BAC Information

Click to search

BAC

Clone NameB6Ng01-251B04
Chromosome5 (Build37)
Map Location 124,380,066 - 124,538,461
singlet/doubletdoublet
Overlap geneCcdc62, Hip1r, Vps37b, Abcb9
Upstream geneFbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr
Downstream geneOgfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251B04.bB6Ng01-251B04.g
ACCGA058439GA058440
length8731,116
definitionB6Ng01-251B04.b B6Ng01-251B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,537,594 - 124,538,461)(124,380,066 - 124,381,193)
sequence
gaattctactgtgtgtggtagcatatatctttccccatctgtctcctgtt
gcatgagcttgtctcatgtgactgaacagagctgaagggtgaagttcgtc
ttggtttgaaagttaggtgtgtggtgctataggtctgcttctctcccgaa
gcatgggcaggaaggtggtacaggaaggttgggactccatagctcctccc
actggcagggcctggggtctcaatgagctgtgtgacctggggtaagtcta
tcaacctttctgaaccatacctctctcttgtggggaatggcaagcacagg
gcttagtacatcatggtgggtgtccaagaattcacagggaccaaccctgg
gggcaatgacatagtcagagtagtctcaaagaaggccagtgaacctgagc
tggctctaccccaatccctccctcactgcctcactgcctcacccccgacc
ccgagtcccctcagttcctccttttagagtctgtgtgaaccaaaaaataa
aaaataaaaataaaaaaattttagccgggcatggtggcacatgcctttaa
tcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccag
cctggtctacaaagtgagttccaggacagccagagccatacagagaaacc
ctgtctcgaaaaaaccaaaaaataaaaaaaaaataaataaataaaaatag
agtctgtgtgatatgaggcagctactcagcctctgcttgttggtctctgt
gtctgtaaagcaggagtacagtccccacttcgattcagctgtgttgctgt
gacagaagtgcccgggataacagcttgaaggggagaaaaggttagcttgg
ctggtgtaatccggtttccagct
gaattcccgtaggtctccgtcgtttctccgcgggatccagcagtattatg
gtaaatgtggctggagagatggctcagtggttaagagcactcactgctct
tctgaaggtcctgagttcaattcccagcaaccacgtggtggctcacaacc
atccgtaatgagatctgacgccctcttctggggcgtctggagacagctac
agtgtacttacatatagtaaatatattatatatattaatgatataattac
taaaatatctttttaaaaaataataacatgtcacggttctcatcactact
aagagcagatcgatgatcgattgactggcagaccctctgtctccaatgat
cttggttcagaccagtgctgagagcccggcccggttcttcagactaaaca
tccacagggagggacccaggatcactgggacctagaaacggcttttaatt
cacttcgtctttcccgctgcgacgctctgggaaccttagaggggccgaag
gcttccggcgtgggaatgaatataggttcacgttcttgatccgcgagcga
gcacaggcgcaagtctcgcgagagcatcactcctgcgcaacgtccgagtg
cggcccgccggctggcccggcggtttgagtgcgcatgcgcgcatgcgtag
ctctgagggcgcgccgtcctgggctgtggctttgcccccgccgctgcggc
cgtgcgcctatggcgtctcggaggtgacccgctgctggcaccaactctct
ctgggggcgggggagtcatccatgaacccttcggcgaccttataccggcg
ccaggtgagcgccgccgccccgggacagggcgccgagaggccggccctag
ctgggactctagcgacgaggcacgagcaccgggagcgctgctgttgaacg
ttgggcagggacattgccctccctcgcttatttaacagtagccctagcga
gtggaccgacttctccttcccattgacagtctcgaaagtgaatttgccag
attgcactacgtatcagtgtagggtgacacgaacactttgtatgatggga
ttaatactgattacttcactgagcccgtcccctctacacgctgtcaccct
atagactggaatccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124537594_124538461
seq2: B6Ng01-251B04.b_45_917 (reverse)

seq1  AGCTGG-AACCGGATTACACCAGCCAAGCTAACC-TTTCTCCCCTTCAAG  48
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCTGGAAACCGGATTACACCAGCCAAGCTAACCTTTTCTCCCCTTCAAG  50

