BAC Information

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BAC

Clone NameB6Ng01-254N22
Chromosome5 (Build37)
Map Location 99,079,494 - 99,080,493
singlet/doubletsinglet
Overlap gene1700007G11Rik
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254N22.bB6Ng01-254N22.g
ACCGA061224GA061225
length1,2161,026
definitionB6Ng01-254N22.b B6Ng01-254N22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatcatgtgtcctttcatgtgcttgctttagcagaacatcct
ttcacctgggcctgtttcagccaaatgttccttcacaagtctgcctcctt
aacctttcatccatgtccacttcatctagactttccttcacatgtttgcc
ccagcagaacaccatgcaaccagcttttcaaagaacccttatgttggtac
caccagccttatttttgctcatgtcacagttgctttagctatcactgatc
ttttgtatttccaaatgaattttaagatttattcttctgcttttctgaag
aatagaattagaattatttggcattacattgaatctgcaaagtgctttgg
gcgaggtaaccatttccatggcattatttctctgatattatgaactttct
agctccagtaacttcaatcctctttttagtgctttctaaatcttcacttc
tttggttaggtgtatttattttaaagtacttttgtttcattgttgaggct
attttgagtggaagttttcccatgatttccatgtgcattattgatatata
ggatggataagaagttttctgtgttgattttgtatactgccactctgatg
aaagtatttataggttctaatagttttctagtggatattctaggaactct
agagtctagatgtatacatttattactgatgtaatgttactgcctctgta
gataggttgaaattacttgtcttgatttaagtgtggtagagcatctgcat
ctataaattcattcatttcttttacattttccaattgaggggaatctata
ttttaaagtcatactcccaatgacctttctaaactttattcttatttgtt
acaatgtcacattcttaccactaattttagtgacttggacattctttcca
agaattctctttttggctgctttaactactgggtttgtcaatcttatgga
tcatttcaaatacagcattctttgtatgcttgattttttttccagggccc
ttttgagccaagagattggagtgcgatccagcagcagccactgaactttc
taccactgtggcattgtgggctttgctttgatgcattgtgaatatgctga
ttcttcctcttggaaaaagaaaaaacttaatttgttattctggttctcac
aagagagatctccaagctgaagaactaactcttagaagagggtgtacatc
ttttcacgagtagtct
gaattccaaacagcatctgctgtggtagccaagagaacagaccactcatt
ctgccagccatgttgtaagcagagcttgtcagagaaggaggcatttggac
ctgatatgccaggcacagtaatgctgtccaaagaacagtgaaacatagca
tattctcttgcagttcaaactctgtaagattccaatatagtctgttgaaa
ggaaaattaaagttcatatacttatctggaaaataatgttatacaatgat
aattaagaagaggtcatgagcttgagaggaagtgggggagacacaggagg
agatggatggagaggaggtagaaattatgtaaatgcagtacacacttata
gagttgtttaaaaacaacaaaaaattagttgattaaaacaaggtcattgg
ccagcttcctcgtctagctatctttagacatcatctacaacttaatggac
tgtaaagcaaaagagacttgtaacttcctttttaaaacaagcaggtaagg
gggacaattttattaagtacctactgcttcaagcttggcaagaattatgt
catttaatacatatatcatggtataggcattatcgtttgatgatagagaa
actgagagacagaaagcctgttgctagacttttactaaagataacaggct
cattggtggcctcattcgttttactgatgaataacacagtagcatataca
gtgtcttacaacagttcctctttatttatctaacaattctgtaggctgac
agtccagatgtgaaggagcccagctgctctcccaagcccagggcgtcttc
caagctgagaccaaggtgttgaccaagccgagccttgtgatcttcctgtt
ataaaacgtcaatgtctacaggccaggctctgactaagctcccagtgtcc
ttgaaaattggtcaacttaggggtggcttattaccaactagagaccaccc
cacactttggtttgttgtcttgacccccataatacaaatcaatttcatag
tgttttccttttctttccaaatttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99079494_99080493
seq2: B6Ng01-254N22.g_69_1076

seq1  GAATTCCAAACAGCATCTGCTGTGGTAGCCAAGAGAACAGACCACTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAGCATCTGCTGTGGTAGCCAAGAGAACAGACCACTCATT  50

seq1  CTGCCAGCCATGTTGTAAGCAGAGCTTGTCAGAGAAGGAGGCATTTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCCATGTTGTAAGCAGAGCTTGTCAGAGAAGGAGGCATTTGGAC  100

