BAC Information

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BAC

Clone NameB6Ng01-253M24
Chromosome5 (Build37)18 (Build37)
Map Location 16,188,083 - 16,189,2536,652,731 - 6,653,425
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
Downstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253M24.bB6Ng01-253M24.g
ACCGA060442GA060443
length1,173496
definitionB6Ng01-253M24.b B6Ng01-253M24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,188,083 - 16,189,253)(6,652,731 - 6,653,425)
sequence
gaattcatgcccactgttcgatcatgttataacaactcacaagcaaaatg
atctggggaagtttgcagggcttttggccttacaattcttatctattaat
gtaagaatatttttcagtgatatcttgaaaagggtctggcccactcttaa
tactgaaattactgttaataaaaatttcagctgcttatttgttcaaactt
acttgcttgcttataatttttaaaagtactgtactatatacttcttctgg
tcaacaaaacatctggagaggtatattttttcaatttgttacgtctttgt
atttgtaataagtcaagccctgacctacaggtagctctgtatgcgtactg
ccatttatcatgtcagattaaagcaaaatttactgtgttttctttactct
actttaactacgtatactcttactactgaattctatctgagccaaaaagg
aatcagtcagagttgatgtttgaagctttctgtattcatgaagttaggga
aaatatgtgtcttgagataaaaacacagctgaggtttggttacggctagc
tgcctggaatctaaactctctgttaagtagttaaataagcccaacatctg
gctggccctttattattcattctgcttcctagggggaaatattgcaaatg
agaaagcatatgttgacttgggatcatttcaataaaaactctttcttatg
caaatatttatcttaaaatcctaaaaactactaatgaaggcaaacatttt
tgaatagacaatggaatactgttgacactgggaatgtgggatgtggagag
agctaaattttcaaggataaaccgagattcccctttggggatacttaaga
gagttgcttatgtttttttgagtcttactaaagtaaatatatattgttta
caaacatgaaaaagaaacaacagcaaacacaaaattatgtaaagattcaa
atagataattttattgtagctataggaaggcagcaatttttgctgaattt
actttccacaattatcttgtgactctaacagaagccatgaaattagtact
gtttttcttatttgtggggaagaaaaattggaacctaagaactactacca
gcctaaagtagcctatgagttgattgttgctgttttcctagggtccttgc
ctagaactgtagcttcctaaaag

ttttctggatatatgaaatgagtacacttgcacaaaacgagtacctttgc
atttgtggtagccaacaagtatttgctgacaggagcctcatatagctatc
tctgagaggctttgccagagcctgacaaatacagaggtagatgctcacag
ccaaccactggactgagcacgggatccccaatgcagaagctagaggaaag
acccaaggagctgaaggggtttgtagccccataggaggaccaacaatgtg
aaccaacgagaaccaccagagctcccagggactaaaccaccaaccaaaga
gtatacatagagggacccttggctccatccatatatataaaacagaggat
ggccttgtcggacatcaatgagaggagagcctccttggtcctgggaaggc
ttggtgccccagtgtagtagaatgccaggacagggaagcaggattgggtg
ggttggtgagcaaggggaggggtatggaatagagggttttcatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16188083_16189253
seq2: B6Ng01-253M24.b_46_1218

seq1  GAATTCATGCCCACTGTTCGATCATGTTATAACAACTCACAAGCAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCCACTGTTCGATCATGTTATAACAACTCACAAGCAAAATG  50

seq1  ATCTGGGGAAGTTTGCAGGGCTTTTGGCCTTACAATTCTTATCTATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGAAGTTTGCAGGGCTTTTGGCCTTACAATTCTTATCTATTAAT  100

seq1  GTAAGAATATTTTTCAGTGATATCTTGAAAAGGGTCTGGCCCACTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATATTTTTCAGTGATATCTTGAAAAGGGTCTGGCCCACTCTTAA  150