seq1  CTGTTATCCCGGGCAC-TCTGTCACAGCAACACAGCTG-ATCGAAGTGGG  96
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  CTGTTATCCCGGGCACTTCTGTCACAGCAACACAGCTGAATCGAAGTGGG  100

seq1  GACTGTACTCCTGCTTTACAGACACAGAGACCAACAAGCAGAGGCTGAGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACTCCTGCTTTACAGACACAGAGACCAACAAGCAGAGGCTGAGT  150

seq1  AGCTGCCTCATATCACACAGACTCTATTTTTATTTATTTA-TTTTTTTTT  195
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCTGCCTCATATCACACAGACTCTATTTTTATTTATTTATTTTTTTTTT  200

seq1  ATTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATGGCTCTGGCTGTCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATGGCTCTGGCTGTCC  250

seq1  TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTG  300

seq1  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCGGC  350

seq1  TAAAATTTTTTTATTTTTATTTTTTATTTTTTGGTTCACACAGACTCTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTTTATTTTTATTTTTTATTTTTTGGTTCACACAGACTCTAA  400

seq1  AAGGAGGAACTGAGGGGACTCGGGGTCGGGGGTGAGGCAGTGAGGCAGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAACTGAGGGGACTCGGGGTCGGGGGTGAGGCAGTGAGGCAGTG  450

seq1  AGGGAGGGATTGGGGTAGAGCCAGCTCAGGTTCACTGGCCTTCTTTGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGATTGGGGTAGAGCCAGCTCAGGTTCACTGGCCTTCTTTGAGA  500

seq1  CTACTCTGACTATGTCATTGCCCCCAGGGTTGGTCCCTGTGAATTCTTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGACTATGTCATTGCCCCCAGGGTTGGTCCCTGTGAATTCTTGG  550

seq1  ACACCCACCATGATGTACTAAGCCCTGTGCTTGCCATTCCCCACAAGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACCATGATGTACTAAGCCCTGTGCTTGCCATTCCCCACAAGAGA  600

seq1  GAGGTATGGTTCAGAAAGGTTGATAGACTTACCCCAGGTCACACAGCTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGGTTCAGAAAGGTTGATAGACTTACCCCAGGTCACACAGCTCA  650

seq1  TTGAGACCCCAGGCCCTGCCAGTGGGAGGAGCTATGGAGTCCCAACCTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCCCAGGCCCTGCCAGTGGGAGGAGCTATGGAGTCCCAACCTTC  700

seq1  CTGTACCACCTTCCTGCCCATGCTTCGGGAGAGAAGCAGACCTATAGCAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCACCTTCCTGCCCATGCTTCGGGAGAGAAGCAGACCTATAGCAC  750

seq1  CACACACCTAACTTTCAAACCAAGACGAACTTCACCCTTCAGCTCTGTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTAACTTTCAAACCAAGACGAACTTCACCCTTCAGCTCTGTTC  800

seq1  AGTCACATGAGACAAGCTCATGCAACAGGAGACAGATGGGGAAAGATATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGAGACAAGCTCATGCAACAGGAGACAGATGGGGAAAGATATA  850

seq1  TGCTACCACACACAGTAGAATTC  868
      |||||||||||||||||||||||
seq2  TGCTACCACACACAGTAGAATTC  873

seq1: chr5_124380066_124381193
seq2: B6Ng01-251B04.g_68_1183

seq1  GAATTCCCGTAGGTCTCCGTCGTTTCTCCGCGGGATCCAGCAGTATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTAGGTCTCCGTCGTTTCTCCGCGGGATCCAGCAGTATTATG  50

seq1  GTAAATGTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTCACTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTCACTGCTCT  100

seq1  TCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACGTGGTGGCTCACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACGTGGTGGCTCACAACC  150

seq1  ATCCGTAATGAGATCTGACGCCCTCTTCTGGGGCGTCTGGAGACAGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTAATGAGATCTGACGCCCTCTTCTGGGGCGTCTGGAGACAGCTAC  200

seq1  AGTGTACTTACATATAGTAAATATATTATATATATTAATGATATAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTACATATAGTAAATATATTATATATATTAATGATATAATTAC  250

