BAC Information

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BAC

Clone NameB6Ng01-253L17
Chromosome5 (Build37)
Map Location 49,438,870 - 49,592,610
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253L17.bB6Ng01-253L17.g
ACCGA060384GA060385
length1,1381,175
definitionB6Ng01-253L17.b B6Ng01-253L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,438,870 - 49,439,996)(49,591,458 - 49,592,610)
sequence
gaattcattgagcttacttattcataataccaattacagaggaaaaatga
atacacttattttaaagtcctcaccaaaggaagaagtgggacaaattaaa
ccttccagataaaataatgaccaacattattataatgctatcataatcaa
cacaggttcatatacagataatcatatgcagaccataaatgtgcatatgt
gtttgtgcatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtactataaact
tcttcattcactctaatgagaagatctttctctctgataagcttggtgaa
aatgcagatcaatatgggcaatgcagaaaccatctctggctatatcagaa
gacatcaattgtcaagtaattagaagattgcttctgtaagtgaacagcta
tataatcctgactgctcaaatcactgtaatcattttatttgttctattct
ctagaggaatcttaaacagagcctgctgtgattgttttgttatttcaaat
ctgcctagtaattttccagtgtattagaagatattcagtgttgacagtgt
tcagagggggattgggcttctgcctgatgaaactgttcattttcagtcaa
cataattactctgcatccacacatctgctatttaaacaatacaacactct
catttttttgctttgctaataattaacttaatgggatgatacatctttat
tcaacgtgaaaaaaaatatcagccttatttctacattgtgaaaattgtgc
ttagtcaaatgaaattatttgacttcagctgatgccattcataaatctca
attgcatgaccttccaaaacaaggcaagatagatcaaaaccatgagcatg
attcctagcatatataacagtgtttataatattggaagaatactacctca
actcatacaaaaaaaaaaaaagactctttatctaagtccttcaaacactg
tcttattattatgacatgcccaatcattatcaagactatcaaaaaacaat
ttccttgcccactagctttttttcacacactggtgcttttataaaaatct
tcagtactgtcatattctttgtactaaattaaaacaatcccttatttaat
atgtcacagtcattccttctgctcctttttctttacaa

gaattcaatgtctctttacactgggaattttctaatacaattggagatct
ggagagaagtaatttgaccactttgaggcgtttgaaataattgatcaaag
caaaagctgtttctacttagctttgcttttctgagttagtctttcattct
ctttattcacaaagactttcaaagtgattgcctgagtttgtctaaattta
atgtgttaagaaggaatattaaaatctactgtaatttcttgagacaggat
taaatcaaccataacctttcagtaggatactgcaaatgttttgtcagttg
gcttacttcattaatatataacacttcatgcagaaatcagattattggga
ttcattgcccacttaaaaatggttcccaaagcaaacagaactaatatttt
atttattttgctagtatcacactcatatctgataactaatgaaagatctt
ttactttcaaaaatgaaataatattggcctatattggttattgctcataa
aaagcattttattatgaattcatacaactctaagtaaaaattctggctct
taaagctagtatggataaaaatacagttggattacttacattcatttagg
gatagtttcttcagttacaaatggagggactgaaaaataattgtcccaat
ctctcatctctctctctctctctctctctctctctctccctctctccctc
tctccctctccctttctctctctccctccccctctcccccctctctcaga
tatgcacatatacatgtaaatcaaatgtatgtgttcatgtatctgaaatt
ttctgtgaacactactcagcttgaaatagtgaagggcttataatttgcca
gttgagaaaaaaagtcaaccctggtaaaatgaaaataacatatatttgtg
ctaatttaggatttcagtctgagaaagagatttgtagtgtttttaaaaaa
atattggtcagagggttttaataaaatgtcagctctatttataggtatta
aaatcacagatttgggaatgaccatcatttgtattccaatttttttaata
ttctgtacatttttatggtatttatattttctccccatcctcctcaatgg
tccctcctttgcacctgagcctcccctcttaaatcatggccttaaaaagc
tattatattagtatactttaataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49438870_49439996
seq2: B6Ng01-253L17.b_46_1183

seq1  GAATTCATTGAGCTTACTTATTCATAATACCAATTACAGAGGAAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGCTTACTTATTCATAATACCAATTACAGAGGAAAAATGA  50

seq1  ATACACTTATTTTAAAGTCCTCACCAAAGGAAGAAGTGGGACAAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTATTTTAAAGTCCTCACCAAAGGAAGAAGTGGGACAAATTAAA  100

seq1  CCTTCCAGATAAAATAATGACCAACATTATTATAATGCTATCATAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGATAAAATAATGACCAACATTATTATAATGCTATCATAATCAA  150

seq1  CACAGGTTCATATACAGATAATCATATGCAGACCATAAATGTGCATATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTCATATACAGATAATCATATGCAGACCATAAATGTGCATATGT  200

seq1  GTTTGTGCATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTACTATAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTACTATAAACT  250

