BAC Information

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BAC

Clone NameB6Ng01-252C08
Chromosome5 (Build37)
Map Location 72,348,490 - 72,349,614
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252C08.bB6Ng01-252C08.g
ACCGA059223GA059224
length1,1111,155
definitionB6Ng01-252C08.b B6Ng01-252C08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaatttagagtcactcagaaatagaaaaggagatacattatgt
aagatagacatgactgaaactggtggtttttctggtaccttggtacatat
tttagagactctggacatcaggaagggattatagaagagaatctttagaa
aactgtatggagttgagtgtgcctgcttaccaaaagagcccacagggtag
caatcaggagcatggactttgaaacttgacaagaatctccagtataccat
agaatggcaatttatccattcaaatcaagatcaaataactctccaaatct
tagtccatcttctgcccaatatttgctacctcatgtctgtactagattgt
gaggacaggctcttctcctgtgaccacttctgtttacacaatataaaggc
tgataaatgttctggaagaacatctcagtcaatgtttggcatggctgtgt
gtggacacagtgctttctccttaaaaccccttctcatatctacatattac
tttagttaataggaaaaagagtttttgaaattcacgtgtagaaacacaac
acttatcacattaaacttagcatgttctagacaccatgctttgtgcttta
tctatagatgttataaccagataatcctcacatcttccgtgagaagtaga
aacattccttgtctccattttacacaccagcaaggtcctccgcaaagaga
taaatcccttgcccaatgtcttacctttgggaattcggtggtgattgaaa
ataagactgtcacttccattaatgatctcttggatgaaaacactttttaa
tataataagacagtagagaaggaaccatggtgggacacacatttaatccc
agcacttgggaggcagaataaaggtgaatctctacgtttaagagcagtct
ggtttacaaagtgaacttcagaaagccaggttacccagaaaaaccctgtc
ttcaagggggaaatagatactggagagagactgcgtaatttttattcagt
agacatggggattgatgaaaagcaagattatactgtttacctttacagag
acacttatgtgaatacagtagttgtagttaaacagaaagaaatcgagtat
ggtaaaaaaaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacataaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaca
tagaagtggatgctcacagtcggctattggatggatcacatggcccccaa
tgaaggagctagagaaagtaccaagaagctaagggatctgcaccctatag
tggacaccatatgaactaccagtaccccggagctcttgactctagctgca
atgcatcaaagatgcctagtccgcatcacttgaaaagaggccattggacc
tctaactttatatgcccattacaaggtacgccaggcataaaggggaattg
ctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72348490_72349614
seq2: B6Ng01-252C08.b_44_1154

seq1  GAATTCTAAATTTAGAGTCACTCAGAAATAGAAAAGGAGATACATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATTTAGAGTCACTCAGAAATAGAAAAGGAGATACATTATGT  50

seq1  AAGATAGACATGACTGAAACTGGTGGTTTTTCTGGTACCTTGGTACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGACATGACTGAAACTGGTGGTTTTTCTGGTACCTTGGTACATAT  100

seq1  TTTAGAGACTCTGGACATCAGGAAGGGATTATAGAAGAGAATCTTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGACTCTGGACATCAGGAAGGGATTATAGAAGAGAATCTTTAGAA  150

seq1  AACTGTATGGAGTTGAGTGTGCCTGCTTACCAAAAGAGCCCACAGGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATGGAGTTGAGTGTGCCTGCTTACCAAAAGAGCCCACAGGGTAG  200

seq1  CAATCAGGAGCATGGACTTTGAAACTTGACAAGAATCTCCAGTATACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGAGCATGGACTTTGAAACTTGACAAGAATCTCCAGTATACCAT  250

seq1  AGAATGGCAATTTATCCATTCAAATCAAGATCAAATAACTCTCCAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCAATTTATCCATTCAAATCAAGATCAAATAACTCTCCAAATCT  300

