BAC Information

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BAC

Clone NameB6Ng01-251D16
Chromosome5 (Build37)
Map Location 12,191,367 - 12,355,648
singlet/doubletdoublet
Overlap geneLOC100041626, EG668059
Upstream geneLOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneSema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251D16.bB6Ng01-251D16.g
ACCGA058551GA058552
length1,1591,178
definitionB6Ng01-251D16.b B6Ng01-251D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,354,504 - 12,355,648)(12,191,367 - 12,192,538)
sequence
gaattcttggactttgcttcccatccagctgttgtggaataagctcaact
acactctgtaagtaattctaataaatccccttccaggatttttgggatca
gattgggcagaatcttgcctctttaggcaatgcaaataggtgctaggatt
gtgggtttaaaatgcagcttcctacagtgtcatggttgggtggggtcaag
gagtatagagtacaattaattaactggattcttctctgaatcagaaggtc
gaggacttaacctcagtgatccatggaaaaaggtaagaagatgatgcagt
ccttccctggttttgtcaaggatacatcagatattgaagaaaatgcactg
cagagtccacttgtcttgccagcccagaatacaaggtgttccaagtctga
gacactttgtttaagcaaagagcaaagccactgctctgaggatggctggg
ttttagaatgggaaatttgtgtgtttgagagtgtgaactacctggatttc
taccacaaatttaattgtgccatgaagaagagcacagaagtcttccagag
tgagtgtcagaggaaatcacaagtgtccccaggagatgtggaaaatgaca
aagacaaagatacagaggagctagaccaaccctcaccaagcttgctcagg
gagaaaggctggaagttgagacctgtgatggtggagactgccctgacaag
gatcctgcttcttacagtgccaggcacctaggctgctgggcatggcttca
aagagcttttcgccagaagaagtgagaaagccacccagaactgtttggag
cccagatgcctgttaagacttacaattagggaattttctgtcagctcctg
ctgttacagcataggcacacaaaggcagttgtgtcttcgcagccatctgg
tttgtgtttgtttgtttgtttacagcttttcttaataaaattgttaaaag
ctgaaaaaaaaaaaagaagggtgagcttattcatcagttaactttccaag
atggcaattacattctgatcaaaaaaaaaagttaccttgccacattaggt
ataagaaaatatctatgttctaccttgtataaagatgcaacttgaaaaca
tttttatgtatctagaaatacttatcattaggtaattttgactgacattt
tggtgaaac
gaattcaccatttcggccctaactaggtactttttctgaacaaattatct
ttagaaaaaaaaatatcatattataaaaaaaatattgcctttggtcttca
aggcaaggaaataatgagctaatctcagcttacatgtattcaaactgggg
aaaaccaaatgttagtgagctgtctgagtggatatataacagaactctgg
tcataagtcctttcttaaagcaacaccttttccttggaccattgaacatt
tccctaagcctaggaaatttgcacattatgaagaaaattatttatttagc
tagaaaggttaatatggctttaaagaaaaataatggattcagaatttgaa
tgtgtttttgtctataaaagtcttaaatcctttataagccctgagttgtt
agtttgtggttaaataaaacataattatctgataaatctttgtactgtgg
tctgatttttcctgtagcaaatccaacaacctgagactaactagcacatt
ttctggcttttgcccatgaggagaaattgaaagaaattgagccagctttt
ctgtcctcgggcagatttttctaaaagctgtttcagtttgctagataagg
aaaaagttaaagctcttttggcatttttacagatttaaagtcactagaca
agatgaagattttttttttgagaaggaacacactgtattgtttttctgtt
ttcatatctattttaatcttgcatccatcaatctgttaataggccaattg
ctggtgtctagtttcaaagccaatgacgtacaaacactgcagatggttgg
tcctgaagttggaatggtaacccaccaataccaagcctgtaacttcatct
tactaagtggtatgttatttccaagccataatactaacaaaggctagaga
aagacaaggtacaatgaaaatcaccatcctcaatctcaaagatggaaata
gaaacaaattgacaagaggaaagatcacagtgcagaatcctctgccagct
ttggtgagagtatggaaggatggagaatctgaaaatacaaacttcactgg
tggagagcttgggttcggtggtcatctcatttctacaggtgtaggaataa
ttcaagcctattagaataacagtttaatattgcaactgcaagattataga
ttccttggtctaatttgtcaggatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12354504_12355648
seq2: B6Ng01-251D16.b_52_1210 (reverse)

