BAC Information

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BAC

Clone NameB6Ng01-251B12
Chromosome5 (Build37)
Map Location 12,550,520 - 12,551,658
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneEG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, LOC668015, LOC100042917
Downstream geneLOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251B12.bB6Ng01-251B12.g
ACCGA058455GA058456
length1,0151,136
definitionB6Ng01-251B12.b B6Ng01-251B12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaaattatcagatcctactacaaaagcccatacttaaaaaaa
ctggaaaatctagatgaaatgaatggtttcctagacagataccctgtacc
aaatttaaatcaagaacagataaactagctgggtgtggtggtgcatgcct
ttaatcccagcacttgggaggcagaggttctgagttcaaggccagcctgg
tctacaaagtgagttccaggacagccaaggctacatagagaaaccctgtc
tcgaaaaacaaaaacaaacaaacaacaacaaaaaaaccaaaaacaaaaac
caaaccccaaaacaacaacaacaacaacaaaagaacagataaactaaaca
ggcccacatcccataaagaaatagaagaagtcattaaaaacctcccaacc
aaaacaaacaaacaaacaaagaagcccagggtcaaatggatttagtgcag
aattctaccagacctgcgaagacgaccttaaaccaagattcctcaaacta
ttccataaaatagaaacagaaggaacactacctaattcattctttgaagc
cacagttactctaaatgacacaaggaccaaccaaagaagaaaacgtcaga
ccaatctcacttatgattattgatgcaaaaatactcaataaaatttctgc
aaaccaaatccaagaacacatcacaacaatcactcaccacaatcaagtag
gttgcatcccagggatgcaaggttggttcaatatacaaaaattcattaac
ctagtcccctatataaacatactcaaaggaaaaaaaaaatcacgtgacca
tctctttagattcagaaaaagcatttgaaaaatacaacaccctttcatgt
tgaatgtattggagagatcaggaattcaaggcccatacctaaacaaataa
gagcaatttactgcataccaacagcaatatcaattcaaacggaggtagac
ttgaaacaatccgactaaaattggggagaagacagaatagtcatttccct
atatctatgtaatat
gaattccaaaattacatcagtcttcatggcagcattaaaaataaaacaac
aaagaacaccaggaacaaagacgtgtaacttcacactctgggtgggcaga
aacttgataggaaaagaaaaaaattaaagcactatcttggggctctgtct
cccttgcacatatctaacatatctaaatcttgtgtgtggaacacattgac
ttcaaagcaagattttggatggaaacaggccaaaaaaactaaagctgaga
cacttgaaccactacaggcaattgctcctcttgcatccttttgaaatgca
ttgcacatgaaaagaaaaattgattcccaaaatgcagctcttaagctgtc
ttcttaatgcctgtattaaaatatttccatcttcagtttcataattaatc
aaatactattttataatgtattctgaatccatagacaatttctcctcatc
ttgctacagaaaaaaaaatctaaaaactgcaatattttatttaaaggaag
ataccagagtcatttctttcctcgtcgatagcaatacctcaaagtcctct
agtgctaatgccaatgcacaatgataaagagttatgggaagatatatgca
aaactgaagagtgttccaggcattcaatggaagtggctgtgtacttttaa
cacaccaaacattagtcatcaaattaaataggatgaagacagtagagaac
acacctttaaaagaaatttgtgggtacctctacaatctcattgaagtcaa
gggagagcatcagtgatatgtaataggacaaaaatcagatgagaatatag
gtaggtgtaaagacgaggaaactttcagacaggctttgttgataggaact
agcaacttatccaacttatcgtaaagggtaagttagtggaattgtcagaa
caaccatgtctacctgttcaagttcacaaaggggtacagataggatagtt
tgcgatatgataaggttctaagtcaagaatgcgctatctatgatgcacta
cagcctgtcaatggattcagtcctgatttatttgtttcctttgtacaacc
tctttggccacacatatagaaagcatgattatggagcaatacacatatat
gctttctttctaacaaattttaatctgtgaacttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12550520_12551658
seq2: B6Ng01-251B12.g_63_1198 (reverse)

seq1  TGAAG-TCACAGGATAAAA-TTGTTAGATACCAAAAGCATATATGTGTAA  48
      ||||| ||||||  ||||| |||||||| |   |||||||||||||||| 
seq2  TGAAGTTCACAGATTAAAATTTGTTAGAAA--GAAAGCATATATGTGTAT  48

seq1  TGCT-CATAATCAATGCTTTCTATATGTGTGGCCAAAGAGGTTGTACAAA  97
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATAATC-ATGCTTTCTATATGTGTGGCCAAAGAGGTTGTACAAA  97

