BAC Information

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BAC

Clone NameB6Ng01-252I13
Chromosome5 (Build37)
Map Location 14,428,796 - 14,578,040
singlet/doubletdoublet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252I13.bB6Ng01-252I13.g
ACCGA059500GA059501
length1,0091,159
definitionB6Ng01-252I13.b B6Ng01-252I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,428,796 - 14,429,381)(14,576,878 - 14,578,040)
sequence
gaattccttagttaccagatacccttgttttagaaactgtgctcaccctg
tcttttccatgtggaaggggctggaattcttcttttccttttattgaaaa
cagttatttttctcacataatatatcctggttaaagtttcccctttctgt
actcccagttcttccacacctcccctcccatccagatccacccctttctg
cctctcattagaacacaaactggcttcaaatggatactaacgaaaagtaa
aataaattactataaaacaaagctaacacatggggataaggcaaagcgac
agaaaaaaaagtccaagaaactgatatagacagaatacctctttatttac
acactcagggatcccataaaattacttaatggggacccatattatatgtg
cacaggatctgtagagtataaagagagagaaaatgaaatatataagtaag
attaaaaattttaaaaatgagatcgaattaaaaaataaaagaagaaaaag
cccaatacaaaattacaaaagggggaccctccaaaatgcggttgaattta
ttttttgttggccatctactgctgggtattaggcctgctcctaagactag
tttgtttttcaagtaacacttcatcagaggaatctattttttatcagcaa
gtggttgtcaattggatattgcttcagagttagtgatggggacatgtgtc
cacctcgtttgacttgaggaccccatctgtggcaaccatgcaggctctgt
gcatgcttcctctatgagattgtatgtacatcgttcctgttgacttagag
ggcctggttttcttgctgttctctatcatctcagccttggatactttttc
tgcttcttctgcaaggctctccaagccctgagggaagggatttgatggag
acatcccttttagactgagtatttcaaggtttctcatttgctgcatattg
tcagatgtgtgcctctgcatttgttcccacacactgtagatggaagcatc
tcatgatgg
gaattccgcaggtgttcctaattgtctgggctgcaattaggttgattatg
tgattactaagtttggggaggtgaggtctggtttggaagcagtgttttct
gataggtaaaaacacaagtctgtgtgctttgaatccaaccagaataagag
ttattaaagttgaaattctaaagttaaaaaaaaaaaaaaaaacacttttc
ctagctgaatagatggaacttgcctaccttgtacaaggctctggactgga
tttggacctctagaattgaagaaaaaaatgtactcatcaaaaattcagat
gccaactgaaatgtgctagtatgtacagaactcatgaagatgatacgggt
atgcattttaaaaccttaatcattgttatgtatatgtagagagcaacaga
tgatagattagacagataaatagaagatagatatatagatagattagata
gatagaagatagatagatagatagatagatagagaaagagagacagacag
atagatagacagcatagatgattgacagacagaaagacacagatacaaaa
gacacagatatattcttttggaaaattaaaatgaaaacaaaagcaaatga
gccttcaatatttcccgatgaagcaattgaggcctgtggtagctaagtat
cacaccattgttacacagctattaaaactttgtgggtttcaaaaatcagg
cagttttccattacagcctacactcttatctgactcctttgaatcgcctc
gttgtcacgtgtccctattttcttctttgcagcatgtctgtgttaggaca
tagagcagggaggactgattttcttcccttttgagtttctccttcatcct
ggtcactatttccttcctggaatcatctagaagggtggataacagacttc
tctgtctgggttaattttagtagactgaaaacattcttccagcttgctcc
ttaatggtggatccttctccacttctaaccaacagcattgcacaggtcag
tacattctgctgcctgacaaatactctcaaggttttcatttctaagttcc
tctcattgatgcctgcctcacgcagagacaatatactgatgctacttctt
tcctaagcctcttatatcacatattcttctctagcaacgtcatgatggct
tacaagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14428796_14429381
seq2: B6Ng01-252I13.b_48_633

