BAC Information

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BAC

Clone NameB6Ng01-254K10
Chromosome12 (Build37)5 (Build37)
Map Location 115,490,303 - 115,490,55871,471,727 - 71,472,489
singlet/doubletsingletsinglet
Overlap geneIgh
Upstream geneIgh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4
Downstream geneEG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254K10.bB6Ng01-254K10.g
ACCGA061064GA061065
length1,032764
definitionB6Ng01-254K10.b B6Ng01-254K10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,490,303 - 115,490,558)(71,471,727 - 71,472,489)
sequence
gaattccaagcttctgggctaatatccacttatcagtgagtgtataccac
gtgtgttcttttgtgactgggttacctcactcaggctgacattttctagt
tccatccatttgtctcagatttcatgaagtcattgttttaatagctgagt
agttttccattgtgtaaaggtaccacattttcttttgtttttaatataat
ttttattagatattttctttatgtacatttcaaatgctaccccaaaagtt
ccctacaccctccccttaccctgcccccttatcgatccactctcaccttc
ttggccctggtgttccactgtactggggcatataaagtattcaagatcaa
ggggcatctcttcccagtgatggccgactaggccatcttctgctacatat
gcagctagagtcacgagctctatatccattcctccgttgatggacagccg
agttctttccagcttttggctattataaataaggctgctatgaacatagt
ggagcatgagtatttattacatgttggaatatcttctgggtatattccca
ggactggtatagctgggtcctcaggtagtactatgtccaactttctgagg
aaccatcaaactgatttccccagtggctgtactagcttacaattgcacta
gcaatggaggaggattcctttttctccacatcctcaccagcatctgctgt
cacctgagttgttgaccttagccattctgactagtttgaagtggaagctc
agggttgttttgatttgcatttccctgatgactaaggatgttgaacattt
ttttaggtacatatcagggcatgcattattcctcatttgagaattctttg
tttagctctgtaccccatttttaatagggttatttgggttctctggagtc
taacttcttgacttctttgtatatattggtaattagccctctatcagatg
tagctattggttacagatctttatcctaatctgttggttattgttttgtc
ttatggcaggtgtcctttcccttacagaaggc
gaattcatttctgttactgtaattacataaaggaactcttcagattccca
agaaatgaaacagtggactaaaatacccgacaggtttacaaggaagatta
aaatttgcatacccagaaaggaagtcttaattaaaagaaaatggaatttc
aaggttggtgtttcagtcaagtagaagggaatatgggagtgtagatttaa
ttacttatctagggcatgtaagggtgatcattgaagcaaaaaaaaatgta
aaactggggattctactggggagaacataaaaatgattacatgagtatgg
aaatatttggcatatttggaaactgcatggggcaagcttaggtggggatg
ggacaacaagagaatgagggtgaatgctttgtggtcacttccaaggagta
atgatggaaatattactaagagtatgatgtcacctgataagtcaaaatta
aaatgaggtattttttgattaccaggagcttttgacttagtacagtatcc
aggatggtaacatcaaaagtaactctgcataaaaggaaatatactggatc
aaaggaaatctgcataaataccacattattagtaatgcttatattaaact
atgtcaccactataaaaatgtgaacttaaagagaaacatcaagataattt
ttgagctctgtgtgtgtgtgtgtgcacataagtgaggaaatcaaacaatt
atcttgaatgtcattcctcagttgtcttccacattactgtgtgtgtgaga
gagagggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115490303_115490558
seq2: B6Ng01-254K10.b_61_552 (reverse)

seq1  CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAAAAGCTGG  50

seq1  AAAGAACCCAAGTGTCGCTCAACAGAGGAATGGAT---------------  85
      ||||||| |   ||||  ||||| |||||||||||               
seq2  AAAGAACTCGGCTGTCCATCAACGGAGGAATGGATATAGAGCTCGTGACT  100

seq1  --------------------------------------------------  85
                                                        
seq2  CTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGGCCATCACTGGGAAGA  150

seq1  --------------------------------------------------  85
                                                        
seq2  GATGCCCCTTGATCTTGAATACTTTATATGCCCCAGTACAGTGGAACACC  200

seq1  --------------------------------------------------  85
                                                        
seq2  AGGGCCAAGAAGGTGAGAGTGGATCGATAAGGGGGCAGGGTAAGGGGAGG  250

seq1  --------------------------------------------------  85
                                                        
seq2  GTGTAGGGAACTTTTGGGGTAGCATTTGAAATGTACATAAAGAAAATATC  300

seq1  -----------------------ACAGAAAATGTGGTACATTTACACAAT  112
                             | |||||||||||||| ||||||||||
seq2  TAATAAAAATTATATTAAAAACAAAAGAAAATGTGGTACCTTTACACAAT  350

