BAC Information

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BAC

Clone NameB6Ng01-254H24
Chromosome5 (Build37)
Map Location 55,042,387 - 55,216,638
singlet/doubletdoublet
Overlap geneEG666377, LOC666380
Upstream geneRbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254H24.bB6Ng01-254H24.g
ACCGA060950GA060951
length1,0771,162
definitionB6Ng01-254H24.b B6Ng01-254H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,215,560 - 55,216,638)(55,042,387 - 55,043,523)
sequence
gaattccaatggatccaattccaatggatcagaagccttaaaccctgaaa
ttgtgtgaggaacaaagtagaaaaagcacttcaaaacacagagagaggca
cagattttctgaacaggaatttaattgctcaggaaaggggaaaaaaaccc
tgtttgcatctagggaatgctcttattttatttagatgaatcaagtactt
atgactatgagagaacttagaagtcatataatgtctaatttattttataa
atgaattaaggaaagatattatttaagctattagtgtttctccctactca
gattttgggtaatgtttagcataatgattttggtttctatcttttagttg
gtgaatagatccagaccagataatatcatttctgcatcagcaattaactc
ctcacaatgtcgtgaatagggtaacttatttattaagccttaaaaaatat
aattaggtcattctctctcattttcccaaatatatatatactaaacagaa
taaacaaaagcaatgagggcaaagatattgacaggagagacgatctactc
ctagaaaagccaaatctaggagtgaagccaagtttatgtaaagcatgatt
taacaactcacatgatgatgccaaaaatccacttttcttccttcatctct
ctgtgaagcacgtcttctgtcttactaatcccctagctgtgatgactgta
tcaattaatcacaaccctttaataaaccaccacaaaactaagtggcttta
aaggcgatgattagttatttctcagaataatgtgggctggctaagatttc
tctcctatcctcatttactgtgtagcgtgatgaagtatagagccaccaca
gctggaaaggacaaggtagcctgagtcctccacctgatatctgaagctaa
ctgttgtcttaagcatcactgactactttctattatgtatcatcctccag
ctgtccagaaaaactttcccatcatattccttaggcagaatttccaagag
tctgaagagaagctgccaaatattcaccttcagtgatgcacaggtgtcat
ttcttacattttcagtagctagaccac

gaattcagcagtgtttcttctgtttatattttgtggaataatttgaggaa
tattggtattagctcttttttgaaggtctggtagaatccttcattaaaac
cttctggcccaggacattttttggttgggagacttttaatcaccacttct
aaatataggtctatttagatcatctatatgatattgacttagctgtgtta
agtgctatctattaaggaaactgtccatttcacttaaatttcctaacttt
gaagtaatacttcattttgaatttccttgttgtctgctgttattccttct
tttcatttctgattttaataatttggagattgtctttatcctgtttattg
tatcaggataagagtttatctatgttgttgattttctcaatgaattgttt
tgtttctctattttttttttcttcatcagaatgtttattaaaaatataga
ctgtgcttaaatgtcattgtgggtgtatgctgacttccaaacagacttca
caaataacactttgaacagaagtggtaaacagaaatgactccccttagag
cctgacattattaaccactccatcaacactcacagggatggagttcatgg
gcctaaaggcaccatgaacacaagacatctttttgcacttcccaagtggc
tttatatttcagctatggaggtcagttctcaaagtcctacttgttctcaa
caagtagtttatatgtccgttttaatcagccttacacctttctgggccaa
ttcagctgcagacaggaggagaagccgtcaccaggtcttcatgccatgca
tccacctgactgcctgtcctcagatgctatccagctttctttaagatatt
atggaagtgacctcgcagcagggccacgtaaatgaggaagttccgaatgg
gaggagaaccacatcctccacgcatcttctggcttcatctcttcccgggt
ccaacttggggcgcgagaccctcgatccggaacatttgctggcggctctg
cttcaaagctttgctagagacagcaacttgcttcttcctcagtggcagcc
ctgcacccggaaacttcttctctatttttttttttttaattaatccggag
tttgatttactctggctgtcctactccccctcttggggggtggtttggcg
cttcctttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55215560_55216638
seq2: B6Ng01-254H24.b_47_1123 (reverse)

seq1  GTGGTTTTAGCTACTGAAAATGTAAGAAATGACA-CTGTGCATCACTGGA  49
      |||| | ||||||||||||||||||||||||||| |||||||||||| ||
seq2  GTGG-TCTAGCTACTGAAAATGTAAGAAATGACACCTGTGCATCACT-GA  48

seq1  GGGTGAATATTT-GCAGCTTCTCTTTTCAGACTCTTGG-AATTCTGCCTT  97
       ||||||||||| ||||||||||  ||||||||||||| |||||||||| 
seq2  AGGTGAATATTTGGCAGCTTCTC--TTCAGACTCTTGGAAATTCTGCCTA  96

seq1  AAGAATATGATGGGAAAGTTTTTCTGGACAGCTGGAGGATGATACATAAT  147
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATGATGGGAAAGTTTTTCTGGACAGCTGGAGGATGATACATAAT  146