seq1  TACTGAAATTACTGTTAATAAAAATTTCAGCTGCTTATTTGTTCAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAATTACTGTTAATAAAAATTTCAGCTGCTTATTTGTTCAAACTT  200

seq1  ACTTGCTTGCTTATAATTTTTAAAAGTACTGTACTATATACTTCTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTGCTTATAATTTTTAAAAGTACTGTACTATATACTTCTTCTGG  250

seq1  TCAACAAAACATCTGGAGAGGTATATTTTTTCAATTTGTTACGTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAACATCTGGAGAGGTATATTTTTTCAATTTGTTACGTCTTTGT  300

seq1  ATTTGTAATAAGTCAAGCCCTGACCTACAGGTAGCTCTGTATGCGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAATAAGTCAAGCCCTGACCTACAGGTAGCTCTGTATGCGTACTG  350

seq1  CCATTTATCATGTCAGATTAAAGCAAAATTTACTGTGTTTTCTTTACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATCATGTCAGATTAAAGCAAAATTTACTGTGTTTTCTTTACTCT  400

seq1  ACTTTAACTACGTATACTCTTACTACTGAATTCTATCTGAGCCAAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACTACGTATACTCTTACTACTGAATTCTATCTGAGCCAAAAAGG  450

seq1  AATCAGTCAGAGTTGATGTTTGAAGCTTTCTGTATTCATGAAGTTAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCAGAGTTGATGTTTGAAGCTTTCTGTATTCATGAAGTTAGGGA  500

seq1  AAATATGTGTCTTGAGATAAAAACACAGCTGAGGTTTGGTTACGGCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGTCTTGAGATAAAAACACAGCTGAGGTTTGGTTACGGCTAGC  550

seq1  TGCCTGGAATCTAAACTCTCTGTTAAGTAGTTAAATAAGCCCAACATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAATCTAAACTCTCTGTTAAGTAGTTAAATAAGCCCAACATCTG  600

seq1  GCTGGCCCTTTATTATTCATTCTGCTTCCTAGGGGGAAATATTGCAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCTTTATTATTCATTCTGCTTCCTAGGGGGAAATATTGCAAATG  650

seq1  AGAAAGCATATGTTGACTTGGGATCATTTCAATAAAAACTCTTTCTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATATGTTGACTTGGGATCATTTCAATAAAAACTCTTTCTTATG  700

seq1  CAAATATTTATCTTAAAATCCTAAAAACTACTAATGAAGGCAAACATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTATCTTAAAATCCTAAAAACTACTAATGAAGGCAAACATTTT  750

seq1  TGAATAGACAATGGAATACTGTTGACACTGGGAATGTGGGATGTGGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGACAATGGAATACTGTTGACACTGGGAATGTGGGATGTGGAGAG  800

seq1  AGCTAAATTTTCAAGGATAAACCGAGATTCCCCTTTGGGGATACTTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATTTTCAAGGATAAACCGAGATTCCCCTTTGGGGATACTTAAGA  850

seq1  GAGTTGCTTATGTTTTTTTGAGTCTTACTAAAGTAAATATATATTGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTTATGTTTTTTTGAGTCTTACTAAAGTAAATATATATTGTTTA  900

seq1  CAAACATGAAAAAGAAACAACAGCAAACACAAAATTATGTAAAGATTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGAAAAAGAAACAACAGCAAACACAAAATTATGTAAAGATTCAA  950

seq1  ATAGATAATTTTATTGTAGCTATAGGAAGGCAGCAATTTTTGCTGAATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGATAATTTTATTGTAGCTATAGGAAGGCAGCAATTTTTGCTGAA-TT  999

seq1  TACTTTCCACAATTATCTTGTTGACTCTAACAGAAGCCATGAAATAAGTA  1050
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  TACTTTCCACAATTATCTTG-TGACTCTAACAGAAGCCATGAAATTAGTA  1048

