BAC Information

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BAC

Clone NameB6Ng01-253N06
Chromosome5 (Build37)
Map Location 135,435,980 - 135,573,076
singlet/doubletdoublet
Overlap geneCldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d
Upstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4
Downstream geneMlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253N06.bB6Ng01-253N06.g
ACCGA060454GA060455
length1,000164
definitionB6Ng01-253N06.b B6Ng01-253N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,435,980 - 135,436,977)(135,572,913 - 135,573,076)
sequence
gaattcttcttaccagcacaccttgttgttgttttaagatttatttattt
tattttatatgagtgcactgtagctgtcttcagacacaccagaagagggc
atcggatcccattacagatggttgtgagctaccatgtggttgtgggaata
gaactcaggacctcttggagagcaatcagtgctcttaatcgctgagccat
ctctccagccctacaccttattttttgaagcagggtctctccctttgacc
tgggactccctgattcagctgagggagccccgtggatctatttgtcttgt
cttccctgcacatgttataaacaggagccatcaagtccagcaggggttct
ggggatcccaacttgggccctcacatttgtgcaacaaataccttatcagc
tgagccatcagctgagccctctcctttgccacctgcacctcaggaagctc
tggcttcctgctggctctcagctctgcatcaacccaggcccaagaaaggg
cacagcccactgtgatctactgcatcccctggagacggagtggagcagag
ccaagagcagccaagcttgtggttagttttgaactctttaattattcaat
gttctttttataccagggcttaagcaacagggctgggatgtttggaggcc
tcctaagtgttccacagttccaccttcctgcctttcctcacatcctccct
tcatttgcacacgcccctgcttctttgcatacaagacccacggagatggc
cagctgccttggagctgtctctgcctcgctggatcccacacctaggtggc
actgggacttggcctctgcctttctctctgtctttttccctcctcccccc
ttttgcctgcctgccttcctttctgtagggccctgacccaggactttctg
cattattaggcaggccgctctaccactgagccacactcccaactccttgg
tggagggtttttttttttttctggttgtttgcaagggtcttagcttttgc

tggatctttccctctcctcttccccagtgccaggatcgtgccagcaccac
tacaccgacacccatgcaatgtcagtgatggaaggcaagcactttatgca
ctgagccctactgtagagttagttgggttttttgttgttgctggtggtgt
tggtggtggtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135435980_135436977
seq2: B6Ng01-253N06.b_44_1043

seq1  GAATTCTTCTTACCAGCACACCTTGTTGTTGTTTTAAGATTTATTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTACCAGCACACCTTGTTGTTGTTTTAAGATTTATTTATTT  50

seq1  TATTTTATATGAGTGCACTGTAGCTGTCTTCAGACACACCAGAAGAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATGAGTGCACTGTAGCTGTCTTCAGACACACCAGAAGAGGGC  100

seq1  ATCGGATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGTGGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGTGGGAATA  150

seq1  GAACTCAGGACCTCTTGGAGAGCAATCAGTGCTCTTAATCGCTGAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGACCTCTTGGAGAGCAATCAGTGCTCTTAATCGCTGAGCCAT  200

seq1  CTCTCCAGCCCTACACCTTATTTTTTGAAGCAGGGTCTCTCCCTTTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCTACACCTTATTTTTTGAAGCAGGGTCTCTCCCTTTGACC  250

seq1  TGGGACTCCCTGATTCAGCTGAGGGAGCCCCGTGGATCTATTTGTCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCCCTGATTCAGCTGAGGGAGCCCCGTGGATCTATTTGTCTTGT  300

seq1  CTTCCCTGCACATGTTATAAACAGGAGCCATCAAGTCCAGCAGGGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGCACATGTTATAAACAGGAGCCATCAAGTCCAGCAGGGGTTCT  350

seq1  GGGGATCCCAACTTGGGCCCTCACATTTGTGCAACAAATACCTTATCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCCCAACTTGGGCCCTCACATTTGTGCAACAAATACCTTATCAGC  400