seq1  GGAAACAAATAAATCAAGGACTGAATCCATTGACAAGGCTGTAGTGCATC  147
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  GGAAACAAATAAATC-AGGACTGAATCCATTGAC-AGGCTGTAGTGCATC  145

seq1  ATAAGATAGCGCATTCTTGACTTAGAACCTTATCATATCGCAAACTATCC  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AGATAGCGCATTCTTGACTTAGAACCTTATCATATCGCAAACTATCC  194

seq1  TATCTGTACCCCTTTGTGAACTTGAACAGGTAGACATGGTTGTTCTGACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTACCCCTTTGTGAACTTGAACAGGTAGACATGGTTGTTCTGACA  244

seq1  ATTCCACTAACTTACCCTTTACGATAAGTTGGATAAGTTGCTAGTTCCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTAACTTACCCTTTACGATAAGTTGGATAAGTTGCTAGTTCCTA  294

seq1  TCAACAAAGCCTGTCTGAAAGTTTCCTCGTCTTTACACCTACCTATATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGCCTGTCTGAAAGTTTCCTCGTCTTTACACCTACCTATATTC  344

seq1  TCATCTGATTTTTGTCCTATTACATATCACTGATGCTCTCCCTTGACTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGATTTTTGTCCTATTACATATCACTGATGCTCTCCCTTGACTTC  394

seq1  AATGAGATTGTAGAGGTACCCACAAATTTCTTTTAAAGGTGTGTTCTCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATTGTAGAGGTACCCACAAATTTCTTTTAAAGGTGTGTTCTCTA  444

seq1  CTGTCTTCATCCTATTTAATTTGATGACTAATGTTTGGTGTGTTAAAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCATCCTATTTAATTTGATGACTAATGTTTGGTGTGTTAAAAGT  494

seq1  ACACAGCCACTTCCATTGAATGCCTGGAACACTCTTCAGTTTTGCATATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCACTTCCATTGAATGCCTGGAACACTCTTCAGTTTTGCATATA  544

seq1  TCTTCCCATAACTCTTTATCATTGTGCATTGGCATTAGCACTAGAGGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATAACTCTTTATCATTGTGCATTGGCATTAGCACTAGAGGACT  594

seq1  TTGAGGTATTGCTATCGACGAGGAAAGAAATGACTCTGGTATCTTCCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTATTGCTATCGACGAGGAAAGAAATGACTCTGGTATCTTCCTTT  644

seq1  AAATAAAATATTGCAGTTTTTAGATTTTTTTTTCTGTAGCAAGATGAGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATATTGCAGTTTTTAGATTTTTTTTTCTGTAGCAAGATGAGGA  694

seq1  GAAATTGTCTATGGATTCAGAATACATTATAAAATAGTATTTGATTAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTCTATGGATTCAGAATACATTATAAAATAGTATTTGATTAATT  744

seq1  ATGAAACTGAAGATGGAAATATTTTAATACAGGCATTAAGAAGACAGCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTGAAGATGGAAATATTTTAATACAGGCATTAAGAAGACAGCTT  794

seq1  AAGAGCTGCATTTTGGGAATCAATTTTTCTTTTCATGTGCAATGCATTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGCATTTTGGGAATCAATTTTTCTTTTCATGTGCAATGCATTTC  844

seq1  AAAAGGATGCAAGAGGAGCAATTGCCTGTAGTGGTTCAAGTGTCTCAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGCAAGAGGAGCAATTGCCTGTAGTGGTTCAAGTGTCTCAGCT  894

seq1  TTAGTTTTTTTGGCCTGTTTCCATCCAAAATCTTGCTTTGAAGTCAATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTTTGGCCTGTTTCCATCCAAAATCTTGCTTTGAAGTCAATGT  944

seq1  GTTCCACACACAAGATTTAGATATGTTAGATATGTGCAAGGGAGACAGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACACACAAGATTTAGATATGTTAGATATGTGCAAGGGAGACAGAG  994

seq1  CCCCAAGATAGTGCTTTAATTTTTTTCTTTTCCTATCAAGTTTCTGCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGATAGTGCTTTAATTTTTTTCTTTTCCTATCAAGTTTCTGCCCA  1044

seq1  CCCAGAGTGTGAAGTTACACGTCTTTGTTCCTGGTGTTCTTTGTTGTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTGTGAAGTTACACGTCTTTGTTCCTGGTGTTCTTTGTTGTTTT  1094

seq1  ATTTTTAATGCTGCCATGAAGACTGATGTAATTTTGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATGCTGCCATGAAGACTGATGTAATTTTGGAATTC  1136