
      ||||| |||||||||||||||| |||||   |||||| |||| |||||||
seq2  GGGAA-GAAGTCATAGTTACTAGGTCTG--CAAGCACTTGTC-ACATGTA  1091

seq1  AGTTAATCTGGG-AAGATATGGATGTAAAAATGAGAA  1131
      || ||||||||| | |||||||||||  |||||||||
seq2  AG-TAATCTGGGCAGGATATGGATGT--AAATGAGAA  1125

seq1: chr5_74082246_74083415
seq2: B6Ng01-250P17.g_67_1231 (reverse)

seq1  TTTCTACATCTCAGCTGGGTGAGAGATTTCACTCCGAGACCCAGAATCTC  50
      |||| ||||||||||| |   ||||| |||||| |||||  ||||||   
seq2  TTTC-ACATCTCAGCTAGTGAAGAGA-TTCACT-CGAGA--CAGAATTCT  45

seq1  CAGTTTCAAGAGCTTCTATTGTTGTTTCCTAGGTCATGTCCTTGAA-TGA  99
      ||||| ||||||| |||||   ||||||||||||||||| |||||| |||
seq2  CAGTTCCAAGAGC-TCTAT--GTGTTTCCTAGGTCATGT-CTTGAATTGA  91

seq1  GG-AGTGGCCTCATCCATAGGACCATGACTCCATTTGTGT-AGGGGCTG-  146
      || ||||||||||||||||||| ||||||| ||||||||| |||||||| 
seq2  GGAAGTGGCCTCATCCATAGGA-CATGACT-CATTTGTGTAAGGGGCTGA  139

seq1  AGAGGTACTAAGGGCTCTGGTAGATATAGTGAACCAAGAGGAAA--GAGA  194
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  AGAGGTACTAAGGGCTCTGGTAGATATAGTGAACCAAGAGGAAAAGAAGA  189

seq1  CAGAAGATCAACATTAACCTACATTGACTCCCTTTAGGGCATCATCTTGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATCAACATTAACCTACATTGACTCCCTTTAGGGCATCATCTTGC  239

seq1  AGATACATACTGTCAATTGGAGTTCTTTTTAGTGTTTTTAATTTTGCCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATACTGTCAATTGGAGTTCTTTTTAGTGTTTTTAATTTTGCCTC  289

seq1  TCTTTTGGTGTTTTCCTCTAGCCGGGAAGACTCTTTTGACTTTAATAAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTGTTTTCCTCTAGCCGGGAAGACTCTTTTGACTTTAATAAGG  339

seq1  TTTCCTACTAGCAGGTGGGAGTTCCTCCCCTTGTGTGCTGAAAGGCAGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACTAGCAGGTGGGAGTTCCTCCCCTTGTGTGCTGAAAGGCAGAG  389

seq1  AGCAAAAGCAAAGGCTTACAGAGGAGTCTGTAGGAGGGATATATTTGAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGCAAAGGCTTACAGAGGAGTCTGTAGGAGGGATATATTTGAAG  439

seq1  TGGGGAGGAAAGAACTGTGAGAAACAGGTGCATGTTGTAGCTTTGTGATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGAAAGAACTGTGAGAAACAGGTGCATGTTGTAGCTTTGTGATA  489

seq1  CTAGAACGCCAGGGGTTAGGCACCTAATAAAGAAGTCTGTTTATTTACAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACGCCAGGGGTTAGGCACCTAATAAAGAAGTCTGTTTATTTACAA  539

seq1  TTCTGATAGCTAAGCAAGCGTACAGGCATCTAGTAGACTTTGGTGAGGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAGCTAAGCAAGCGTACAGGCATCTAGTAGACTTTGGTGAGGGA  589

seq1  CTTACGGTGGATTGCCTCACATTGACAAGAGAGCATGTGACAGTGGTGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGGTGGATTGCCTCACATTGACAAGAGAGCATGTGACAGTGGTGGA  639

seq1  TGGCATATTCCAGAAAGGGACTCAAGGGGATATACATTTTCACAAAAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATTCCAGAAAGGGACTCAAGGGGATATACATTTTCACAAAAAAT  689

seq1  ACTCTCAGTCTCCCAAGACCTGTTTGACTCCTGTAAGACAACACTAAGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGTCTCCCAAGACCTGTTTGACTCCTGTAAGACAACACTAAGCC  739

seq1  ACTCATGATGATGCAAGCTGTTATGAGCAAATGTCTTCCCCTGGGTCCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGATGATGCAAGCTGTTATGAGCAAATGTCTTCCCCTGGGTCCTG  789

seq1  ATATTAGAGCTTCTACTACCTCACTGCCACTGTGCTTCAGGCCAATCTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAGCTTCTACTACCTCACTGCCACTGTGCTTCAGGCCAATCTCT  839

seq1  GGTACACGGGTCACTGGGGGGCACACTTCAACCATATCTAAACTACGTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACGGGTCACTGGGGGGCACACTTCAACCATATCTAAACTACGTCA  889

seq1  GTGGAGAAGAGTGGCAGACACTGGTAGAACCAAAGGCGCGAACACTGGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAGAGTGGCAGACACTGGTAGAACCAAAGGCGCGAACACTGGCC  939

seq1  TCTGCCTCTGAGACAGCAGCCGATCTGCCCACTTTCTCTGGTCTCATACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGAGACAGCAGCCGATCTGCCCACTTTCTCTGGTCTCATACT  989

seq1  CCACCCCTAGCTCCTGGAGCCACGCACAACTCAGTTATCGAACAGGAACC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTAGCTCCTGGAGCCACGCACAACTCAGTTATCGAACAGGAACC  1039

seq1  AACCCTTTGCTCTTTGGGTACCGGGATCAGATGCTTTGATCTTTGGGCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTGCTCTTTGGGTACCGGGATCAGATGCTTTGATCTTTGGGCTC  1089

seq1  CTTCTCAGACCTTGGATTTAAGGCAGATGCCTGGCTCTGCCCACGGCTCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGACCTTGGATTTAAGGCAGATGCCTGGCTCTGCCCACGGCTCC  1139

seq1  TTTGTGAATTCAAGGACATTGAATTC  1170
      ||||||||||||||||||||||||||
seq2  TTTGTGAATTCAAGGACATTGAATTC  1165