seq1  GTTTCACTCAAAT----------ATTACCTATTGATAATTATTTCTAG-T  39
      |||||||  ||||          |||||||| |||||| ||||||||| |
seq2  GTTTCACCAAAATGTCAGTCAAAATTACCTAATGATAAGTATTTCTAGAT  50

seq1  ACATAAAATGTTTTTCAGTTTCCATTCTTTAATAC-AGGTAGAACATAGA  88
      ||||||||   ||||||  || || ||||| |||| ||||||||||||||
seq2  ACATAAAAATGTTTTCAAGTTGCA-TCTTT-ATACAAGGTAGAACATAGA  98

seq1  TA-TTTCTTATA-CTTATGTG--CAGGTAAC-TTTTTTTTTGATCAG-AT  132
      || ||||||||| || |||||   ||||||| ||||||||||||||| ||
seq2  TATTTTCTTATACCTAATGTGGCAAGGTAACTTTTTTTTTTGATCAGAAT  148

seq1  GT-ATTGCCATCTTGG-AAGTTTACTGATGAATAAGCTCACCCTTTCTTT  180
      || ||||||||||||| ||||| |||||||||||||||||||    ||| 
seq2  GTAATTGCCATCTTGGAAAGTTAACTGATGAATAAGCTCACC----CTTC  194

seq1  TTTTTTTTTTTTCAGCTTTTTAACAATTTTATTAAG-AAAGCTGTAAACA  229
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TTTTTTTTTTTTCAGC-TTTTAACAATTTTATTAAGAAAAGCTGTAAACA  243

seq1  AACAAACAAACACAAACCAGATGGCTGCGAAGACACAACTGCCTTTGTGT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACACAAACCAGATGGCTGCGAAGACACAACTGCCTTTGTGT  293

seq1  GCCTATGCTGTAACAGCAGGAGCTGACAGAAAATTCCCTAATTGTAAGTC  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGCTGTAACAGCAGGAGCTGACAGAAAATTCCCTAATTGTAAGTC  343

seq1  TTAACAGGCATCTGGGCTCCAAACAGTTCTGGGTGGCTTTCTCACTTCTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGCATCTGGGCTCCAAACAGTTCTGGGTGGCTTTCTCACTTCTT  393

seq1  CTGGCGAAAAGCTCTTTGAAGCCATGCCCAGCAGCCTAGGTGCCTGGCAC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGAAAAGCTCTTTGAAGCCATGCCCAGCAGCCTAGGTGCCTGGCAC  443

seq1  TGTAAGAAGCAGGATCCTTGTCAGGGCAGTCTCCACCATCACAGGTCTCA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGCAGGATCCTTGTCAGGGCAGTCTCCACCATCACAGGTCTCA  493

seq1  ACTTCCAGCCTTTCTCCCTGAGCAAGCTTGGTGAGGGTTGGTCTAGCTCC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGCCTTTCTCCCTGAGCAAGCTTGGTGAGGGTTGGTCTAGCTCC  543

seq1  TCTGTATCTTTGTCTTTGTCATTTTCCACATCTCCTGGGGACACTTGTGA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCTTTGTCTTTGTCATTTTCCACATCTCCTGGGGACACTTGTGA  593

seq1  TTTCCTCTGACACTCACTCTGGAAGACTTCTGTGCTCTTCTTCATGGCAC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGACACTCACTCTGGAAGACTTCTGTGCTCTTCTTCATGGCAC  643