seq1  CTGTTTTCTTAATTTGTGGGG-AGAAAA--TTGAACCTAAGGACTACTAC  1097
      |||||||  | |||||||||| ||||||  | ||||||||| ||||||||
seq2  CTGTTTTTCTTATTTGTGGGGAAGAAAAATTGGAACCTAAGAACTACTAC  1098

seq1  ACAG-CTAAAGTAGCCTTATGAAGTTTGGTTTGTGCTGTTTTTC-ATGGT  1145
       ||| ||||||||||| |||||   ||| ||  ||||||||| | | |||
seq2  -CAGCCTAAAGTAGCC-TATGA--GTTGATTGTTGCTGTTTTCCTAGGGT  1144

seq1  CCTTG-CTAGAA-TGTAG-TTTCTAAAAG  1171
      ||||| |||||| ||||| || |||||||
seq2  CCTTGCCTAGAACTGTAGCTTCCTAAAAG  1173


seq1: chr18_6652731_6653425
seq2: B6Ng01-253M24.g_142_386 (reverse)

seq1  GTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTG  50
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTATGTATACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTG  50

seq1  GGGAGTCTGGTT-GTTGATATTGT---CTTTCAGACAGAGTTGCAAACCC  96
      | |  ||| ||| ||| | |||||      ||  |  | | | |||||||
seq2  GTGGTTCTCGTTGGTTCACATTGTTGGTCCTCCTATGGGGCTACAAACCC  100

seq1  CTTCACCTCCTTCAGTCCTTTCTCCAACTCCTCTATTGGGGACCCTGTAC  146
      ||||| ||||||  ||| || ||| | || ||  |||||||| || || |
seq2  CTTCAGCTCCTTGGGTCTTTCCTCTAGCTTCTGCATTGGGGATCCCGTGC  150

seq1  TCAGTGCAATTGTTTGATGCAAGCATCCGACTCTGTATTTGTAAGGCTCT  196
      ||||| || | ||| | ||  ||||||   |||||||||||| |||||||
seq2  TCAGTCCAGTGGTTGGCTGTGAGCATCTACCTCTGTATTTGTCAGGCTCT  200

seq1  -GAGAAGCCTCTCAGGAGACAGCTATATCAGGCTCCTTTCAGCAAAATAT  245
       |  |||||||||| |||| |||||||| |||||||| ||||||||    
seq2  GGCAAAGCCTCTCA-GAGATAGCTATATGAGGCTCCTGTCAGCAAA----  245

seq1  TTCTTTTTTTTTTTAATTAGATATTTTCTTCTTTCTTATTAGATATTTTC  295
                                                        
seq2  --------------------------------------------------  245

seq1  TTTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTATATCCTCCCCCT  345
                                                        
seq2  --------------------------------------------------  245

seq1  GCCCTGCTCCCCTACCCACTCACTCCCACTTCTTGGCCCTGGTGTTCCCC  395
                                                        
seq2  --------------------------------------------------  245

seq1  TGTACTGAGGCATATAAAGTTTGCAAGACCAAGAGGCCTCTCTTCCAAAT  445
                                                        
seq2  --------------------------------------------------  245

seq1  GATGGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACATGAGC  495
                                                        
seq2  --------------------------------------------------  245

seq1  TCTGGGGGTACTGGTTAGTTCATATTTTTGTTCCACCAATAGGGTTGCAG  545
                                                        
seq2  --------------------------------------------------  245

seq1  ATCCCTTCAGCTCCTTGGGTAATTTTTCTAGCTCCTCCACTGGGGGCCCT  595
                                                        
seq2  --------------------------------------------------  245

seq1  GTGTTCCATCCTATAGATGACTGTGAGCGTCTACTTCTGTATTTGCCAGG  645
                                                        
seq2  --------------------------------------------------  245

seq1  CACTGGCATACCCTCACTTGAGATAGCTATATCAGGGTCCTTTCAGCAAA  695
                                                        
seq2  --------------------------------------------------  245


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