seq1  TCTTCATTCACTCTAATGAGAAGATCTTTCTCTCTGATAAGCTTGGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTCACTCTAATGAGAAGATCTTTCTCTCTGATAAGCTTGGTGAA  300

seq1  AATGCAGATCAATATGGGCAATGCAGAAACCATCTCTGGCTATATCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATCAATATGGGCAATGCAGAAACCATCTCTGGCTATATCAGAA  350

seq1  GACATCAATTGTCAAGTAATTAGAAGATTGCTTCTGTAAGTGAACAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAATTGTCAAGTAATTAGAAGATTGCTTCTGTAAGTGAACAGCTA  400

seq1  TATAATCCTGACTGCTCAAATCACTGTAATCATTTTATTTGTTCTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCTGACTGCTCAAATCACTGTAATCATTTTATTTGTTCTATTCT  450

seq1  CTAGAGGAATCTTAAACAGAGCCTGCTGTGATTGTTTTGTTATTTCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAATCTTAAACAGAGCCTGCTGTGATTGTTTTGTTATTTCAAAT  500

seq1  CTGCCTAGTAATTTTCCAGTGTATTAGAAGATATTCAGTGTTGACAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGTAATTTTCCAGTGTATTAGAAGATATTCAGTGTTGACAGTGT  550

seq1  TCAGAGGGGGATTGGGCTTCTGCCTGATGAAACTGTTCATTTTCAGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGGGATTGGGCTTCTGCCTGATGAAACTGTTCATTTTCAGTCAA  600

seq1  CATAATTACTCTGCATCCACACATCTGCTATTTAAACAATACAACACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTACTCTGCATCCACACATCTGCTATTTAAACAATACAACACTCT  650

seq1  CATTTTTTTGCTTTGCTAATAATTAACTTAATGGGATGATACATCTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTGCTTTGCTAATAATTAACTTAATGGGATGATACATCTTTAT  700

seq1  TCAACGTGAAAAAAAATATCAGCCTTATTTCTACATTGTGAAAATTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGTGAAAAAAAATATCAGCCTTATTTCTACATTGTGAAAATTGTGC  750

seq1  TTAGTCAAATGAAATTATTTGACTTCAGCTGATGCCATTCATAAATCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAAATGAAATTATTTGACTTCAGCTGATGCCATTCATAAATCTCA  800

seq1  ATTGCATGACCTTCCAAAACAAGGCAAGATAGATCAAAACCATGAGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGACCTTCCAAAACAAGGCAAGATAGATCAAAACCATGAGCATG  850

seq1  ATTCCTAGCATATATAACAGTGTTTATAATATTGGAAGAATACTACC-CA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTCCTAGCATATATAACAGTGTTTATAATATTGGAAGAATACTACCTCA  900

seq1  ACTCATAC-AAAAAAAAAAAAGACTCTTTATCTAAGTCC-TCAAACACTG  947
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCATACAAAAAAAAAAAAAGACTCTTTATCTAAGTCCTTCAAACACTG  950

seq1  TCTTA-TATTATGACATGCCCAATCATTATCAAGACTATC-AAAAACAAT  995
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTTATTATTATGACATGCCCAATCATTATCAAGACTATCAAAAAACAAT  1000

seq1  TTCCCTTGCCCACTAGCTTTTTTCCACCACACCTGTGCTTTTAT-AAAAT  1044
      || |||||||||||||||||||| || |||||  |||||||||| |||||
seq2  TT-CCTTGCCCACTAGCTTTTTTTCA-CACACTGGTGCTTTTATAAAAAT  1048

seq1  CTTCAGTACTGTCATATTCTTTTGTACTTAATTTAAACAATCCC-TATT-  1092
      ||||||||||||||||||| |||||||| |||| |||||||||| |||| 
seq2  CTTCAGTACTGTCATATTC-TTTGTACTAAATTAAAACAATCCCTTATTT  1097

seq1  -ATATGTCACAGTCA-TCCTTCTGCTC---TTTC-TTACAA  1127
       |||||||||||||| |||||||||||   |||| ||||||
seq2  AATATGTCACAGTCATTCCTTCTGCTCCTTTTTCTTTACAA  1138


seq1: chr5_49591458_49592610
seq2: B6Ng01-253L17.g_68_1242 (reverse)

seq1  GTTAT--AAGTATA--TATATAATAGTTTTTTAAAGGCCATGATTTTAAG  46
      |||||  |||||||   ||||||||| ||||| |||||||||| ||||||
seq2  GTTATTAAAGTATACTAATATAATAGCTTTTT-AAGGCCATGA-TTTAAG  48

seq1  AGGG--AGCTCAGGTGCAAAGGAGG--ACATGGAG--AGAT-GGGAG-AA  88
      ||||   ||||||||||||||||||   ||| |||   ||| ||||| ||
seq2  AGGGGAGGCTCAGGTGCAAAGGAGGGACCATTGAGGAGGATGGGGAGAAA  98

