BAC Information

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BAC

Clone NameB6Ng01-251A21
Chromosome5 (Build37)
Map Location 123,160,792 - 123,286,031
singlet/doubletdoublet
Overlap geneP2rx4, Camkk2, Anapc5
Upstream geneAtxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7
Downstream geneRnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251A21.bB6Ng01-251A21.g
ACCGA058425GA058426
length1,1701,145
definitionB6Ng01-251A21.b B6Ng01-251A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,284,850 - 123,286,031)(123,160,792 - 123,161,931)
sequence
gaattcaggaccttctgaagagcagtcaggtgctcttacctgctgagcca
tctcaccagcccctgacttattcttaatatttgacttactggcattttcc
aatcaaaagctaaagaaagacttttgaaagtggctctcctttgtgtgttg
ctgtgctttattgctttgagttatagcctgtgtgagctctgggctaaagg
taatttgctgttctgttctctccggtttatttcaaccccccccccattgt
tagtctaggtggctaccctccactcttggtgacagccttttgggagtaat
gttgtggcaaactggtctgactgtactgatgcctccatagaaataaaaaa
gtaggtgtttgccatctctcccagatgttcagggtagtaaatgccttttg
tattcgagacagtaattataagattaaaatacaaagatgtttggcttttg
tgtgtatttttcttctgccttcttgcttctatgagatagttcactcggca
aggtcattggaagcttggttatcgtagctagctcttgctgggctgcaaca
ttatatataacgctcagatttttttgtgggacaaaggggggaaaatatac
aaaggagcctgtaagatgaaacaaagggtaatacagtttgcccgaacttt
ttgtaagaggcaaagctttatagttttacaatcctcagggccgggagata
gcttggttacaagtgcttgactcataagtgtgaggatctgggctggattc
cctaggaccaccacttaaacaaatacacacagagaaacaaaatattgcca
gctgaggctacatagtgataccccatctcaagaaaacaaaacaaaacaaa
caaataagcaaacaactagggtccttgggaccctcaaggtggaagaaaaa
aagaactcctgcaagttcctctgcctccgtgtatgacctgtgacatggca
ccctacacacacacacacactcctacacacatacatacacctatagcaca
gacacacacccatacacaaataaaacactaatagaaatcatttgggccag
atctcactccactcataaacaagctggcctgggaacttagattcacttgg
cctccgccttcgaatgctaggaataaaagcatggaaccaacattggccta
ccagctcttgtcagccaaaa
gaattctgcggaaagacttgcccagaattcccagggatcttactcatgtg
atgaggaaataagcccatgatgatggtgtcatctctcattcctggattca
gcaactcggtgcactgggtcataaaacccacagtctttctgccctcacct
ctccatcattagcgccctgcagaagagggctcggtgggagagaaaccatc
tttaggatgggcagaggatcggggatggcttatatcaaacaaacccagga
ggaagtaacccaagagccaggcagtggtggcacatacctttcatcccagc
acagagtaggtagaggcaggtggatctctgagttcaaggctagcttggtc
tacagagtaggttccaggacagccagagccacaaagggaaaccctgtcga
aaagaaagaaagaaagaaaggaaggaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaaggaaggaagaaagaggggtggagag
atggctaagcagttaagagcactgactgctcttccagaggtcctgagttc
aattcccagcaaccacatggtggctcacaaccatctgcaatgtcatctga
agccttcttctagtgtgtctgaagacaagacaactacagtgtactcatat
acaatataaaataaacaagtaaatcttttttaaaaaaaagaaagaaagaa
agaaaagaaaaaatagaaaaggtaaaaacaatacctatttctgaagtctt
ttgagggtgtatctgaaacaacatagactggtgttctgtagcaatgtgac
atcagctcttggcagtgtttagattgctctgcactgattaagtaaaggta
ttacccttgccttattaacttatctcactgcaatcctgtgaagtcctgtt
atcctttctcagtgtaaaggcaggacaagctgagacgcagagcagttaag
tgacccagtgaccccagcactcacacaggaacccttcaagttgtagttaa
tcaagccagcagcaatgcccttactttcagaaggaaagagcagaagagga
tgaactgatagattcctaaggaaaatgaacacaggactgtaaaaggttcc
gacgggcttgaagaaaagcctcagacagtgaagttccctcaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123284850_123286031
seq2: B6Ng01-251A21.b_46_1215 (reverse)