seq1  AATTAAATTTGTGGTAGAAATCCAGGTAGTTCACACTCTCAAACACACAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTTGTGGTAGAAATCCAGGTAGTTCACACTCTCAAACACACAA  693

seq1  ATTTCCCATTCTAAAACCCAGCCATCCTCAGAGCAGTGGCTTTGCTCTTT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATTCTAAAACCCAGCCATCCTCAGAGCAGTGGCTTTGCTCTTT  743

seq1  GCTTAAACAAAGTGTCTCAGACTTGGAACACCTTGTATTCTGGGCTGGCA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACAAAGTGTCTCAGACTTGGAACACCTTGTATTCTGGGCTGGCA  793

seq1  AGACAAGTGGACTCTGCAGTGCATTTTCTTCAATATCTGATGTATCCTTG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTGGACTCTGCAGTGCATTTTCTTCAATATCTGATGTATCCTTG  843

seq1  ACAAAACCAGGGAAGGACTGCATCATCTTCTTACCTTTTTCCATGGATCA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAGGGAAGGACTGCATCATCTTCTTACCTTTTTCCATGGATCA  893

seq1  CTGAGGTTAAGTCCTCGACCTTCTGATTCAGAGAAGAATCCAGTTAATTA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTAAGTCCTCGACCTTCTGATTCAGAGAAGAATCCAGTTAATTA  943

seq1  ATTGTACTCTATACTCCTTGACCCCACCCAACCATGACACTGTAGGAAGC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTCTATACTCCTTGACCCCACCCAACCATGACACTGTAGGAAGC  993

seq1  TGCATTTTAAACCCACAATCCTAGCACCTATTTGCATTGCCTAAAGAGGC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTAAACCCACAATCCTAGCACCTATTTGCATTGCCTAAAGAGGC  1043

seq1  AAGATTCTGCCCAATCTGATCCCAAAAATCCTGGAAGGGGATTTATTAGA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGCCCAATCTGATCCCAAAAATCCTGGAAGGGGATTTATTAGA  1093

seq1  ATTACTTACAGAGTGTAGTTGAGCTTATTCCACAACAGCTGGATGGGAAG  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTACAGAGTGTAGTTGAGCTTATTCCACAACAGCTGGATGGGAAG  1143

seq1  CAAAGTCCAAGAATTC  1145
      ||||||||||||||||
seq2  CAAAGTCCAAGAATTC  1159

seq1: chr5_12191367_12192538
seq2: B6Ng01-251D16.g_66_1243

seq1  GAATTCACCATTTCGGCCCTAACTAGGTACTTTTTCTGAACAAATTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTCGGCCCTAACTAGGTACTTTTTCTGAACAAATTATCT  50

seq1  TTAGAAAAAAAAATATCATATTATAAAAAAAATATTGCCTTTGGTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAAAAAATATCATATTATAAAAAAAATATTGCCTTTGGTCTTCA  100

seq1  AGGCAAGGAAATAATGAGCTAATCTCAGCTTACATGTATTCAAACTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGAAATAATGAGCTAATCTCAGCTTACATGTATTCAAACTGGGG  150

seq1  AAAACCAAATGTTAGTGAGCTGTCTGAGTGGATATATAACAGAACTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAATGTTAGTGAGCTGTCTGAGTGGATATATAACAGAACTCTGG  200

seq1  TCATAAGTCCTTTCTTAAAGCAACACCTTTTCCTTGGACCATTGAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTCCTTTCTTAAAGCAACACCTTTTCCTTGGACCATTGAACATT  250

seq1  TCCCTAAGCCTAGGAAATTTGCACATTATGAAGAAAATTATTTATTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGCCTAGGAAATTTGCACATTATGAAGAAAATTATTTATTTAGC  300

seq1  TAGAAAGGTTAATATGGCTTTAAAGAAAAATAATGGATTCAGAATTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGTTAATATGGCTTTAAAGAAAAATAATGGATTCAGAATTTGAA  350

