BAC Information

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BAC

Clone NameB6Ng01-252N10
Chromosome5 (Build37)
Map Location 61,205,551 - 61,363,609
singlet/doubletdoublet
Overlap geneLOC666597
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252N10.bB6Ng01-252N10.g
ACCGA059726GA059727
length1,1431,182
definitionB6Ng01-252N10.b B6Ng01-252N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,362,465 - 61,363,609)(61,205,551 - 61,207,048)
sequence
gaattctaagaaatgaaatgaaagaagtagtaaaatgccccattttgctg
ttgagccttacaaggacaactcaggcatatataattatatcatgagtttt
tctataatattcatgctatataagaaaatcccctttagatttctgagtca
cagtcaatttgatatataaatagtttaatttccttaactattatacaaat
tgctagacagagaaatttaagaataacttaagggcctaaagttcatggat
agtagtagggtcataataaaaggagattacttagtgaaaaatattgacag
taagttattaacaatgtatttaaatgttcataacatatgattataaataa
tccaggtgtatttaaaatattttcattaaaaattgatgaaactagaaatg
gttcactcagttttactcagtacatagtcgtttaataagatgttgccatc
cagctggttacggtttggtaattgtctacgaccatttcctgggctggaaa
gcagtaattatactaatgcctgacaatcagctcattcctagctattaact
agctattaagtgtagaatgaaattattatgattaaagactcttcttgatc
caaacaaagttatgctggagaagctactgagaacgttgaaagagtgactc
ttgcttcagttagcaacctcaagttagcaacctgaaagaaaacctagctg
atgagtgtagaagcagaaaaggggttgccagaaaattaagtagagccaat
aaatcaaaataaaatgcctgatttgattatgggaatgtatatttgtgcat
atattagacctgagggactataagtcaaggtcacatcaaagaatgaagga
agtaacctttaggtaatatacagttttatcatgtatactggaaatgattt
tattatgaagaaaagaggactcatggcaagtctgtgaattggaaatggaa
tgggaaatgtagagattatcccttattaattgttttgcattttttattga
caagccttaatagcagagtatgtattcatatgattcttaaagtagtattg
gcaatccagatgtatggtggtagatggtatttaaagatatacaaaaccga
aattgcgagatctttgctaacagcactttaatgctattcatct

gaattctaatgatataaatgttttcttctttgtgggcttataatgtaaac
tataaacaagatggcttataagcaatgggaattcaattttcacagcagta
aaagtttaagaagcccaagattgagacatcagtaactcatctgtatttga
aagtctgatactcagttcataaagtgttctatgctgtcatgttgcagaag
agacaaataaaatccctttaaacttttgaaataagaatattaattctaat
gattatgaccctagacccttagaacttgattcctgatctttccttctaca
gccatcattataggctcacaggaattttagggaaattaatatgataggag
gtaattttttcattctgttattggaacattaaaatctattgtgtctatac
atttaatataggcatgcatttttatactgatatgaatgtcttaggatatt
aacacttggagtttgtgactatcacttggctttagtgatattagaaacat
gaattactggtttatgctcttcaagtttatgcaaattggtctataatttc
taattgcttatcaaattttcgatgtcagtatttgttctttgccatggtac
ctgatgatggtgagccttactttattgtaggggctataacttgaattata
atgggacatcaaatacaaatgatgtcagagaaaaattctttacctgctta
aaaaatgaatccgtactttgatatgtatttgaacaataattatagtagtg
cttattaccttctaagtaattgcctagtatggtgtgctttatttagcatc
actttacttctcttattaataaaaatagtgaggtgttcttgccaattcac
aaacataggtaatcaataaaggattgtaccgatggtctttgcaggctaga
tcactcatatttgaaaatgtatgtgtctacaaccgactgtagcctatgaa
gtcatctttcagtataacactggggttaccgtattgggttttcctgtcca
ctgaataaaagctatatttaatataacttgctgaaattattgtattcctt
atatattattattattattaaatatttttaatacgtatttcctcaattac
attgcatgctatccaaaagtccccaatactcccccactcggatcaccaat
tcgaatttttgcgccctggcggattcctagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61362465_61363609
seq2: B6Ng01-252N10.b_48_1190 (reverse)