seq1  TAAAATATCTTTTTAAAAAATAATAACATGTCACGGTTCTCATCACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCTTTTTAAAAAATAATAACATGTCACGGTTCTCATCACTACT  300

seq1  AAGAGCAGATCGATGATCGATTGACTGGCAGACCCTCTGTCTCCAATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGATCGATGATCGATTGACTGGCAGACCCTCTGTCTCCAATGAT  350

seq1  CTTGGTTCAGACCAGTGCTGAGAGCCCGGCCCGGTTCTTCAGACTAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCAGACCAGTGCTGAGAGCCCGGCCCGGTTCTTCAGACTAAACA  400

seq1  TCCACAGGGAGGGACCCAGGATCACTGGGACCTAGAAACGGCTTTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGGAGGGACCCAGGATCACTGGGACCTAGAAACGGCTTTTAATT  450

seq1  CACTTCGTCTTTCCCGCTGCGACGCTCTGGGAACCTTAGAGGGGCCGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCGTCTTTCCCGCTGCGACGCTCTGGGAACCTTAGAGGGGCCGAAG  500

seq1  GCTTCCGGCGTGGGAATGAATATAGGTTCACGTTCTTGATCCGCGAGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGGCGTGGGAATGAATATAGGTTCACGTTCTTGATCCGCGAGCGA  550

seq1  GCACAGGCGCAAGTCTCGCGAGAGCATCACTCCTGCGCAACGTCCGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCGCAAGTCTCGCGAGAGCATCACTCCTGCGCAACGTCCGAGTG  600

seq1  CGGCCCGCCGGCTGGCCCGGCGGTTTGAGTGCGCATGCGCGCATGCGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCGCCGGCTGGCCCGGCGGTTTGAGTGCGCATGCGCGCATGCGTAG  650

seq1  CTCTGAGGGCGCGCCGTCCTGGGCTGTGGCTTTGCCCCCGCCGCTGCGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGGCGCGCCGTCCTGGGCTGTGGCTTTGCCCCCGCCGCTGCGGC  700

seq1  CGTGCGCCTATGGCGTCTCGGAGGTGACCCGCTGCTGGCACCAACTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGCCTATGGCGTCTCGGAGGTGACCCGCTGCTGGCACCAACTCTCT  750

seq1  CTGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGACCTTATACCGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGACCTTATACCGGCG  800

seq1  CCAGGTGAGCGCCGCCGCCCCGGGACAGGGCGCCGAGAGGCCGGCCCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAGCGCCGCCGCCCCGGGACAGGGCGCCGAGAGGCCGGCCCTAG  850

seq1  CTGGGAC-CCAGCGACGAGGCACGAGCACC-GGAGCGCTGCTGTTGAACG  898
      ||||||| | |||||||||||||||||||| |||||||||||||||||||
seq2  CTGGGACTCTAGCGACGAGGCACGAGCACCGGGAGCGCTGCTGTTGAACG  900

seq1  TT-GGCAGGGACATTGCCCTCCCTCGCTTATTTAACAGTAG-CCTAGCGA  946
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGGGCAGGGACATTGCCCTCCCTCGCTTATTTAACAGTAGCCCTAGCGA  950

seq1  GTGGACCGACTTCTTCCTTCCCATTGACAGTCTCGAAAGTGAATTTGCCC  996
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  GTGGACCGACTTC-TCCTTCCCATTGACAGTCTCGAAAGTGAATTTGCC-  998

seq1  AAGGATTGCACTTAACGTATCAGTGTAGGGTGACACGAACACTTTTTGTA  1046
         |||||||||  ||||||||||||||||||||||||||||  ||||||
seq2  --AGATTGCACT--ACGTATCAGTGTAGGGTGACACGAACAC--TTTGTA  1042

seq1  TGATGGGTTTATTACCTGGTTACCTCCACTGAGCCCCGTCCCCCCCTCCC  1096
      ||||||| ||| || ||| ||| || ||||||| |||||   ||||||  
seq2  TGATGGGATTAATA-CTGATTA-CTTCACTGAG-CCCGT---CCCCTCTA  1086

seq1  CCCGCTGCCACCCCTAATAGACTGGAATCCAG  1128
      | ||||| |||||   ||||||||||||||||
seq2  CACGCTGTCACCC--TATAGACTGGAATCCAG  1116