BAC Information

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BAC

Clone NameB6Ng01-253J16
Chromosome5 (Build37)
Map Location 95,061,931 - 95,062,971
singlet/doubletsinglet
Overlap genenone
Upstream geneC87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507
Downstream geneLOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253J16.bB6Ng01-253J16.g
ACCGA060292GA060293
length1,041772
definitionB6Ng01-253J16.b B6Ng01-253J16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacctgagaaatagcgaatggcagagaagcaccttaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaactctgaga
ttccacctcaaaccagtcaggatggctgagatcaaaaattcattttccat
tctttacgctgccattttttcctattgatgctgtcttttgccttacagag
gatattcagtttcatgaagcccatttattgttgatcttaatgcataagct
atggttgttctgtgcagtaattagtcaacttttacaataactttgagagc
cctgacaccattaatgatattcttcaaccagtagcatttaggagtggagg
atatcaaactatttacagtactagtgttttgttttcctctaatctaattg
tgactgtgccccttttcttttctcttgaagtaaaaagtatttcatatgca
agagccaccatgagctatagcctaaaaaggaagctcctgttactcgaaac
tagggatcactgagcaagagtgagggagagtgactggcatttctttcttt
tcctttctttccttttctttttttgatattatatttattagatatttttt
atttacatttcaaatgttaccccctttcctagtttctcctccaaaaatcc
cctatctcctacccctccccatggtcaagagcccacccactcccattgct
tgtcctggcaatcccctatattgaggcagagagtcttcccaggaccaagg
gtctctcctccctttgatgactgactaggcaatcctctgctacaaatata
gctagagcctcaagttccaccatgtgttttctttggttggtggtatagct
ccaagtagctctaagtgtactggttagttcatattgatgttccttctatg
aggcttcagtccccttcagctccctggctgttttctctggctcatccagt
gcgaccttgtgctccgtccatagaaaactatgagcattcacttctgtatt
tgcaggcactggcagagcctcgcagagacagctatatcaga
gaattctttgtttggctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatatatattggatattag
tcttctatctggtttaggataggtaaagatactttcccaatctgttgatg
gtctttttgtcttattgacggtgtcttttgccttacagaagctttgcagt
ttcatgaggtcccatttgtcaattctcgttcttacagcacaagccattgc
tgttctattcaggaattttccccctgtgccaatatcttcgaggcttctct
ccactttcacctctataagttttagtgtctctggttttatgtggagctcc
ttgatccacttagatttgaccttaggatccatcgcataatcagcctccaa
acactgacaccattgcatacactagcaagattgtgctgatagtaccctga
tataacagtctctagtgagactatgcagggcctagcaaacacataagtgg
atgctcacagtcagctattggacggatcacagggcccccaatggaggagc
tagagaaaatacccaagaagctaaagggatctgcaacccatataggtgga
acaacattatgcactaaccagtaccatggagctcttgactctagctgcat
atgtatcaaaagatggcctagtcggccatcactggaaagagaggcccatt
ggacttgcaaactttatatgcccctgtacaggggaatgccagggccaaaa
agtgggagtgggtgggtagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95061931_95062971
seq2: B6Ng01-253J16.b_45_1081

seq1  GAATTCTCACCTGAGAAATAGCGAATGGCAGAGAAGCACCTTAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGAAATAGCGAATGGCAGAGAAGCACCTTAAAAAAAT  50

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTGAGA  100

seq1  TTCCACCTCAAACCAGTCAGGATGGCTGAGATCAAAAATTCATTTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCAAACCAGTCAGGATGGCTGAGATCAAAAATTCATTTTCCAT  150

seq1  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200

seq1  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250

seq1  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300

seq1  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350

seq1  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400

seq1  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGTATTTCATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGTATTTCATATGCA  450

seq1  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500

seq1  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550

seq1  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600

seq1  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650

seq1  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700

seq1  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750

seq1  GTCTCTCCTCCCATTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCCCTTTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800

seq1  GCTAGAGCCTCAAGTTCCACCATGTGTTTTCTTTGGTTGGTGGTATAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCCTCAAGTTCCACCATGTGTTTTCTTTGGTTGGTGGTATAGCT  850

seq1  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATATTGATGTTCCTTCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATATTGATGTTCCTTCTATG  900

seq1  AGGCTTCAGTCCCCTTCAGCTCCCTGGCTGTTTTCTCTGGCTCATCCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCAGTCCCCTTCAGCTCCCTGGCTGTTTTCTCTGGCTCATCCAGT  950

seq1  GGCGACCTTGTGCTCCGTCCAATAGAAAACTATGAGCATTCACTTCTGTA  1000
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  -GCGACCTTGTGCTCCGTCC-ATAGAAAACTATGAGCATTCACTTCTGTA  998

seq1  TTTGCCAGGCACTGGCAGAGCCTCGCAGGAGACAGCTATAT  1041
      |||| |||||||||||||||||||||| |||||||||||||
seq2  TTTG-CAGGCACTGGCAGAGCCTCGCA-GAGACAGCTATAT  1037