seq1  TGAGCCATCAGCTGAGCCCTCTCCTTTGCCACCTGCACCTCAGGAAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCAGCTGAGCCCTCTCCTTTGCCACCTGCACCTCAGGAAGCTC  450

seq1  TGGCTTCCTGCTGGCTCTCAGCTCTGCATCAACCCAGGCCCAAGAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCTGCTGGCTCTCAGCTCTGCATCAACCCAGGCCCAAGAAAGGG  500

seq1  CACAGCCCACTGTGATCTACTGCATCCCCTGGAGACGGAGTGGAGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCACTGTGATCTACTGCATCCCCTGGAGACGGAGTGGAGCAGAG  550

seq1  CCAAGAGCAGCCAAGCTTGTGGTTAGTTTTGAACTCTTTAATTATTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCAGCCAAGCTTGTGGTTAGTTTTGAACTCTTTAATTATTCAAT  600

seq1  GTTCTTTTTATACCAGGGCTTAAGCAACAGGGCTGGGATGTTTGGAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTATACCAGGGCTTAAGCAACAGGGCTGGGATGTTTGGAGGCC  650

seq1  TCCTAAGTGTTCCACAGTTCCACCTTCCTGCCTTTCCTCACATCCTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTGTTCCACAGTTCCACCTTCCTGCCTTTCCTCACATCCTCCCT  700

seq1  TCATTTGCACACGCCCCTGCTTCTTTGCATACAAGACCCACGGAGATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCACACGCCCCTGCTTCTTTGCATACAAGACCCACGGAGATGGC  750

seq1  CAGCTGCCTTGGAGCTGTCTCTGCCTCGCTGGATCCCACACCTAGGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTTGGAGCTGTCTCTGCCTCGCTGGATCCCACACCTAGGTGGC  800

seq1  ACTGGGACTTGGCCTCTGCCTTTCTCTCTGTCTTTTTCCCTCCTCCCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGACTTGGCCTCTGCCTTTCTCTCTGTCTTTTTCCCTCCTCCCCCC  850

seq1  TTTTGCCTGCCTGCCTTCCTTTCTGTAGGGCCCTGACCCAGGACTTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTGCCTGCCTTCCTTTCTGTAGGGCCCTGACCCAGGACTTTCTG  900

seq1  CA-TATTAGGCAGG-CGCTCTACCACTGAGCCACACTCCCAACTCCTT-G  947
      || ||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CATTATTAGGCAGGCCGCTCTACCACTGAGCCACACTCCCAACTCCTTGG  950

seq1  TTGAGGGTTTTTTTTTTTTTTCTGTTGTTTGCTAGGGTCTTTAGCTTTTG  997
      | ||||||||||||||||||   ||||||||| |||||| ||||||||||
seq2  TGGAGGGTTTTTTTTTTTTTCTGGTTGTTTGCAAGGGTC-TTAGCTTTTG  999

seq1  C  998
      |
seq2  C  1000

seq1: chr5_135572913_135573076
seq2: B6Ng01-253N06.g_73_236 (reverse)

seq1  CATCACCACCACCAACACCACCAGCAACAACAAAAAACCCAACTAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCACCACCAACACCACCAGCAACAACAAAAAACCCAACTAACTCT  50

seq1  ACAGTAGGGCTCAGTGCATAAAGTGCTTGCCTTCCATCACTGACATTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGGCTCAGTGCATAAAGTGCTTGCCTTCCATCACTGACATTGCA  100

seq1  TGGGTGTCGGTGTAGTGGTGCTGGCACGATCCTGGCACTGGGGAAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCGGTGTAGTGGTGCTGGCACGATCCTGGCACTGGGGAAGAGGA  150

seq1  GAGGGAAAGATCCA  164
      ||||||||||||||
seq2  GAGGGAAAGATCCA  164