seq1  CTGATATGCCAGGCACAGTAATGCTGTCCAAAGAACAGTGAAACATAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGCCAGGCACAGTAATGCTGTCCAAAGAACAGTGAAACATAGCA  150

seq1  TATTCTCTTGCAGTTCAAACTCTGTAAGATTCCAATATAGTCTGTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTTGCAGTTCAAACTCTGTAAGATTCCAATATAGTCTGTTGAAA  200

seq1  GGAAAATTAAAGTTCATATACTTATCTGGAAAATAATGTTATACAATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTAAAGTTCATATACTTATCTGGAAAATAATGTTATACAATGAT  250

seq1  AATTAAGAAGAGGTCATGAGCTTGAGAGGAAGTGGGGGAGACACAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAGAGGTCATGAGCTTGAGAGGAAGTGGGGGAGACACAGGAGG  300

seq1  AGATGGATGGAGAGGAGGTAGAAATTATGTAAATGCAGTACACACTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATGGAGAGGAGGTAGAAATTATGTAAATGCAGTACACACTTATA  350

seq1  GAGTTGTTTAAAAACAACAAAAAATTAGTTGATTAAAACAAGGTCATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTTAAAAACAACAAAAAATTAGTTGATTAAAACAAGGTCATTGG  400

seq1  CCAGCTTCCTCGTCTAGCTATCTTTAGACATCATCTACAACTTAATGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTCGTCTAGCTATCTTTAGACATCATCTACAACTTAATGGAC  450

seq1  TGTAAAGCAAAAGAGACTTGTAACTTCCTTTTTAAAACAAGCAGGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGCAAAAGAGACTTGTAACTTCCTTTTTAAAACAAGCAGGTAAGG  500

seq1  GGGACAATTTTATTAAGTACCTACTGCTTCAAGCTTGGCAAGAATTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAATTTTATTAAGTACCTACTGCTTCAAGCTTGGCAAGAATTATGT  550

seq1  CATTTAATACATATATCATGGTATAGGCATTATCGTTTGATGATAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATACATATATCATGGTATAGGCATTATCGTTTGATGATAGAGAA  600

seq1  ACTGAGAGACAGAAAGCCTGTTGCTAGACTTTTACTAAAGATAACAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGACAGAAAGCCTGTTGCTAGACTTTTACTAAAGATAACAGGCT  650

seq1  CATTGGTGGCCTCATTCGTTTTACTGATGAATAACACAGTAGCATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGGCCTCATTCGTTTTACTGATGAATAACACAGTAGCATATACA  700

seq1  GTGTCTTACAACAGTTCCTCTTTATTTATCTAACAATTCTGTAGGCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTACAACAGTTCCTCTTTATTTATCTAACAATTCTGTAGGCTGAC  750

seq1  AGTCCAGATGTGAAGGAGCCCAGCTGCTCTCCCAAAGCCCAGGGCGTCTT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTCCAGATGTGAAGGAGCCCAGCTGCTCTCCC-AAGCCCAGGGCGTCTT  799

seq1  CCAAGCTGAGACCAAGGTGTTGACCAAGCCGAGCCTTGTGATCTTCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGAGACCAAGGTGTTGACCAAGCCGAGCCTTGTGATCTTCCTGT  849

seq1  TATAAAACGTCAATGTCTACAGGCCAAGCTCTGACTAAGCTCCCAGTGTC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATAAAACGTCAATGTCTACAGGCCAGGCTCTGACTAAGCTCCCAGTGTC  899

seq1  CTTGAAAATT-GTCAAC-TAGGGGTGGC-TATTACCAACTAGAGACCA-C  946
      |||||||||| |||||| |||||||||| ||||||||||||||||||| |
seq2  CTTGAAAATTGGTCAACTTAGGGGTGGCTTATTACCAACTAGAGACCACC  949

seq1  CCACACTT--GGTTGTTGTC-TGACCCCCAT-ATACAATTC-ATTTCATA  991
      ||||||||  | |||||||| |||||||||| |||||| || ||||||||
seq2  CCACACTTTGGTTTGTTGTCTTGACCCCCATAATACAAATCAATTTCATA  999

seq1  GTGTTTTCC  1000
      |||||||||
seq2  GTGTTTTCC  1008