seq1  TAGTCCATCTTCTGCCCAATATTTGCTACCTCATGTCTGTACTAGATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATCTTCTGCCCAATATTTGCTACCTCATGTCTGTACTAGATTGT  350

seq1  GAGGACAGGCTCTTCTCCTGTGACCACTTCTGTTTACACAATATAAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGGCTCTTCTCCTGTGACCACTTCTGTTTACACAATATAAAGGC  400

seq1  TGATAAATGTTCTGGAAGAACATCTCAGTCAATGTTTGGCATGGCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGTTCTGGAAGAACATCTCAGTCAATGTTTGGCATGGCTGTGT  450

seq1  GTGGACACAGTGCTTTCTCCTTAAAACCCCTTCTCATATCTACATATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACAGTGCTTTCTCCTTAAAACCCCTTCTCATATCTACATATTAC  500

seq1  TTTAGTTAATAGGAAAAAGAGTTTTTGAAATTCACGTGTAGAAACACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAATAGGAAAAAGAGTTTTTGAAATTCACGTGTAGAAACACAAC  550

seq1  ACTTATCACATTAAACTTAGCATGTTCTAGACACCATGCTTTGTGCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCACATTAAACTTAGCATGTTCTAGACACCATGCTTTGTGCTTTA  600

seq1  TCTATAGATGTTATAACCAGATAATCCTCACATCTTCCGTGAGAAGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGATGTTATAACCAGATAATCCTCACATCTTCCGTGAGAAGTAGA  650

seq1  AACATTCCTTGTCTCCATTTTACACACCAGCAAGGTCCTCCGCAAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCTTGTCTCCATTTTACACACCAGCAAGGTCCTCCGCAAAGAGA  700

seq1  TAAATCCCTTGCCCAATGTCTTACCTTTGGGAATTCGGTGGTGATTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCCTTGCCCAATGTCTTACCTTTGGGAATTCGGTGGTGATTGAAA  750

seq1  ATAAGACTGTCACTTCCATTAATGATCTCTTGGATGAAAACACTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTGTCACTTCCATTAATGATCTCTTGGATGAAAACACTTTTTAA  800

seq1  TATAATAAGACAGTAGAGAAGGAACCATGGTGGGACACACATTTAATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAGACAGTAGAGAAGGAACCATGGTGGGACACACATTTAATCCC  850

seq1  AGCACTTGGGAGGCAGAAT-AAGGTGAATCTCTACGTTTAAGAGCAGTCT  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAATAAAGGTGAATCTCTACGTTTAAGAGCAGTCT  900

seq1  GGTTTACAAAGTGAACTTCAGGAAAGCCAGGGTTACCCAGAAAAACCCTG  949
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  GGTTTACAAAGTGAACTTCA-GAAAGCCA-GGTTACCCAGAAAAACCCTG  948

seq1  TCTTCAAGGGGGAAATAAGATACTGGAGAGAGACTGCGTAATTTTTATTC  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTCAAGGGGGAAAT-AGATACTGGAGAGAGACTGCGTAATTTTTATTC  997

seq1  AAGTAGACATGGGGAATTGAATGAAAAAGCAAAGATTAATACCTGTTTAC  1049
       ||||||||||||| |||| ||| |||||| |||||| ||| ||||||||
seq2  -AGTAGACATGGGG-ATTG-ATG-AAAAGC-AAGATT-ATA-CTGTTTAC  1040

seq1  CTTTACAGAGACACTTAATGTGAATACAGTAGTTGTAGGTAAAACAGAAA  1099
      |||||||||||||||| |||||||||||||||||||| || |||||||||
seq2  CTTTACAGAGACACTT-ATGTGAATACAGTAGTTGTA-GTTAAACAGAAA  1088

seq1  GAAATCGAGTTATTGGTTAAAAAAAA  1125
      ||||||||||   |||| ||||||| 
seq2  GAAATCGAGT--ATGGTAAAAAAAA-  1111