BAC Information

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BAC

Clone NameB6Ng01-251A04
Chromosome5 (Build37)
Map Location 82,147,148 - 82,212,585
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251A04.bB6Ng01-251A04.g
ACCGA058393GA058394
length1,1511,148
definitionB6Ng01-251A04.b B6Ng01-251A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,147,148 - 82,148,300)(82,211,430 - 82,212,585)
sequence
gaattctatagacttcagtgccgcctacagttccaacccatgtttcatct
tatgatgaagacatgagaagtaaatgtccttatttgttgaaaaaagatca
cattttagcagtattctgaatatttcagaacaaactaggttgaaaaggca
gttttataatactaaaatgtaactgtgcgtagaatgtaaaacaggttctt
aatacttactgtctcattgttcacatatgctagaatgatgcagggataca
cgtcttaaaaatgtttctttaaagaagaaactggagagaatcaaagtaat
tcagtgtctaactcatgtaggaagagggtgtcacctcagtgaagagtact
gaaaaatctatatactgtgttaataacttggtactttcaagacactcata
ccaagtgttactgtactccagattgagttctttttaaaaccatgaggcaa
acgtctcatctccgtgtttcatgtctgcagacttacattctttggatgtt
tgcatgtgttgacatatttgagctatgcatggtcagagtgctgttcatag
actcctagacatcatctgagctatcctttttcatcctttcattctcgccg
agctgtcctttctgacatttagaagcagattgggtgagatcaaattaaaa
gaaaaatcataaattttctgtaactcttatgaaaatatctgtcacttccc
gtatgaatagaaacgtcggagaaaagagaaaaatgatgtttacgtaaaaa
tttctaacaagtgagaaaagaattattgaagttcctgaaactgtatcttg
ttgagtattttatcatgctcctcagagactgtcttcccatcttctcatag
gaagacggttttcttcaagaattttctttgtctgtcttgtttctatgttt
tataagtcccctgagtattctttgcagcaacattcactgagttatgatcc
cttcagcaagtttctcatctaagtcttttattttccatgcttatttttgt
ataaaggaaggatctatacatgaaattgcattattttctgttcattatgc
aaggtaataaatagaaatgattcacattttattgtggaactactacttcc
aaatattttatgaatggacatctgacggttttccctaaacagtactaatg
a

gaattcttgtgatgctattaaagtgtttacaggtagtccctctggttgtg
tcttaacattccatttcagttctccaagcgtttaatttgattttatgttt
tagaattctggagtacactttcaaaacactttagacagtgcaactatgga
tacaggaaaacaagctgagttctaaggttgattttcatcggctgagaaag
gcagaacatattggctgaaatgcttgtaggtattaagataagtattcact
acataaaaccaaattccagacaaacacttcctcagactctgacgcatgtc
agaaccagtcagttactgaccatagcataagtcacaaggaatcacagaca
gccatcataggaggttcatctacttttcatgctataatcatgaagacatt
tgaaaatactttggtagtctggatagaaatgtatattaatcattactttg
ggaatgaggagacttttgctgataaaaatgaaaagaatgactatctaaaa
tccagttttctttcttactgtcctcagccatttaaatatctcatgtacca
tttgagaccatgtaatgttagttacatacatgttgagtattacttcaagc
gagggcttcggcggtaaggacaagagtaggtaatagtacaagatgacctg
ctattttgcaaacagcataaagacagagattactcccggaacgtgttgct
aaagaagagacaggaaaacatgttcttaatcaaatcattgctcttttggg
gattcatctgacgttagaaatcaccttgtcaaagctgtgtttacactgta
cagcttcttttttttttttttttaagagcatcaaccttaccatgtcctag
ctatcagtcagcatctcttaaaggggaacattcctttagggaaggtatga
ggttccctgttcctactgattgcactcacatggggggtaggcaattatac
ttttgaatgggtggccaccactatgcagaaggagaaacaaacatggaaat
taaatcagctggtcaccaggtggctggaatctttcagctgaaaacttgca
cagggatctgtctgttggctacatctttgggttcaggtacttggatcttc
tcctggcttctcatgcaacttgaccagtcagttcggattggcttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82147148_82148300
seq2: B6Ng01-251A04.b_47_1197

