BAC Information

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BAC

Clone NameB6Ng01-253H23
Chromosome5 (Build37)
Map Location 76,791,866 - 76,986,339
singlet/doubletdoublet
Overlap geneNmu, LOC665065, EG639545, Exoc1
Upstream geneLOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3
Downstream geneCep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253H23.bB6Ng01-253H23.g
ACCGA060212GA060213
length1,111689
definitionB6Ng01-253H23.b B6Ng01-253H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,985,223 - 76,986,339)(76,791,866 - 76,792,554)
sequence
gaattccctggtaaccagcctgtgaacagaagcctgtcggggggaaacag
ccgtcaggagctgtgtagaagagtaagactgacagacaaaggagctaagg
aagtcggaactctattatggtcacttggcatttcttttattcttataata
tctataggtcaacttctgatcttatgctttatgctgtaaaacattctgaa
ctcactcactccgaaggtaaggcaaggcaagaaataaattgcataatatg
attaaagaataaactataacctaagaccatcttaaaaacagagggtgatg
tgtcacctggcaggtgccaggccacatgtgaggcaagccctgagctggcc
atcccagcgctgctgggttagtcagttccaccttcctcccctgcagctca
cggggacgtgagacaagcagcctagacattactgcggcaacaccacagcg
cagctgacttccaccgaagtgaacactgctgcctgaggtcttcaggtgtc
gctgtgcatgctcacctgtgtactgcagactaggcgtttgtttgttttta
aacagacggtcacgactagttaccagtactgcttattagttataacattc
tagactctctctgagcagcagattctcctgtaacgtccgtcttaagtatc
tttaagtcatccccagtagatgacaaacacaatagctgcagtgggtaggg
cctgtgctcactgctgcactttcagttcagcactgagtttatttgtatga
tggaaatcatcttccaccaagcctctgatccagtcttgcgttcaaatact
ttggaatcaaaagcttacttagctagggtgagaaacaatgataaggtgat
tttaggcacttctttaaagattttacagtgttaaatgggagtatcataat
cacataattatatatacaaaggaactaaagcctcctctatctttacagat
aactcagttgttttgttatatatgccagaccaagtattagcactgcctgt
ttaccccagtgacacatctgttcttagtgaggatgaaaacaaaagtaaag
tgtacttgtaaaaatatcactcatttcttttgctcatcatgttgagttac
atctgagaaga
gaattcacatttgtaacaaggtagtgtttagaatttaaaggaccctcaga
aagcaggaatgacagccccccccccccgcccccaaccaggttacctggta
actaaatgtccttgacagaatcaaaggatacaatttgctctgccactcat
ctggacctccctccctggtcttgcttttcttgtttcctgggagccacatt
cgggaggtccctgttgccatcaaatcccacctgccttgccagctttaagt
gcccatcactggaaacccggattagcctcaagtgcttccttcaactttct
gtgatgagaactctaatcctgaaaacctgtaagcccgggtctctgctcca
ctttgtaactcaacagcccgcctcccaggaggtgcagtgcagcacaactt
tatcttgcctcagcaaggggagcagcgaacctttgtttcaaccatcagtc
cctccaataactgcaatgaaagggaaaatgtttttaatttttttaaactc
ccgttatggagtctgcagcccgccctgcaccttcctcagccggagacgtc
tgcagtcctgggccagatcctggcttcagtggaaagtggattctagaagc
ccagagaagaagcaaggaaggtagaggagagaaatcggtgcagtggcagc
ctgagggggtcccgtgaggtggtagtggttggggggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_76985223_76986339
seq2: B6Ng01-253H23.b_46_1156 (reverse)

seq1  TCTTCTCCAGATGT-ACTCAACATGATGGAGGCAAAGGAAATTGAGTGAT  49
      |||||| ||||||| |||||||||||||   ||||| |||| ||||||| 
seq2  TCTTCT-CAGATGTAACTCAACATGATG--AGCAAAAGAAA-TGAGTGA-  45