seq1  AGATGAATATGCATTTAAGTGCTG-TAGCAAAGATCTCTGCAATTTCGGT  49
      ||||||||| ||||| |||||||| ||||||||||||| |||||||||||
seq2  AGATGAATA-GCATTAAAGTGCTGTTAGCAAAGATCTC-GCAATTTCGGT  48

seq1  TTTGTATATCTTTTAAATACCATCCTTACCACAATACATCTGGATTGCCA  99
      |||||||||| |||||||||||||  |||||| |||||||||||||||||
seq2  TTTGTATATC-TTTAAATACCATC--TACCACCATACATCTGGATTGCCA  95

seq1  ATACTACTTTTAAGAATCATTATGAATACATACTCTGCTATTAA-GCTTG  148
      ||||||| ||||||||||| |||||||||||||||||||||||| |||||
seq2  ATACTAC-TTTAAGAATCA-TATGAATACATACTCTGCTATTAAGGCTTG  143

seq1  TCAAT-AAAAATGCAAAACAATTAATAA-GGATAATCTCTACATTTCC--  194
      ||||| |||||||||||||||||||||| |||||||||||||||||||  
seq2  TCAATAAAAAATGCAAAACAATTAATAAGGGATAATCTCTACATTTCCCA  193

seq1  ATCCATTTCCAATTCACAGACTTGCCATGAGTCCTCTTTTCTTCATAATA  244
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCCAATTCACAGACTTGCCATGAGTCCTCTTTTCTTCATAATA  243

seq1  AAATCATTTCCAGTATACATGATAAAACTGTATATTACCTAAAGGTTACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATCATTTCCAGTATACATGATAAAACTGTATATTACCTAAAGGTTAC-  292

seq1  TTCCTTCATTCTTTGATGTGACCTTGACTTATAGTCCCTCAGGTCTAATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATTCTTTGATGTGACCTTGACTTATAGTCCCTCAGGTCTAATA  342

seq1  TATGCACAAATATACATTCCCATAATCAAATCAGGCATTTTATTTTGATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAAATATACATTCCCATAATCAAATCAGGCATTTTATTTTGATT  392

seq1  TATTGGCTCTACTTAATTTTCTGGCAACCCCTTTTCTGCTTCTACACTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTCTACTTAATTTTCTGGCAACCCCTTTTCTGCTTCTACACTCA  442

seq1  TCAGCTAGGTTTTCTTTCAGGTTGCTAACTTGAGGTTGCTAACTGAAGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGGTTTTCTTTCAGGTTGCTAACTTGAGGTTGCTAACTGAAGCA  492

seq1  AGAGTCACTCTTTCAACGTTCTCAGTAGCTTCTCCAGCATAACTTTGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTCTTTCAACGTTCTCAGTAGCTTCTCCAGCATAACTTTGTTT  542

seq1  GGATCAAGAAGAGTCTTTAATCATAATAATTTCATTCTACACTTAATAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGAAGAGTCTTTAATCATAATAATTTCATTCTACACTTAATAGC  592

seq1  TAGTTAATAGCTAGGAATGAGCTGATTGTCAGGCATTAGTATAATTACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATAGCTAGGAATGAGCTGATTGTCAGGCATTAGTATAATTACTG  642

seq1  CTTTCCAGCCCAGGAAATGGTCGTAGACAATTACCAAACCGTAACCAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGCCCAGGAAATGGTCGTAGACAATTACCAAACCGTAACCAGCT  692

seq1  GGATGGCAACATCTTATTAAACGACTATGTACTGAGTAAAACTGAGTGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCAACATCTTATTAAACGACTATGTACTGAGTAAAACTGAGTGAA  742

seq1  CCATTTCTAGTTTCATCAATTTTTAATGAAAATATTTTAAATACACCTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTAGTTTCATCAATTTTTAATGAAAATATTTTAAATACACCTGG  792