seq1  TGTGTTTTTGTCTATAAAAGTCTTAAATCCTTTATAAGCCCTGAGTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTGTCTATAAAAGTCTTAAATCCTTTATAAGCCCTGAGTTGTT  400

seq1  AGTTTGTGGTTAAATAAAACATAATTATCTGATAAATCTTTGTACTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGTTAAATAAAACATAATTATCTGATAAATCTTTGTACTGTGG  450

seq1  TCTGATTTTTCCTGTAGCAAATCCAACAACCTGAGACTAACTAGCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTTTCCTGTAGCAAATCCAACAACCTGAGACTAACTAGCACATT  500

seq1  TTCTGGCTTTTGCCCATGAGGAGAAATTGAAAGAAATTGAGCCAGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTTTTGCCCATGAGGAGAAATTGAAAGAAATTGAGCCAGCTTTT  550

seq1  CTGTCCTCGGGCAGATTTTTCTAAAAGCTGTTTCAGTTTGCTAGATAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCGGGCAGATTTTTCTAAAAGCTGTTTCAGTTTGCTAGATAAGG  600

seq1  AAAAAGTTAAAGCTCTTTTGGCATTTTTACAGATTTAAAGTCACTAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTAAAGCTCTTTTGGCATTTTTACAGATTTAAAGTCACTAGACA  650

seq1  AGATGAAGATTTTTTTTTTGAGAAGGAACACACTGTATTGTTTTTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGATTTTTTTTTTGAGAAGGAACACACTGTATTGTTTTTCTGTT  700

seq1  TTCATATCTATTTTAATCTTGCATCCATCAATCTGTTAATAGGCCAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCTATTTTAATCTTGCATCCATCAATCTGTTAATAGGCCAATTG  750

seq1  CTGGTGTCTAGTTTCAAAGCCAATGACGTACAAACACTGCAGATGGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCTAGTTTCAAAGCCAATGACGTACAAACACTGCAGATGGTTGG  800

seq1  TCCTGAAGTTGGAATGGTAACCCACCAATACCAAGCCTGTAACTTCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGTTGGAATGGTAACCCACCAATACCAAGCCTGTAACTTCATCT  850

seq1  TACTAAGTGGTATGTTATTTCCAAGCCATAATACTAACAAAAGGCTAGAG  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACTAAGTGGTATGTTATTTCCAAGCCATAATACTAAC-AAAGGCTAGAG  899

seq1  AAAGACAAGGTACAATGAAAATCACCATCCTCAATCTCAAAGATGGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGGTACAATGAAAATCACCATCCTCAATCTCAAAGATGGAAAT  949

seq1  AGAAACAAAATTGACAAGAGGAAAGATCACAGTGCAGAATCCTCTGCCAG  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAC-AAATTGACAAGAGGAAAGATCACAGTGCAGAATCCTCTGCCAG  998

seq1  CTTT-GTGAGAGTATGGAA-GATGGAGAATCTGAAAATACAAACTTCACT  1048
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTGGTGAGAGTATGGAAGGATGGAGAATCTGAAAATACAAACTTCACT  1048

seq1  -GTGAAGAGCTTGG--TC-GTGGTCAATTCTCCAATTCTACAGGTGTAGG  1094
       ||| |||||||||  || |||||||  ||| || |||||||||||||||
seq2  GGTGGAGAGCTTGGGTTCGGTGGTCA--TCT-CATTTCTACAGGTGTAGG  1095

seq1  AATAATTC-AGGCTA-TAGATAAACAGTTT-ATATTGCCAACTGAAAGAT  1141
      |||||||| || ||| ||||  |||||||| |||||| |||||| |||||
seq2  AATAATTCAAGCCTATTAGAATAACAGTTTAATATTG-CAACTGCAAGAT  1144

seq1  TATAAATATCCTT-GTCT-ATTTGTCAG--TCAAA  1172
      |||| || ||||| |||| |||||||||  |||||
seq2  TATAGAT-TCCTTGGTCTAATTTGTCAGGATCAAA  1178