seq1  GAATTCTATAGACTTCAGTGCCGCCTACAGTTCCAACCCATGTTTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGACTTCAGTGCCGCCTACAGTTCCAACCCATGTTTCATCT  50

seq1  TATGATGAAGACATGAGAAGTAAATGTCCTTATTTGTTGAAAAAAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAAGACATGAGAAGTAAATGTCCTTATTTGTTGAAAAAAGATCA  100

seq1  CATTTTAGCAGTATTCTGAATATTTCAGAACAAACTAGGTTGAAAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGCAGTATTCTGAATATTTCAGAACAAACTAGGTTGAAAAGGCA  150

seq1  GTTTTATAATACTAAAATGTAACTGTGCGTAGAATGTAAAACAGGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAATACTAAAATGTAACTGTGCGTAGAATGTAAAACAGGTTCTT  200

seq1  AATACTTACTGTCTCATTGTTCACATATGCTAGAATGATGCAGGGATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTACTGTCTCATTGTTCACATATGCTAGAATGATGCAGGGATACA  250

seq1  CGTCTTAAAAATGTTTCTTTAAAGAAGAAACTGGAGAGAATCAAAGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTAAAAATGTTTCTTTAAAGAAGAAACTGGAGAGAATCAAAGTAAT  300

seq1  TCAGTGTCTAACTCATGTAGGAAGAGGGTGTCACCTCAGTGAAGAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTAACTCATGTAGGAAGAGGGTGTCACCTCAGTGAAGAGTACT  350

seq1  GAAAAATCTATATACTGTGTTAATAACTTGGTACTTTCAAGACACTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCTATATACTGTGTTAATAACTTGGTACTTTCAAGACACTCATA  400

seq1  CCAAGTGTTACTGTACTCCAGATTGAGTTCTTTTTAAAACCATGAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTTACTGTACTCCAGATTGAGTTCTTTTTAAAACCATGAGGCAA  450

seq1  ACGTCTCATCTCCGTGTTTCATGTCTGCAGACTTACATTCTTTGGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCATCTCCGTGTTTCATGTCTGCAGACTTACATTCTTTGGATGTT  500

seq1  TGCATGTGTTGACATATTTGAGCTATGCATGGTCAGAGTGCTGTTCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTTGACATATTTGAGCTATGCATGGTCAGAGTGCTGTTCATAG  550

seq1  ACTCCTAGACATCATCTGAGCTATCCTTTTTCATCCTTTCATTCTCGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGACATCATCTGAGCTATCCTTTTTCATCCTTTCATTCTCGCCG  600

seq1  AGCTGTCCTTTCTGACATTTAGAAGCAGATTGGGTGAGATCAAATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCTTTCTGACATTTAGAAGCAGATTGGGTGAGATCAAATTAAAA  650

seq1  GAAAAATCATAAATTTTCTGTAACTCTTATGAAAATATCTGTCACTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCATAAATTTTCTGTAACTCTTATGAAAATATCTGTCACTTCCC  700

seq1  GTATGAATAGAAACGTCGGAGAAAAGAGAAAAATGATGTTTACGTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATAGAAACGTCGGAGAAAAGAGAAAAATGATGTTTACGTAAAAA  750

seq1  TTTCTAACAAGTGAGAAAAGAATTATTGAAGTTCCTGAAACTGTATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACAAGTGAGAAAAGAATTATTGAAGTTCCTGAAACTGTATCTTG  800

seq1  TTGAGTATTTTATCATGCTCCTCAGAGACTGTCTTCCCATCTTCTCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATTTTATCATGCTCCTCAGAGACTGTCTTCCCATCTTCTCATAG  850