seq1  ATTATTTATAATCATATGTTATGAACATTTAAATACATTGTTAATAACTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATAATCATATGTTATGAACATTTAAATACATTGTTAATAACTT  842

seq1  ACTGTCAATATTTTTCACTAAGTAATCTCCTTTTATTATGACCCTACTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAATATTTTTCACTAAGTAATCTCCTTTTATTATGACCCTACTAC  892

seq1  TATCCATGAACTTTAGGCCCTTAAGTTATTCTTAAATTTCTCTGTCTAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGAACTTTAGGCCCTTAAGTTATTCTTAAATTTCTCTGTCTAGC  942

seq1  AATTTGTATAATAGTTAAGGAAATTAAACTATTTATATATCAAATTGACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATAATAGTTAAGGAAATTAAACTATTTATATATCAAATTGACT  992

seq1  GTGACTCAGAAATCTAAAGGGGATTTTCTTATATAGCATGAATATTATAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAGAAATCTAAAGGGGATTTTCTTATATAGCATGAATATTATAG  1042

seq1  AAAAACTCATGATATAATTATATATGCCTGAGTTGTCCTTGTAAGGCTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCATGATATAATTATATATGCCTGAGTTGTCCTTGTAAGGCTCA  1092

seq1  ACAGCAAAATGGGGCATTTTACTACTTCTTTCATTTCATTTCTTAGAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAATGGGGCATTTTACTACTTCTTTCATTTCATTTCTTAGAATT  1142

seq1  C  1145
      |
seq2  C  1143


seq1: chr5_61205551_61207048
seq2: B6Ng01-252N10.g_67_1248

seq1  GAATTCTAATGATATAAATGTTTTCTTCTTTGTGGGCTTATAATGTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGATATAAATGTTTTCTTCTTTGTGGGCTTATAATGTAAAC  50

seq1  TATAAACAAGATGGCTTATAAGCAATGGGAATTCAATTTTCACAGCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAGATGGCTTATAAGCAATGGGAATTCAATTTTCACAGCAGTA  100

seq1  AAAGTTTAAGAAGCCCAAGATTGAGACATCAGTAACTCATCTGTATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAAGAAGCCCAAGATTGAGACATCAGTAACTCATCTGTATTTGA  150

seq1  AAGTCTGATACTCAGTTCATAAAGTGTTCTATGCTGTCATGTTGCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGATACTCAGTTCATAAAGTGTTCTATGCTGTCATGTTGCAGAAG  200

seq1  AGACAAATAAAATCCCTTTAAACTTTTGAAATAAGAATATTAATTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATAAAATCCCTTTAAACTTTTGAAATAAGAATATTAATTCTAAT  250

seq1  GATTATGACCCTAGACCCTTAGAACTTGATTCCTGATCTTTCCTTCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGACCCTAGACCCTTAGAACTTGATTCCTGATCTTTCCTTCTACA  300

seq1  GCCATCATTATAGGCTCACAGGAATTTTAGGGAAATTAATATGATAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCATTATAGGCTCACAGGAATTTTAGGGAAATTAATATGATAGGAG  350

seq1  GTAATTTTTTCATTCTGTTATTGGAACATTAAAATCTATTGTGTCTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTTCATTCTGTTATTGGAACATTAAAATCTATTGTGTCTATAC  400

seq1  ATTTAATATAGGCATGCATTTTTATACTGATATGAATGTCTTAGGATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATAGGCATGCATTTTTATACTGATATGAATGTCTTAGGATATT  450

seq1  AACACTTGGAGTTTGTGACTATCACTTGGCTTTAGTGATATTAGAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGGAGTTTGTGACTATCACTTGGCTTTAGTGATATTAGAAACAT  500

seq1  GAATTACTGGTTTATGCTCTTCAAGTTTATGCAAATTGGTCTATAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTGGTTTATGCTCTTCAAGTTTATGCAAATTGGTCTATAATTTC  550

seq1  TAATTGCTTATCAAATTTTCGATGTCAGTATTTGTTCTTTGCCATGGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTTATCAAATTTTCGATGTCAGTATTTGTTCTTTGCCATGGTAC  600