seq1  AAGAAAGTAGTCAGTGATGCTTAAGACAACAGTTAGCTTCAGATATCAGG  197
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGAAAGTAGTCAGTGATGCTTAAGACAACAGTTAGCTTCAGATATCAGG  195

seq1  TGGAGGACTCAGGCTACCTTGTCCTTTCCAGCTGTGGTGGCTCTATACTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACTCAGGCTACCTTGTCCTTTCCAGCTGTGGTGGCTCTATACTT  245

seq1  CATCACGCTACACAGTAAATGAGGATAGGAGAGAAATCTTAGCCAGCCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACGCTACACAGTAAATGAGGATAGGAGAGAAATCTTAGCCAGCCCA  295

seq1  CATTATTCTGAGAAATAACTAATCATCGCCTTTAAAGCCACTTAGTTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTGAGAAATAACTAATCATCGCCTTTAAAGCCACTTAGTTTTG  345

seq1  TGGTGGTTTATTAAAGGGTTGTGATTAATTGATACAGTCATCACAGCTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTTATTAAAGGGTTGTGATTAATTGATACAGTCATCACAGCTAG  395

seq1  GGGATTAGTAAGACAGAAGACGTGCTTCACAGAGAGATGAAGGAAGAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAGTAAGACAGAAGACGTGCTTCACAGAGAGATGAAGGAAGAAAA  445

seq1  GTGGATTTTTGGCATCATCATGTGAGTTGTTAAATCATGCTTTACATAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTTTGGCATCATCATGTGAGTTGTTAAATCATGCTTTACATAAA  495

seq1  CTTGGCTTCACTCCTAGATTTGGCTTTTCTAGGAGTAGATCGTCTCTCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTCACTCCTAGATTTGGCTTTTCTAGGAGTAGATCGTCTCTCCT  545

seq1  GTCAATATCTTTGCCCTCATTGCTTTTGTTTATTCTGTTTAGTATATATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATATCTTTGCCCTCATTGCTTTTGTTTATTCTGTTTAGTATATATA  595

seq1  TATTTGGGAAAATGAGAGAGAATGACCTAATTATATTTTTTAAGGCTTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGAAAATGAGAGAGAATGACCTAATTATATTTTTTAAGGCTTAA  645

seq1  TAAATAAGTTACCCTATTCACGACATTGTGAGGAGTTAATTGCTGATGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTTACCCTATTCACGACATTGTGAGGAGTTAATTGCTGATGCA  695

seq1  GAAATGATATTATCTGGTCTGGATCTATTCACCAACTAAAAGATAGAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATATTATCTGGTCTGGATCTATTCACCAACTAAAAGATAGAAAC  745

seq1  CAAAATCATTATGCTAAACATTACCCAAAATCTGAGTAGGGAGAAACACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATTATGCTAAACATTACCCAAAATCTGAGTAGGGAGAAACACT  795

seq1  AATAGCTTAAATAATATCTTTCCTTAATTCATTTATAAAATAAATTAGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTAAATAATATCTTTCCTTAATTCATTTATAAAATAAATTAGAC  845

seq1  ATTATATGACTTCTAAGTTCTCTCATAGTCATAAGTACTTGATTCATCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGACTTCTAAGTTCTCTCATAGTCATAAGTACTTGATTCATCTA  895

seq1  AATAAAATAAGAGCATTCCCTAGATGCAAACAGGGTTTTTTTCCCCTTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAGAGCATTCCCTAGATGCAAACAGGGTTTTTTTCCCCTTTC  945

seq1  CTGAGCAATTAAATTCCTGTTCAGAAAATCTGTGCCTCTCTCTGTGTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAATTAAATTCCTGTTCAGAAAATCTGTGCCTCTCTCTGTGTTTT  995

seq1  GAAGTGCTTTTTCTACTTTGTTCCTCACACAATTTCAGGGTTTAAGGCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTTTTTCTACTTTGTTCCTCACACAATTTCAGGGTTTAAGGCTT  1045

seq1  CTGATCCATTGGAATTGGATCCATTGGAATTC  1079
      ||||||||||||||||||||||||||||||||
seq2  CTGATCCATTGGAATTGGATCCATTGGAATTC  1077


seq1: chr5_55042387_55043523
seq2: B6Ng01-254H24.g_68_1229

seq1  GAATTCAGCAGTGTTTCTTCTGTTTATATTTTGTGGAATAATTTGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGTGTTTCTTCTGTTTATATTTTGTGGAATAATTTGAGGAA  50

seq1  TATTGGTATTAGCTCTTTTTTGAAGGTCTGGTAGAATCCTTCATTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTATTAGCTCTTTTTTGAAGGTCTGGTAGAATCCTTCATTAAAAC  100

seq1  CTTCTGGCCCAGGACATTTTTTGGTTGGGAGACTTTTAATCACCACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCCCAGGACATTTTTTGGTTGGGAGACTTTTAATCACCACTTCT  150

seq1  AAATATAGGTCTATTTAGATCATCTATATGATATTGACTTAGCTGTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGGTCTATTTAGATCATCTATATGATATTGACTTAGCTGTGTTA  200