seq1  TTTTGCCTGACAAGAACTGGTTAGCCCCATATGGTGGTCCATGCTTTTAA  50
      ||||| ||||||||| |||| ||| || || | | | |||||||||||| 
seq2  TTTTGGCTGACAAGAGCTGG-TAGGCCAATGTTG-GTTCCATGCTTTTAT  48

seq1  TCCTAGCACTCTGGAGGCGGAGG-CAAGTGGATCTTAG-TCCCAGGCCAG  98
      |||||||| || | ||||||||| |||||| |||| || |||||||||||
seq2  TCCTAGCATTC-GAAGGCGGAGGCCAAGTGAATCTAAGTTCCCAGGCCAG  97

seq1  CTTGGTTTATGGAGT-GAGTGAGATCTGCCCAAAATTGATTTCTAATTTA  147
      ||| |||||| |||| |||||||||||| || ||| |||||||||  |||
seq2  CTT-GTTTAT-GAGTGGAGTGAGATCTGGCCCAAA-TGATTTCTA--TTA  142

seq1  GTTGTTTTTATTTGTGTATGGGTGTGTGTCTGTGCCTATAGGTGTATGTA  197
      ||   ||||||||||||||||||||||||||||| |||||||||||||||
seq2  GT--GTTTTATTTGTGTATGGGTGTGTGTCTGTG-CTATAGGTGTATGTA  189

seq1  TGTGTGTAGGAGTGTGTGTGTTGTGTGTAGGGGTGCCCATGTCACAGGTC  247
      |||||||||||||||||||| |||||||| ||||| ||||||||||||||
seq2  TGTGTGTAGGAGTGTGTGTG-TGTGTGTA-GGGTG-CCATGTCACAGGTC  236

seq1  ATACACGGAGGCAGAGGAACCTTGCAGGAGTTCTTTTTTTCTTCCACCTT  297
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATACACGGAGGCAGAGGAA-CTTGCAGGAGTTCTTTTTTTCTTCCACCTT  285

seq1  GAGGGTCCCAAGGACCCTAGTTGTTTGCTTATTTGTTTGTTTTGTTTTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCCAAGGACCCTAGTTGTTTGCTTATTTGTTTGTTTTGTTTTGT  335

seq1  TTTCTTGAGATGGGGTATCACTATGTAGCCTCAGCTGGCAATATTTTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAGATGGGGTATCACTATGTAGCCTCAGCTGGCAATATTTTGTT  385

seq1  TCTCTGTGTGTATTTGTTTAAGTGGTGGTCCTAGGGAATCCAGCCCAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTATTTGTTTAAGTGGTGGTCCTAGGGAATCCAGCCCAGAT  435

seq1  CCTCACACTTATGAGTCAAGCACTTGTAACCAAGCTATCTCCCGGCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACTTATGAGTCAAGCACTTGTAACCAAGCTATCTCCCGGCCCTG  485

seq1  AGGATTGTAAAACTATAAAGCTTTGCCTCTTACAAAAAGTTCGGGCAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTAAAACTATAAAGCTTTGCCTCTTACAAAAAGTTCGGGCAAAC  535

seq1  TGTATTACCCTTTGTTTCATCTTACAGGCTCCTTTGTATATTTTCCCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACCCTTTGTTTCATCTTACAGGCTCCTTTGTATATTTTCCCCCC  585