seq1  TATTTTTACAGTTACCACTTTTACTTTTGTTTTCCTTCCTCACTTAAGAC  99
      ||||||||||  || ||| |||||||||||||| | |||||||| |  ||
seq2  TATTTTTACAAGTA-CAC-TTTACTTTTGTTTT-CATCCTCACTAAGAAC  92

seq1  AGATGTGTCACTGGGGT-AACAGGCAGTGCTAATACTTGGTCTGGCATAT  148
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGATGTGTCACTGGGGTAAACAGGCAGTGCTAATACTTGGTCTGGCATAT  142

seq1  ATAACAAAACAACTGAGTTATCTGTAAAGATAGAGGAGGCTTTAGTTCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAACAACTGAGTTATCTGTAAAGATAGAGGAGGCTTTAGTTCCT  192

seq1  TTGTATATATAATTATGTGATTATGATACTCCCATTTAACACTGTAAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATATAATTATGTGATTATGATACTCCCATTTAACACTGTAAAAT  242

seq1  CTTTAAAGAAGTGCCTAAAATCACCTTATCATTGTTTCTCACCCTAGCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGAAGTGCCTAAAATCACCTTATCATTGTTTCTCACCCTAGCTA  292

seq1  AGTAAGCTTTTGATTCCAAAGTATTTGAACGCAAGACTGGATCAGAGGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTTTTGATTCCAAAGTATTTGAACGCAAGACTGGATCAGAGGCT  342

seq1  TGGTGGAAGATGATTTCCATCATACAAATAAACTCAGTGCTGAACTGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAGATGATTTCCATCATACAAATAAACTCAGTGCTGAACTGAAA  392

seq1  GTGCAGCAGTGAGCACAGGCCCTACCCACTGCAGCTATTGTGTTTGTCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCAGTGAGCACAGGCCCTACCCACTGCAGCTATTGTGTTTGTCAT  442

seq1  CTACTGGGGATGACTTAAAGATACTTAAGACGGACGTTACAGGAGAATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGGGATGACTTAAAGATACTTAAGACGGACGTTACAGGAGAATCT  492

seq1  GCTGCTCAGAGAGAGTCTAGAATGTTATAACTAATAAGCAGTACTGGTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCAGAGAGAGTCTAGAATGTTATAACTAATAAGCAGTACTGGTAA  542

seq1  CTAGTCGTGACCGTCTGTTTAAAAACAAACAAACGCCTAGTCTGCAGTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCGTGACCGTCTGTTTAAAAACAAACAAACGCCTAGTCTGCAGTAC  592

seq1  ACAGGTGAGCATGCACAGCGACACCTGAAGACCTCAGGCAGCAGTGTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAGCATGCACAGCGACACCTGAAGACCTCAGGCAGCAGTGTTCA  642

seq1  CTTCGGTGGAAGTCAGCTGCGCTGTGGTGTTGCCGCAGTAATGTCTAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTGGAAGTCAGCTGCGCTGTGGTGTTGCCGCAGTAATGTCTAGGC  692

seq1  TGCTTGTCTCACGTCCCCGTGAGCTGCAGGGGAGGAAGGTGGAACTGACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCTCACGTCCCCGTGAGCTGCAGGGGAGGAAGGTGGAACTGACT  742

seq1  AACCCAGCAGCGCTGGGATGGCCAGCTCAGGGCTTGCCTCACATGTGGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCAGCGCTGGGATGGCCAGCTCAGGGCTTGCCTCACATGTGGCC  792

seq1  TGGCACCTGCCAGGTGACACATCACCCTCTGTTTTTAAGATGGTCTTAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCTGCCAGGTGACACATCACCCTCTGTTTTTAAGATGGTCTTAGG  842

seq1  TTATAGTTTATTCTTTAATCATATTATGCAATTTATTTCTTGCCTTGCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTATTCTTTAATCATATTATGCAATTTATTTCTTGCCTTGCCT  892

seq1  TACCTTCGGAGTGAGTGAGTTCAGAATGTTTTACAGCATAAAGCATAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCGGAGTGAGTGAGTTCAGAATGTTTTACAGCATAAAGCATAAGA  942