seq1  GAATTCCTTAGTTACCAGATACCCTTGTTTTAGAAACTGTGCTCACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTTACCAGATACCCTTGTTTTAGAAACTGTGCTCACCCTG  50

seq1  TCTTTTCCATGTGGAAGGGGCTGGAATTCTTCTTTTCCTTTTATTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCATGTGGAAGGGGCTGGAATTCTTCTTTTCCTTTTATTGAAAA  100

seq1  CAGTTATTTTTCTCACATAATATATCCTGGTTAAAGTTTCCCCTTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTTTTCTCACATAATATATCCTGGTTAAAGTTTCCCCTTTCTGT  150

seq1  ACTCCCAGTTCTTCCACACCTCCCCTCCCATCCAGATCCACCCCTTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGTTCTTCCACACCTCCCCTCCCATCCAGATCCACCCCTTTCTG  200

seq1  CCTCTCATTAGAACACAAACTGGCTTCAAATGGATACTAACGAAAAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATTAGAACACAAACTGGCTTCAAATGGATACTAACGAAAAGTAA  250

seq1  AATAAATTACTATAAAACAAAGCTAACACATGGGGATAAGGCAAAGCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTACTATAAAACAAAGCTAACACATGGGGATAAGGCAAAGCGAC  300

seq1  AGAAAAAAAAGTCCAAGAAACTGATATAGACAGAATACCTCTTTATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAGTCCAAGAAACTGATATAGACAGAATACCTCTTTATTTAC  350

seq1  ACACTCAGGGATCCCATAAAATTACTTAATGGGGACCCATATTATATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGGATCCCATAAAATTACTTAATGGGGACCCATATTATATGTG  400

seq1  CACAGGATCTGTAGAGTATAAAGAGAGAGAAAATGAAATATATAAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATCTGTAGAGTATAAAGAGAGAGAAAATGAAATATATAAGTAAG  450

seq1  ATTAAAAATTTTAAAAATGAGATCGAATTAAAAAATAAAAGAAGAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTTTAAAAATGAGATCGAATTAAAAAATAAAAGAAGAAAAAG  500

seq1  CCCAATACAAAATTACAAAAGGGGGACCCTCCAAAATGCGGTTGAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACAAAATTACAAAAGGGGGACCCTCCAAAATGCGGTTGAATTTA  550

seq1  TTTTTTGTTGGCCATCTACTGCTGGGTATTAGGCCT  586
      ||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGGCCATCTACTGCTGGGTATTAGGCCT  586

seq1: chr5_14576878_14578040
seq2: B6Ng01-252I13.g_66_1224 (reverse)

seq1  TATCTTGTCAG-CATCATGGAACGTTGCTGAGAAGAGAATATGGTGATAT  49
      |||||||| || |||||||  |||||||| |||  ||||||| |||||||
seq2  TATCTTGTAAGCCATCATG--ACGTTGCT-AGAGAAGAATAT-GTGATAT  46

seq1  AAGAGGCCCTGAGAAAGAAAGGTAGCATCAGTATATTGTCTCTGCGTGAG  99
      |||||| | |  |||||||  |||||||||||||||||||||||||||||
seq2  AAGAGG-CTTAGGAAAGAA--GTAGCATCAGTATATTGTCTCTGCGTGAG  93

seq1  GCA-GCATCAATGAAGAAGAAACTTAGAAATGAAAACC-TGAGAGGTATT  147
      ||| ||||||||||   || |||||||||||||||||| ||||| |||||
seq2  GCAGGCATCAATGA--GAGGAACTTAGAAATGAAAACCTTGAGA-GTATT  140

seq1  TGTCAGGCAGCAGAATGTACTGACCTGTGCAATGCTG-TGGTTAGAAGTG  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTCAGGCAGCAGAATGTACTGACCTGTGCAATGCTGTTGGTTAGAAGTG  190

seq1  GAGAAGGATCCA-CAATAAGGAGCAAGCTGGAAGAATGTTTTCAGTCTAC  245
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  GAGAAGGATCCACCATTAAGGAGCAAGCTGGAAGAATGTTTTCAGTCTAC  240