seq1  GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTTCTAGGCA  162
      |||  |||||||||||||| |||| ||||| || ||||||| |  || ||
seq2  GGAAAACTACTCAGCTATT-AAAACAATGACTTCATGAAATCT-GAGACA  398

seq1  AATGAATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAA  212
      |||| ||||| || ||     ||| |||||||||||||||||| ||||||
seq2  AATGGATGGAACTAGAAAATGTCAGCCTGAGTGAGGTAACCCAGTCACAA  448

seq1  AAGAACTCACATGATATGTACTCATTGATAAGTGGATATTAGCC  256
      |||||| ||| || |||  ||||| |||||||||||||||||||
seq2  AAGAACACACGTGGTATACACTCACTGATAAGTGGATATTAGCC  492

seq1: chr5_71471727_71472489
seq2: B6Ng01-254K10.g_67_829 (reverse)

seq1  CCCCCCCCCTCTCTCTCACACACACAGTAATGTGGAAGACAACTGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCTCTCTCTCACACACACAGTAATGTGGAAGACAACTGAGGAA  50

seq1  TGACATTCAAGATAATTGTTTGATTTCCTCACTTATGTGCACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCAAGATAATTGTTTGATTTCCTCACTTATGTGCACACACACAC  100

seq1  ACACAGAGCTCAAAAATTATCTTGATGTTTCTCTTTAAGTTCACATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGCTCAAAAATTATCTTGATGTTTCTCTTTAAGTTCACATTTTT  150

seq1  ATAGTGGTGACATAGTTTAATATAAGCATTACTAATAATGTGGTATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGTGACATAGTTTAATATAAGCATTACTAATAATGTGGTATTTAT  200

seq1  GCAGATTTCCTTTGATCCAGTATATTTCCTTTTATGCAGAGTTACTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCCTTTGATCCAGTATATTTCCTTTTATGCAGAGTTACTTTTG  250

seq1  ATGTTACCATCCTGGATACTGTACTAAGTCAAAAGCTCCTGGTAATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCATCCTGGATACTGTACTAAGTCAAAAGCTCCTGGTAATCAAA  300

seq1  AAATACCTCATTTTAATTTTGACTTATCAGGTGACATCATACTCTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTCATTTTAATTTTGACTTATCAGGTGACATCATACTCTTAGTA  350

seq1  ATATTTCCATCATTACTCCTTGGAAGTGACCACAAAGCATTCACCCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCATCATTACTCCTTGGAAGTGACCACAAAGCATTCACCCTCAT  400

seq1  TCTCTTGTTGTCCCATCCCCACCTAAGCTTGCCCCATGCAGTTTCCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTTGTCCCATCCCCACCTAAGCTTGCCCCATGCAGTTTCCAAAT  450

seq1  ATGCCAAATATTTCCATACTCATGTAATCATTTTTATGTTCTCCCCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAATATTTCCATACTCATGTAATCATTTTTATGTTCTCCCCAGTA  500

seq1  GAATCCCCAGTTTTACATTTTTTTTTGCTTCAATGATCACCCTTACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCCAGTTTTACATTTTTTTTTGCTTCAATGATCACCCTTACATGC  550

seq1  CCTAGATAAGTAATTAAATCTACACTCCCATATTCCCTTCTACTTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATAAGTAATTAAATCTACACTCCCATATTCCCTTCTACTTGACTG  600

seq1  AAACACCAACCTTGAAATTCCATTTTCTTTTAATTAAGACTTCCTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAACCTTGAAATTCCATTTTCTTTTAATTAAGACTTCCTTTCTG  650

seq1  GGTATGCAAATTTTAATCTTCCTTGTAAACCTGTCGGGTATTTTAGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCAAATTTTAATCTTCCTTGTAAACCTGTCGGGTATTTTAGTCCA  700

seq1  CTGTTTCATTTCTTGGGAATCTGAAGAGTTCCTTTATGTAATTACAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCATTTCTTGGGAATCTGAAGAGTTCCTTTATGTAATTACAGTAA  750

seq1  CAGAAATGAATTC  763
      |||||||||||||
seq2  CAGAAATGAATTC  763