seq1  TCAGAAGTTGACCTATAGATATTATAAGAATAAAAGAAATGCCAAGTGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTGACCTATAGATATTATAAGAATAAAAGAAATGCCAAGTGAC  992

seq1  CATAATAGAGTTCCGACTTCCTTAGCTCCTTTGTCTGTCAGTCTTACTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAGTTCCGACTTCCTTAGCTCCTTTGTCTGTCAGTCTTACTCT  1042

seq1  TCTACACAGCTCCTGACGGCTGTTTCCCCCCGACAGGCTTCTGTTCACAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAGCTCCTGACGGCTGTTTCCCCCCGACAGGCTTCTGTTCACAG  1092

seq1  GCTGGTTACCAGGGAATTC  1117
      |||||||||||||||||||
seq2  GCTGGTTACCAGGGAATTC  1111

seq1: chr5_76791866_76792554
seq2: B6Ng01-253H23.g_66_754

seq1  GAATTCACATTTGTAACAAGGTAGTGTTTAGAATTTAAAGGACCCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTGTAACAAGGTAGTGTTTAGAATTTAAAGGACCCTCAGA  50

seq1  AAGCAGGAATGACAGCCCCCCCCCCCCGCCCCCAACCAGGTTACCTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAATGACAGCCCCCCCCCCCCGCCCCCAACCAGGTTACCTGGTA  100

seq1  ACTAAATGTCCTTGACAGAATCAAAGGATACAATTTGCTCTGCCACTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGTCCTTGACAGAATCAAAGGATACAATTTGCTCTGCCACTCAT  150

seq1  CTGGACCTCCCTCCCTGGTCTTGCTTTTCTTGTTTCCTGGGAGCCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTCCCTCCCTGGTCTTGCTTTTCTTGTTTCCTGGGAGCCACATT  200

seq1  CGGGAGGTCCCTGTTGCCATCAAATCCCACCTGCCTTGCCAGCTTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGTCCCTGTTGCCATCAAATCCCACCTGCCTTGCCAGCTTTAAGT  250

seq1  GCCCATCACTGGAAACCCGGATTAGCCTCAAGTGCTTCCTTCAACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCACTGGAAACCCGGATTAGCCTCAAGTGCTTCCTTCAACTTTCT  300

seq1  GTGATGAGAACTCTAATCCTGAAAACCTGTAAGCCCGGGTCTCTGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGAACTCTAATCCTGAAAACCTGTAAGCCCGGGTCTCTGCTCCA  350

seq1  CTTTGTAACTCAACAGCCCGCCTCCCAGGAGGTGCAGTGCAGCACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAACTCAACAGCCCGCCTCCCAGGAGGTGCAGTGCAGCACAACTT  400

seq1  TATCTTGCCTCAGCAAGGGGAGCAGCGAACCTTTGTTTCAACCATCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCCTCAGCAAGGGGAGCAGCGAACCTTTGTTTCAACCATCAGTC  450

seq1  CCTCCAATAACTGCAATGAAAGGGAAAATGTTTTTAATTTTTTTAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATAACTGCAATGAAAGGGAAAATGTTTTTAATTTTTTTAAACTC  500

seq1  CCGTTATGGAGTCTGCAGCCCGCCCTGCACCTTCCTCAGCCGGAGACGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTATGGAGTCTGCAGCCCGCCCTGCACCTTCCTCAGCCGGAGACGTC  550

seq1  TGCAGTCCTGGGCCAGATCCTGGCTTCAGTGGAAAGTGGATTCTAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCTGGGCCAGATCCTGGCTTCAGTGGAAAGTGGATTCTAGAAGC  600

seq1  CCAGAGAAGAAGCAAGGAAGGTAGAGGAGAGAAATCGGTGCAGTGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAGAAGCAAGGAAGGTAGAGGAGAGAAATCGGTGCAGTGGCAGC  650

seq1  CTGAGGGGGTCCCGTGAGGTGGTAGTGGTTGGGGGGATG  689
      |||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGGTCCCGTGAGGTGGTAGTGGTTGGGGGGATG  689