seq1  TTTGTCCCACAAAAAAATCTGAGCGTTATATATAATGTTGCAGCCCAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCACAAAAAAATCTGAGCGTTATATATAATGTTGCAGCCCAGCA  635

seq1  AGAGCTAGCTACGATAACCAAGCTTCCAATGACCTTGCCGAGTGAACTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGCTACGATAACCAAGCTTCCAATGACCTTGCCGAGTGAACTAT  685

seq1  CTCATAGAAGCAAGAAGGCAGAAGAAAAATACACACAAAAGCCAAACATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAAGCAAGAAGGCAGAAGAAAAATACACACAAAAGCCAAACATC  735

seq1  TTTGTATTTTAATCTTATAATTACTGTCTCGAATACAAAAGGCATTTACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTTAATCTTATAATTACTGTCTCGAATACAAAAGGCATTTACT  785

seq1  ACCCTGAACATCTGGGAGAGATGGCAAACACCTACTTTTTTATTTCTATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAACATCTGGGAGAGATGGCAAACACCTACTTTTTTATTTCTATG  835

seq1  GAGGCATCAGTACAGTCAGACCAGTTTGCCACAACATTACTCCCAAAAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATCAGTACAGTCAGACCAGTTTGCCACAACATTACTCCCAAAAGG  885

seq1  CTGTCACCAAGAGTGGAGGGTAGCCACCTAGACTAACAATGGGGGGGGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCAAGAGTGGAGGGTAGCCACCTAGACTAACAATGGGGGGGGGG  935

seq1  TTGAAATAAACCGGAGAGAACAGAACAGCAAATTACCTTTAGCCCAGAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAACCGGAGAGAACAGAACAGCAAATTACCTTTAGCCCAGAGC  985

seq1  TCACACAGGCTATAACTCAAAGCAATAAAGCACAGCAACACACAAAGGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGGCTATAACTCAAAGCAATAAAGCACAGCAACACACAAAGGAG  1035

seq1  AGCCACTTTCAAAAGTCTTTCTTTAGCTTTTGATTGGAAAATGCCAGTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTTCAAAAGTCTTTCTTTAGCTTTTGATTGGAAAATGCCAGTAA  1085

seq1  GTCAAATATTAAGAATAAGTCAGGGGCTGGTGAGATGGCTCAGCAGGTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATTAAGAATAAGTCAGGGGCTGGTGAGATGGCTCAGCAGGTAA  1135

seq1  GAGCACCTGACTGCTCTTCAGAAGGTCCTGAATTC  1182
      |||||||||||||||||||||||||||||||||||
seq2  GAGCACCTGACTGCTCTTCAGAAGGTCCTGAATTC  1170

seq1: chr5_123160792_123161931
seq2: B6Ng01-251A21.g_67_1211

seq1  GAATTCTGCGGAAAGACTTGCCCAGAATTCCCAGGGATCTTACTCATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGGAAAGACTTGCCCAGAATTCCCAGGGATCTTACTCATGTG  50

seq1  ATGAGGAAATAAGCCCATGATGATGGTGTCATCTCTCATTCCTGGATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAATAAGCCCATGATGATGGTGTCATCTCTCATTCCTGGATTCA  100

seq1  GCAACTCGGTGCACTGGGTCATAAAACCCACAGTCTTTCTGCCCTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCGGTGCACTGGGTCATAAAACCCACAGTCTTTCTGCCCTCACCT  150

seq1  CTCCATCATTAGCGCCCTGCAGAAGAGGGCTCGGTGGGAGAGAAACCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCATTAGCGCCCTGCAGAAGAGGGCTCGGTGGGAGAGAAACCATC  200

seq1  TTTAGGATGGGCAGAGGATCGGGGATGGCTTATATCAAACAAACCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATGGGCAGAGGATCGGGGATGGCTTATATCAAACAAACCCAGGA  250