seq1  GAAGACGGTTTTCTTCAAGAATTTTCTTTGTCTGTCTTGTTTCTATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGGTTTTCTTCAAGAATTTTCTTTGTCTGTCTTGTTTCTATGTTT  900

seq1  TATAAGTCCCCTGAGTATTCTTTGCAGCAACATTCACTGAGTTATGATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTCCCCTGAGTATTCTTTGCAGCAACATTCACTGAGTTATGATCC  950

seq1  CTTCAGCAAGTTTCTCATCTAAGTC-TTTATTTTCCATGCTTATTTTTGT  999
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTCAGCAAGTTTCTCATCTAAGTCTTTTATTTTCCATGCTTATTTTTGT  1000

seq1  ATAAA-GAAGGATCTATACATGAAATTGCATTA-TTTCTGTTCATTATGC  1047
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAAGGAAGGATCTATACATGAAATTGCATTATTTTCTGTTCATTATGC  1050

seq1  AAAGGTAATAAATAGAAATGAATTCACAATTTAATGTTGAAACATACTAC  1097
       ||||||||||||||||||| ||||||| |||| ||| |||   ||||||
seq2  -AAGGTAATAAATAGAAATG-ATTCACATTTTATTGTGGAA--CTACTAC  1096

seq1  TTTCAAATA--TTATGAAATGGACAATTCTGACAGTTTTCCCTAAACAGT  1145
      || ||||||  ||||| ||||||||  |||||| ||||||||||||||||
seq2  TTCCAAATATTTTATG-AATGGACA--TCTGACGGTTTTCCCTAAACAGT  1143

seq1  ACTAATGA  1153
      ||||||||
seq2  ACTAATGA  1151


seq1: chr5_82211430_82212585
seq2: B6Ng01-251A04.g_65_1212 (reverse)

seq1  CCAGAAG-CAAACAGAACTGACTGTGTCAGACTTGTGCAGTGGAGGACAG  49
      ||||||| ||| | |||||||||| |||| | |  ||||   ||    ||
seq2  CCAGAAGCCAATCCGAACTGACTG-GTCA-AGT--TGCATGAGA----AG  42

seq1  CCAGGGAGAAAAGATACAAGTACCTTTGAACACAAAGGAAGGAAGACAAC  99
      ||||   || ||||| ||||||||  ||||| |||||  | | || ||||
seq2  CCAG---GAGAAGATCCAAGTACC--TGAACCCAAAG--ATGTAGCCAAC  85

seq1  AGACAGAT-CCTGTGCAGGTTTTCAGCTGAAAGATTCAAGC--ACTGGTG  146
      |||||||| |||||||| ||||||||||||||||||| |||   ||||||
seq2  AGACAGATCCCTGTGCAAGTTTTCAGCTGAAAGATTCCAGCCACCTGGTG  135

seq1  ACAAGCTGAATTTAATTTTCATGTTTGTTTCTC--TCTGCATAGTTGGTG  194
      || ||||| ||||||||| ||||||||||||||  ||||||||| |||||
seq2  ACCAGCTG-ATTTAATTTCCATGTTTGTTTCTCCTTCTGCATAG-TGGTG  183

seq1  GC--ACCATTCAAAAGTATAATTGCCTA-CCCCCATGTGAGTGCAATCAG  241
      ||   ||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCACCCATTCAAAAGTATAATTGCCTACCCCCCATGTGAGTGCAATCAG  233

seq1  TAGGAACAGGGAA-CTCATA-CTTCC--TAAGGATTGTT-CCCTTTAAGA  286
      ||||||||||||| |||||| |||||   ||||| |||| ||||||||||
seq2  TAGGAACAGGGAACCTCATACCTTCCCTAAAGGAATGTTCCCCTTTAAGA  283