seq1  AGTGCTATCTATTAAGGAAACTGTCCATTTCACTTAAATTTCCTAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATCTATTAAGGAAACTGTCCATTTCACTTAAATTTCCTAACTTT  250

seq1  GAAGTAATACTTCATTTTGAATTTCCTTGTTGTCTGCTGTTATTCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATACTTCATTTTGAATTTCCTTGTTGTCTGCTGTTATTCCTTCT  300

seq1  TTTCATTTCTGATTTTAATAATTTGGAGATTGTCTTTATCCTGTTTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTGATTTTAATAATTTGGAGATTGTCTTTATCCTGTTTATTG  350

seq1  TATCAGGATAAGAGTTTATCTATGTTGTTGATTTTCTCAATGAATTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGATAAGAGTTTATCTATGTTGTTGATTTTCTCAATGAATTGTTT  400

seq1  TGTTTCTCTATTTTTTTTTTCTTCATCAGAATGTTTATTAAAAATATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTATTTTTTTTTTCTTCATCAGAATGTTTATTAAAAATATAGA  450

seq1  CTGTGCTTAAATGTCATTGTGGGTGTATGCTGACTTCCAAACAGACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTAAATGTCATTGTGGGTGTATGCTGACTTCCAAACAGACTTCA  500

seq1  CAAATAACACTTTGAACAGAAGTGGTAAACAGAAATGACTCCCCTTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACACTTTGAACAGAAGTGGTAAACAGAAATGACTCCCCTTAGAG  550

seq1  CCTGACATTATTAACCACTCCATCAACACTCACAGGGATGGAGTTCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATTATTAACCACTCCATCAACACTCACAGGGATGGAGTTCATGG  600

seq1  GCCTAAAGGCACCATGAACACAAGACATCTTTTTGCACTTCCCAAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGGCACCATGAACACAAGACATCTTTTTGCACTTCCCAAGTGGC  650

seq1  TTTATATTTCAGCTATGGAGGTCAGTTCTCAAAGTCCTACTTGTTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTCAGCTATGGAGGTCAGTTCTCAAAGTCCTACTTGTTCTCAA  700

seq1  CAAGTAGTTTATATGTCCG-TTTAATCAGCCTTACACCTTTCTGGGCCAA  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAGTAGTTTATATGTCCGTTTTAATCAGCCTTACACCTTTCTGGGCCAA  750

seq1  TTCAGCTGCAGACAGGAGGAGAAGCCGTCACCAGGTCTTCATGCCATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGCAGACAGGAGGAGAAGCCGTCACCAGGTCTTCATGCCATGCA  800

seq1  TCCACCTGACTGCCTGTCCTCAGATGCTATCCAGC-TTCTTTAAGATA-T  847
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TCCACCTGACTGCCTGTCCTCAGATGCTATCCAGCTTTCTTTAAGATATT  850

seq1  ATGG-AGTGA-CTCGCAGCAGGGCCACGTAGATGAGGAAGTTCCGAAT-G  894
      |||| ||||| ||||||||||||||||||| ||||||||||||||||| |
seq2  ATGGAAGTGACCTCGCAGCAGGGCCACGTAAATGAGGAAGTTCCGAATGG  900

seq1  GAGGAG-ACCACATCCT-CACGCATCTTCT-GCTTCATCTCTT-CCGGGT  940
      |||||| |||||||||| |||||||||||| |||||||||||| ||||||
seq2  GAGGAGAACCACATCCTCCACGCATCTTCTGGCTTCATCTCTTCCCGGGT  950

seq1  CCAACTT-GGGCGCGAGACCCTCGATCCGGAACA-TTGC-GGCGGCTCTG  987
      ||||||| |||||||||||||||||||||||||| |||| ||||||||||
seq2  CCAACTTGGGGCGCGAGACCCTCGATCCGGAACATTTGCTGGCGGCTCTG  1000

seq1  CCTCCAAAGC-TTGCTAGAG-CAGCAACTTGC-TCTCCTCCAGTGGCAGC  1034
       || |||||| ||||||||| ||||||||||| ||| |  ||||||||||
seq2  -CTTCAAAGCTTTGCTAGAGACAGCAACTTGCTTCTTCCTCAGTGGCAGC  1049

seq1  CCTGCACCCGG-AACTTC-TCTCTATTTTTTTTTTTTTATTTCAATCCGG  1082
      ||||||||||| |||||| |||||||||||||||||||| || |||||||
seq2  CCTGCACCCGGAAACTTCTTCTCTATTTTTTTTTTTTTAATT-AATCCGG  1098

seq1  AGTTTGATTAATTCTTGCTGT-CTACT---CCTCTTGGGTG--TGTTT--  1124
      ||||||||| | ||| ||||| |||||   ||||||||| |   ||||  
seq2  AGTTTGATTTACTCTGGCTGTCCTACTCCCCCTCTTGGGGGGTGGTTTGG  1148

seq1  -GCTTCCTTTGGTT  1137
       |||||||||||||
seq2  CGCTTCCTTTGGTT  1162


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