seq1  ATATAAATACAAT-AAAATGTACAGAATAT--AAAAAATTTGAATACAAA  135
      |||||||||| || ||||||||||||||||  |||||||| |||||||||
seq2  ATATAAATACCATAAAAATGTACAGAATATTAAAAAAATTGGAATACAAA  148

seq1  TGAT-GTCATTCCCAATCTTGTGA-TTTAATA-CTATAAATAGAGCTGAC  182
      |||| |||||||||||   ||||| ||||||| |||||||||||||||||
seq2  TGATGGTCATTCCCAAATCTGTGATTTTAATACCTATAAATAGAGCTGAC  198

seq1  ATTTTAT--AAAACCTCTGA-CAATATTTTTTT-AAGACACTACAAATCT  228
      |||||||  ||| ||||||| |||||||||||| || |||||||||||||
seq2  ATTTTATTAAAACCCTCTGACCAATATTTTTTTAAAAACACTACAAATCT  248

seq1  CTTTCTCAGACTGAAATCCTAAATTAGCACAAATATATGTTATTTTCATT  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGACTGAAATCCTAAATTAGCACAAATATATGTTATTTTCATT  298

seq1  TTACCA-GGTTGACTTTTTTTCTCAACTGGCAAATTATAAGCCCTTCACT  327
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGGGTTGACTTTTTTTCTCAACTGGCAAATTATAAGCCCTTCACT  348

seq1  ATTTCAAGCTGAGTAGTGTTCACAG-AAATTTCAGATACATGAACACATA  376
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTCAAGCTGAGTAGTGTTCACAGAAAATTTCAGATACATGAACACATA  398

seq1  CATTTGATTTACATGTATATGTGCATATCTGAGAGAGGGGGGAGAGGGGG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATTTACATGTATATGTGCATATCTGAGAGAGGGGGGAGAGGGGG  448

seq1  AGGGAGAGAGAGAAAGGGAGAGGGAGAGAGGGAGAGAGGGAGAGAGAGAG  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGAGAAAGGGAGAGGGAGAGAGGGAGAGAGGGAGAGAGAGAG  498

seq1  AGAGAGAGAGAGAGAGAGAGATGAGAGATTGGGACAATTATTTTTCAGTC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGATGAGAGATTGGGACAATTATTTTTCAGTC  548

seq1  CCTCCATTTGTAACTGAAGAAACTATCCCTAAATGAATGTAAGTAATCCA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTTGTAACTGAAGAAACTATCCCTAAATGAATGTAAGTAATCCA  598

seq1  ACTGTATTTTTATCCATACTAGCTTTAAGAGCCAGAATTTTTACTTAGAG  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTTTATCCATACTAGCTTTAAGAGCCAGAATTTTTACTTAGAG  648

seq1  TTGTATGAATTCATAATAAAATGCTTTTTATGAGCAATAACCAATATAGG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAATTCATAATAAAATGCTTTTTATGAGCAATAACCAATATAGG  698

seq1  CCAATATTATTTCATTTTTGAAAGTAAAAGATCTTTCATTAGTTATCAGA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTATTTCATTTTTGAAAGTAAAAGATCTTTCATTAGTTATCAGA  748

seq1  TATGAGTGTGATACTAGCAAAATAAATAAAATATTAGTTCTGTTTGCTTT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGTGATACTAGCAAAATAAATAAAATATTAGTTCTGTTTGCTTT  798

seq1  GGGAACCATTTTTAAGTGGGCAATGAATCCCAATAATCTGATTTCTGCAT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCATTTTTAAGTGGGCAATGAATCCCAATAATCTGATTTCTGCAT  848

seq1  GAAGTGTTATATATTAATGAAGTAAGCCAACTGACAAAACATTTGCAGTA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTATATATTAATGAAGTAAGCCAACTGACAAAACATTTGCAGTA  898

seq1  TCCTACTGAAAGGTTATGGTTGATTTAATCCTGTCTCAAGAAATTACAGT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGAAAGGTTATGGTTGATTTAATCCTGTCTCAAGAAATTACAGT  948

seq1  AGATTTTAATATTCCTTCTTAACACATTAAATTTAGACAAACTCAGGCAA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAATATTCCTTCTTAACACATTAAATTTAGACAAACTCAGGCAA  998

seq1  TCACTTTGAAAGTCTTTGTGAATAAAGAGAATGAAAGACTAACTCAGAAA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGAAAGTCTTTGTGAATAAAGAGAATGAAAGACTAACTCAGAAA  1048

seq1  AGCAAAGCTAAGTAGAAACAGCTTTTGCTTTGATCAATTATTTCAAACGC  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCTAAGTAGAAACAGCTTTTGCTTTGATCAATTATTTCAAACGC  1098

seq1  CTCAAAGTGGTCAAATTACTTCTCTCCAGATCTCCAATTGTATTAGAAAA  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTGGTCAAATTACTTCTCTCCAGATCTCCAATTGTATTAGAAAA  1148

seq1  TTCCCAGTGTAAAGAGACATTGAATTC  1153
      |||||||||||||||||||||||||||
seq2  TTCCCAGTGTAAAGAGACATTGAATTC  1175


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