seq1  GGAAGTAACCCAAGAGCCAGGCAGTGGTGGCACATACCTTTCATCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAACCCAAGAGCCAGGCAGTGGTGGCACATACCTTTCATCCCAGC  300

seq1  ACAGAGTAGGTAGAGGCAGGTGGATCTCTGAGTTCAAGGCTAGCTTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAGGTAGAGGCAGGTGGATCTCTGAGTTCAAGGCTAGCTTGGTC  350

seq1  TACAGAGTAGGTTCCAGGACAGCCAGAGCCACAAAGGGAAACCCTGTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTAGGTTCCAGGACAGCCAGAGCCACAAAGGGAAACCCTGTCGA  400

seq1  AAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAA  450

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAGGGGTGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAGGGGTGGAGAG  500

seq1  ATGGCTAAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTC  550

seq1  AATTCCCAGCAACCACATGGTGGCTCACAACCATCTGCAATGTCATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCAACCACATGGTGGCTCACAACCATCTGCAATGTCATCTGA  600

seq1  AGCCTTCTTCTAGTGTGTCTGAAGACAAGACAACTACAGTGTACTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTTCTAGTGTGTCTGAAGACAAGACAACTACAGTGTACTCATAT  650

seq1  ACAATATAAAATAAACAAGTAAATCTTTTTTAAAAAAAAGAAAGAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAAATAAACAAGTAAATCTTTTTTAAAAAAAAGAAAGAAAGAA  700

seq1  AGAAAAGAAAAAATAGAAAAGGTAAAAACAATACCTATTTCTGAAGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAAATAGAAAAGGTAAAAACAATACCTATTTCTGAAGTCTT  750

seq1  TTGAGGGTGTATCTGAAACAACATAGACTGGTGTTCTGTAGCAATGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTGTATCTGAAACAACATAGACTGGTGTTCTGTAGCAATGTGAC  800

seq1  ATCAGCTCTTGGCAGTGTTTAGATTGCTCTGCACTGATTAAGT-AAGGTA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCAGCTCTTGGCAGTGTTTAGATTGCTCTGCACTGATTAAGTAAAGGTA  850

seq1  TTACCCTTGCCTTATTAACTTATCTCACTGCAATCCTGTGAAGTCCTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTGCCTTATTAACTTATCTCACTGCAATCCTGTGAAGTCCTGTT  900

seq1  ATCC-TTCTCAGTGTAAAGGCAGGACAAGCTGAGACGCAGAGCAGTTAAG  948
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCTCAGTGTAAAGGCAGGACAAGCTGAGACGCAGAGCAGTTAAG  950

seq1  TGACCCAGTGACCCCAGCACTCACACAGGAA-CCTTCAGGTTTGTAGTTA  997
      ||||||||||||||||||||||||||||||| |||||| | |||||||||
seq2  TGACCCAGTGACCCCAGCACTCACACAGGAACCCTTCAAG-TTGTAGTTA  999

seq1  ATCAGGCCAGCAGCAATGCCCTTAC-TTCAGAAGGAAGGAGCAGAAGAAG  1046
      |||| |||||||||||||||||||| ||||||||||| |||||||||| |
seq2  ATCAAGCCAGCAGCAATGCCCTTACTTTCAGAAGGAAAGAGCAGAAGAGG  1049

seq1  ATGACCTGAATAGAATTCCTAGGAAAAAGGAACACAGGACTGTAAAAGTT  1096
      |||| ||| |||| ||||||| | |||| ||||||||||||||||||| |
seq2  ATGAACTG-ATAG-ATTCCTAAGGAAAATGAACACAGGACTGTAAAAGGT  1097

seq1  TCCCGAGGGGGTGAGGAGA--GCTCAGACAGTGAAGT--CCTCAAAGC  1140
      |||   |||  ||| || |   |||||||||||||||  |||||||||
seq2  TCCGACGGGCTTGAAGAAAAGCCTCAGACAGTGAAGTTCCCTCAAAGC  1145