BAC Information

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BAC

Clone NameB6Ng01-253M21
Chromosome5 (Build37)
Map Location 15,131,923 - 15,132,965
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253M21.bB6Ng01-253M21.g
ACCGA060436GA060437
length1,0961,162
definitionB6Ng01-253M21.b B6Ng01-253M21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtcaatttgatacagagagaacagtacaaagaatccgtgaaac
caagatcctgttctttgagacaatcaacaaggtagacttatgcttagcca
aattaactgaaaggtagagagacaatacccagaatagcaaaatcagaaat
gaaacaggagacataacaatggacactgaggtaattgaaagaattactag
gtcttactgcagaagcctgtactgcaaaaaatagcaaaatccaaatgaaa
tgggtgacttatagacagctagctattaattatcaaagttaaatgaagat
ctggtaaagtaactaacaggcctataacccctaagaaaatagaaactcat
caaaagtcctccactccaaaaaagcccaagggcagaaagttgtagtgcag
aattctactagatattcaaaaaagagttagtgaaatactcctcaaattat
tcataaagtagaaacagaagaaacatagctaaactcattctatgagttca
tactcaccctgatacagaaaccacacaaagactcaacaaagaaagaggaa
ttcagtccaatttctcttttttaaccacttcatactaatttacttatctt
catagtaaggaagaatatgtcttccttgtgtatttaaaattatgagatta
gatactgatattggacagaaggtaattgggttcataagaagtgatacata
atagaaaagaacatgttcatggatttggagtcaggactatgctgtgtatt
ggttattgaaaattaatatcagagtgacacagttgtgtgtctttaggaag
atgactggtgggagacactgatcctaaaatgcctttgtattttagtctat
tttcctagaaaaacataggaaaaaagagtatattggggtacatgcaggaa
acaggtcaggagccattaaatattcccagaggaaaagtttcaaccagttg
ctaaaagtgttttaccaggtgggatggaagatatcctttcaatacattgt
gtgaatgggtgagcgaagcttactatcatctctttcactttctctctact
tggggtactcaaagaattccaatctttccacaaaatctggttctac

gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acatacatacatacatacacacatacacatgcacacatacacacgtacac
acacacacacacacacacacacatacacacatacacacatacacacatac
acacatacacacatacaattggtttgtctgtttagttttggatgggtttg
aggtgtggttgttgttggtttgtttttgaaacagagtctgtctatgtagc
cttggctgtcatggaatttgctttgtaaaccaggctggcctcaaattcag
agattcaccttcttctgtcttctgagaactagtagtcaagtctccacgcc
cagcagtttgaattgttggattaaagattttggacatttgtctactttat
cttttctattaagatagaaagaagatagcctattattcaaatttactcag
aaaattattttatagtcagtcatggctggaatgcagatataaaaaaatca
gattgtttggaactgaaaaaaaaaaagataaaaagtttaagaaactcttt
aaaaatttcccttttcaaaactggctggccattcatatagctcatgaatc
ttaaggtttaacaatataagtgagtagcctcagcttatttcagtttgtct
taaatttaatttaggtttaatcatgtgtctatatacctgtacttttatca
tcgtgttatttttccttataacttaactgttaacattaatagacctcaaa
aaaataaatacatttaaatccgatgagcacaagatgttcagatttgttag
caaacgtcttgcttttgtcactgtagcttctaggccccaagtacagccat
tctggggatttctgttagcgccgaagtgacttaaggaatttccttgctca
tctggtgtctttacacgtcacagagaatccaagtgacgtgaaaaagaaag
gaaacggaaacagatgggatcagttcctggatgagcgtgagccactagag
cctccgagccactcacaagctagctaacaccgaaaacatcctcctcaacg
tagctccagaagtgtaaagggaagagactccacactacctggccttgatt
aagtgtgtttcatattgttatcacaaactgcctttgatggacatcagaga
atacgtatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15131923_15132965
seq2: B6Ng01-253M21.b_113_1140

seq1  GACAATCAACAAGGTAGACTTATGCTTAGCCAAATTAACTGAAAGGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCAACAAGGTAGACTTATGCTTAGCCAAATTAACTGAAAGGTAGA  50

seq1  GAGACAATACCCAGAATAGCAAAATCAGAAATGAAACAGGAGACATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATACCCAGAATAGCAAAATCAGAAATGAAACAGGAGACATAACA  100

seq1  ATGGACACTGAGGTAATTGAAAGAATCACTAGGTCTTACTGCAGAAGCCT  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGGACACTGAGGTAATTGAAAGAATTACTAGGTCTTACTGCAGAAGCCT  150