seq1  TAAAATTAACCCAGACAGAGAAGTCTGTTAT-CACCCTTCTAGATGATTC  294
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAAATTAACCCAGACAGAGAAGTCTGTTATCCACCCTTCTAGATGATTC  290

seq1  CAGGAAGGAAATAGTGACCAGGATGAAGGAGAAACTCAAAAGGGAAGAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGAAATAGTGACCAGGATGAAGGAGAAACTCAAAAGGGAAGAAA  340

seq1  ATCAGTCCTCCCTGCTCTATGTCCTAACACAGACATGCTGCAAAGAAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCTCCCTGCTCTATGTCCTAACACAGACATGCTGCAAAGAAGAA  390

seq1  AATAGGGACACGTGACAACGAGGCGATTCAAAGGAGTCAGATAAGAGTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGACACGTGACAACGAGGCGATTCAAAGGAGTCAGATAAGAGTGT  440

seq1  AGGCTGTAATGGAAAACTGCCTGATTTTTGAAACCCACAAAGTTTTAATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTAATGGAAAACTGCCTGATTTTTGAAACCCACAAAGTTTTAATA  490

seq1  GCTGTGTAACAATGGTGTGATACTTAGCTACCACAGGCCTCAATTGCTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAACAATGGTGTGATACTTAGCTACCACAGGCCTCAATTGCTTC  540

seq1  ATCGGGAAATATTGAAGGCTCATTTGCTTTTGTTTTCATTTTAATTTTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGAAATATTGAAGGCTCATTTGCTTTTGTTTTCATTTTAATTTTCC  590

seq1  AAAAGAATATATCTGTGTCTTTTGTATCTGTGTCTTTCTGTCTGTCAATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATATATCTGTGTCTTTTGTATCTGTGTCTTTCTGTCTGTCAATC  640

seq1  ATCTATGCTGTCTATCTATCTGTCTGTCTCTCTTTCTCTATCTATCTATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGCTGTCTATCTATCTGTCTGTCTCTCTTTCTCTATCTATCTATC  690

seq1  TATCTATCTATCTTCTATCTATCTAATCTATCTATATATCTATCTTCTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTTCTATCTATCTAATCTATCTATATATCTATCTTCTAT  740

seq1  TTATCTGTCTAATCTATCATCTGTTGCTCTCTACATATACATAACAATGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTCTAATCTATCATCTGTTGCTCTCTACATATACATAACAATGA  790

seq1  TTAAGGTTTTAAAATGCATACCCGTATCATCTTCATGAGTTCTGTACATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTTTAAAATGCATACCCGTATCATCTTCATGAGTTCTGTACATA  840

seq1  CTAGCACATTTCAGTTGGCATCTGAATTTTTGATGAGTACATTTTTTTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACATTTCAGTTGGCATCTGAATTTTTGATGAGTACATTTTTTTCT  890

seq1  TCAATTCTAGAGGTCCAAATCCAGTCCAGAGCCTTGTACAAGGTAGGCAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTAGAGGTCCAAATCCAGTCCAGAGCCTTGTACAAGGTAGGCAA  940

seq1  GTTCCATCTATTCAGCTAGGAAAAGTGTTTTTTTTTTTTTTTTTAACTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTATTCAGCTAGGAAAAGTGTTTTTTTTTTTTTTTTTAACTTT  990

seq1  AGAATTTCAACTTTAATAACTCTTATTCTGGTTGGATTCAAAGCACACAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCAACTTTAATAACTCTTATTCTGGTTGGATTCAAAGCACACAG  1040

seq1  ACTTGTGTTTTTACCTATCAGAAAACACTGCTTCCAAACCAGACCTCACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTTTTTACCTATCAGAAAACACTGCTTCCAAACCAGACCTCACC  1090

seq1  TCCCCAAACTTAGTAATCACATAATCAACCTAATTGCAGCCCAGACAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAACTTAGTAATCACATAATCAACCTAATTGCAGCCCAGACAATT  1140

seq1  AGGAACACCTGCGGAATTC  1163
      |||||||||||||||||||
seq2  AGGAACACCTGCGGAATTC  1159