seq1  GATGCTGACTGATAGCTAGGACATGGTAAGGTTGATGCTCTTAAAAAAAA  336
      ||||||||||||||||||||||||||||||||||||||||||     |||
seq2  GATGCTGACTGATAGCTAGGACATGGTAAGGTTGATGCTCTT-----AAA  328

seq1  AAAAAAAAAAAAAAAAGCTGTACAGTGTAAACACAGCTTTGACAAGGTGA  386
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAGCTGTACAGTGTAAACACAGCTTTGACAAGGTGA  378

seq1  TTTCTAACGTCAGATGAATCCCCAAAAGAGCAATGATTTGATTAAGAACA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACGTCAGATGAATCCCCAAAAGAGCAATGATTTGATTAAGAACA  428

seq1  TGTTTTCCTGTCTCTTCTTTAGCAACACGTTCCGGGAGTAATCTCTGTCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTGTCTCTTCTTTAGCAACACGTTCCGGGAGTAATCTCTGTCT  478

seq1  TTATGCTGTTTGCAAAATAGCAGGTCATCTTGTACTATTACCTACTCTTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGTTTGCAAAATAGCAGGTCATCTTGTACTATTACCTACTCTTG  528

seq1  TCCTTACCGCCGAAGCCCTCGCTTGAAGTAATACTCAACATGTATGTAAC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCGCCGAAGCCCTCGCTTGAAGTAATACTCAACATGTATGTAAC  578

seq1  TAACATTACATGGTCTCAAATGGTACATGAGATATTTAAATGGCTGAGGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTACATGGTCTCAAATGGTACATGAGATATTTAAATGGCTGAGGA  628

seq1  CAGTAAGAAAGAAAACTGGATTTTAGATAGTCATTCTTTTCATTTTTATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAAAGAAAACTGGATTTTAGATAGTCATTCTTTTCATTTTTATC  678

seq1  AGCAAAAGTCTCCTCATTCCCAAAGTAATGATTAATATACATTTCTATCC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGTCTCCTCATTCCCAAAGTAATGATTAATATACATTTCTATCC  728

seq1  AGACTACCAAAGTATTTTCAAATGTCTTCATGATTATAGCATGAAAAGTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCAAAGTATTTTCAAATGTCTTCATGATTATAGCATGAAAAGTA  778

seq1  GATGAACCTCCTATGATGGCTGTCTGTGATTCCTTGTGACTTATGCTATG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCTCCTATGATGGCTGTCTGTGATTCCTTGTGACTTATGCTATG  828

seq1  GTCAGTAACTGACTGGTTCTGACATGCGTCAGAGTCTGAGGAAGTGTTTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAACTGACTGGTTCTGACATGCGTCAGAGTCTGAGGAAGTGTTTG  878

seq1  TCTGGAATTTGGTTTTATGTAGTGAATACTTATCTTAATACCTACAAGCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTTGGTTTTATGTAGTGAATACTTATCTTAATACCTACAAGCA  928

seq1  TTTCAGCCAATATGTTCTGCCTTTCTCAGCCGATGAAAATCAACCTTAGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCAATATGTTCTGCCTTTCTCAGCCGATGAAAATCAACCTTAGA  978

seq1  ACTCAGCTTGTTTTCCTGTATCCATAGTTGCACTGTCTAAAGTGTTTTGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTTGTTTTCCTGTATCCATAGTTGCACTGTCTAAAGTGTTTTGA  1028

seq1  AAGTGTACTCCAGAATTCTAAAACATAAAATCAAATTAAACGCTTGGAGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACTCCAGAATTCTAAAACATAAAATCAAATTAAACGCTTGGAGA  1078

seq1  ACTGAAATGGAATGTTAAGACACAACCAGAGGGACTACCTGTAAACACTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGGAATGTTAAGACACAACCAGAGGGACTACCTGTAAACACTT  1128

seq1  TAATAGCATCACAAGAATTC  1156
      ||||||||||||||||||||
seq2  TAATAGCATCACAAGAATTC  1148


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