seq1  GTACTGCAAAAAATAGCAAAATCCAAATGAAATGGGTGACTTATAGAC--  198
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GTACTGCAAAAAATAGCAAAATCCAAATGAAATGGGTGACTTATAGACAG  200

seq1  --AGCTATCAATTATCAAAGTTAAATGAAGATCTGGTAAAGTAACTAACA  246
        |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATTAATTATCAAAGTTAAATGAAGATCTGGTAAAGTAACTAACA  250

seq1  GGCCTATAACCCCTAAGGAAATAGAAACAGTCATCAAAAGTCCTCCACTC  296
      ||||||||||||||||| ||||||||||  ||||||||||||||||||||
seq2  GGCCTATAACCCCTAAGAAAATAGAAAC--TCATCAAAAGTCCTCCACTC  298

seq1  CAAAAAAGCCCAAGGGCAGAAAGTTGTAGTGCAGAATTCTACTAGATATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGCCCAAGGGCAGAAAGTTGTAGTGCAGAATTCTACTAGATATT  348

seq1  CAAAAAAGAGTTATTGAAATACTCCTCAAATTATTCATAAAGTAGTAACA  396
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  CAAAAAAGAGTTAGTGAAATACTCCTCAAATTATTCATAAAGTAGAAACA  398

seq1  GAAGAAAAATAGCTAAACTCATTCTATGAGTTCATAGTCACCCTGATACA  446
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGAAACATAGCTAAACTCATTCTATGAGTTCATACTCACCCTGATACA  448

seq1  GAAACCACACAAAGACTCAACAAAGAAAGAGGAATTCGGTCCAATTTCTC  496
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAACCACACAAAGACTCAACAAAGAAAGAGGAATTCAGTCCAATTTCTC  498

seq1  TTTTTTAACCACTTCATACTAATTTACTTATCTTCATAATAAGGAAGAAT  546
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTTTAACCACTTCATACTAATTTACTTATCTTCATAGTAAGGAAGAAT  548

seq1  ATGTCTTCCTTGTGTATTTAAAATTATGAGATTAGATACTCATATTGGAC  596
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGTCTTCCTTGTGTATTTAAAATTATGAGATTAGATACTGATATTGGAC  598

seq1  AGAAGGTAATTGGGTTCATAAGAAGTGATACATAATAGAAAAGAACATGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAATTGGGTTCATAAGAAGTGATACATAATAGAAAAGAACATGT  648

seq1  TCATGGATTTGGAGTCAGGACTATGCTGTGTATTGGTTATTGAAAATTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTTGGAGTCAGGACTATGCTGTGTATTGGTTATTGAAAATTAA  698

seq1  TATCAGAGTGACACAGTTGTGTGTCTTTAGGAAGATGACTGGTGGGAGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGTGACACAGTTGTGTGTCTTTAGGAAGATGACTGGTGGGAGAC  748

seq1  ACTGATCCTAAAATGCCTTCTGTATTTTAGTCCAT----ACAGAAAAACA  792
      ||||||||||||||||||| |||||||||||| ||      |||||||||
seq2  ACTGATCCTAAAATGCCTT-TGTATTTTAGTCTATTTTCCTAGAAAAACA  797

seq1  TAGGAAAAAAAGAATATATTGGAGTACATCCAGGAAACAGTTCTGGAAGC  842
      |||| |||||||| |||||||| |||||| |||||||||| || || |||
seq2  TAGG-AAAAAAGAGTATATTGGGGTACATGCAGGAAACAGGTCAGG-AGC  845

seq1  CATTAAATATTCCCAGAGGAAAAGTTTCAACCAGTTGCTAAAAGTGTTTT  892
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATTAAATATTCCCAGAGGAAAAGTTTCAACCAGTTGCTAAAAGTG-TTT  894

seq1  TACCAGGTGGGATGAAAGATATCCTTTCAAATACAATTGGTGTGAAATGG  942
      |||||||||||||| ||||||||||||| ||||||  | ||||| |||||
seq2  TACCAGGTGGGATGGAAGATATCCTTTC-AATACA--TTGTGTG-AATGG  940

seq1  GTGAGCGAAAGCTTTACCTATTCACCCTCTTTCCACTTTCTCTCTACTTT  992
      ||||||| ||||||   ||| |||  |||||| |||||||||||||||| 
seq2  GTGAGCG-AAGCTT--ACTA-TCA-TCTCTTT-CACTTTCTCTCTACTT-  983

seq1  GGGGTTACTCAAAGAATCCCAAAACCTTTCCACCAAAATCTGGGTTTCTA  1042
       ||| |||||||||||| ||  || ||||||| ||||||||||  |||||
seq2  -GGGGTACTCAAAGAATTCC--AATCTTTCCA-CAAAATCTGG--TTCTA  1027

seq1  C  1043
      |
seq2  C  1028


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