seq1  CTGATGATGGTGAGCCTTACTTTATTGTAGGGGCTATAACTTGAATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATGGTGAGCCTTACTTTATTGTAGGGGCTATAACTTGAATTATA  650

seq1  ATGGGACATCAAATACAAATGATGTCAGAGAAAAATTCTTTACCTGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACATCAAATACAAATGATGTCAGAGAAAAATTCTTTACCTGCTTA  700

seq1  AAAAATGAATCCGTACTTTGATATGTATTTGAACAATAATTATAGTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATCCGTACTTTGATATGTATTTGAACAATAATTATAGTAGTG  750

seq1  CTTATTACCTTCTAAGTAATTGCCTAGTATGGTGTGCTTTATTTAGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACCTTCTAAGTAATTGCCTAGTATGGTGTGCTTTATTTAGCATC  800

seq1  ACTTTACTTCTCTTATTAATAAAAATAGTGAGGTGTTCTTGCCAATTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTTCTCTTATTAATAAAAATAGTGAGGTGTTCTTGCCAATTCAC  850

seq1  AAACATAGGTAATCAAT-AAGGATTGTACCGATGGTCTTTGCAGGGCTAG  899
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  AAACATAGGTAATCAATAAAGGATTGTACCGATGGTCTTTGCA-GGCTAG  899

seq1  ATCACTCATATTTGAAAATGTATGTGTCTACAACCGACTGTAGCCTATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATATTTGAAAATGTATGTGTCTACAACCGACTGTAGCCTATGA  949

seq1  AGTCATCTTTCAGTAT-ACACTGGG--TACCGTATT-GGTTTTCCTGTCC  995
      |||||||||||||||| ||||||||  ||||||||| |||||||||||||
seq2  AGTCATCTTTCAGTATAACACTGGGGTTACCGTATTGGGTTTTCCTGTCC  999

seq1  ACTGAATAAAAAGCTATATTTAATATAACTTGCTGAAATTATTTGTAATT  1045
      ||||||| ||||||||||||||||||||||||||||||||| |||||  |
seq2  ACTGAAT-AAAAGCTATATTTAATATAACTTGCTGAAATTA-TTGTA--T  1045

seq1  TCTTTATTATTATTATTATTATTATTAAATATTTTTATTACGTATTTTCC  1095
      || ||||   ||||||||||||||||||||||||||| |||||| |||||
seq2  TCCTTAT--ATATTATTATTATTATTAAATATTTTTAATACGTA-TTTCC  1092

seq1  TCAATTACATTTCCAATGCTATCCCAAAAGGCCCCCATACCTTCCCCCCC  1145
      ||||||||||| |  ||||||| ||||||| |||| |||    | |||||
seq2  TCAATTACATTGC--ATGCTAT-CCAAAAGTCCCCAATA----CTCCCCC  1135

seq1  ACTCCCTATCCACCCATTCCGATTTTTTGGCCCTGGCG--TTCCCCTGTA  1193
      ||| |  || |||| ||||  ||||||  |||||||||  ||||    ||
seq2  ACT-CGGAT-CACCAATTCGAATTTTTGCGCCCTGGCGGATTCC----TA  1179

seq1  CTGGAGCATATAAAGTTTGCCTGTCCAATGGGCCTTTCTATCCAGTGATG  1243
       ||                                               
seq2  GTG-----------------------------------------------  1182

seq1  GCCCACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCG  1293
                                                        
seq2  --------------------------------------------------  1182

seq1  GGGTACTGGTTAGTTCATAATGTTGTTGCACCTACAAGGTTGCAGATCTC  1343
                                                        
seq2  --------------------------------------------------  1182

seq1  TTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGAT  1393
                                                        
seq2  --------------------------------------------------  1182

seq1  CCATCCAATAGCTGACTGAGCATCCACTTCTGTGTTTTCTAGGCCCCGGC  1443
                                                        
seq2  --------------------------------------------------  1182

seq1  CTAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAATGCTTCC  1493
                                                        
seq2  --------------------------------------------------  1182

seq1  TAGTG  1498
           
seq2  -----  1182


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