BAC Information

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BAC

Clone NameB6Ng01-254O14
Chromosome5 (Build37)
Map Location 118,830,004 - 118,972,493
singlet/doubletdoublet
Overlap geneLOC665162
Upstream geneRfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
Downstream geneThrap2, LOC100039488, EG665194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254O14.bB6Ng01-254O14.g
ACCGA061254GA061255
length1,1211,098
definitionB6Ng01-254O14.b B6Ng01-254O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,971,398 - 118,972,493)(118,830,004 - 118,831,099)
sequence
gaattctctacaagagcaagagtgctcttaaccattgagctgtctctcag
cccctcccgcacaccgttttattctgttgtagtagcatgaagccagctta
ccagtttgacttctttatttttaattaacatctgttcatttatttactaa
tttttgagacagggcttcattatgtacctgagactgacctggaactcatt
ctccctgcctccgtctccacactgctgggatcacaggcatgtgcttccac
gccccgtgatttcttgttcctctttggacccaggacatctgacctcactg
tggggtgaaggtgtgcctgaaccccacaacagctctactctttgctttgg
aagacagccggacaacagatgactcagcccagctgtcttctaagacacgc
ctgtcaggtgtgtttaaagtcgggcaggggactggagagatggctatgta
ctttagagcatgttctgctcttgcagaggatccacattcagttcccagcg
cccaccatttaatttaatctgctcattaaaaaagacacccttccttgcaa
gcagtggaatgggaaggtccacctgatacagcaataggccagtggcccag
ggatctgctgtctccatcgcccagaagctgggattacagacagatgctgt
cacacattttttttttttatggtgatgagctcagacccttgtgtatgcat
ggcaagaactttaccaactgagccatctccttggattgtttgcctccttc
taccatgatatttgcagggactgcactcgggttgtcaggactgtgagaca
catgttttttatccactgacccaccctgacagggtcccacgtcatcgttt
ttgaggctttcaaagatgaacctcctttccacacaggccagcaagtcatc
ccaggtcacagatgtggaacaggcctacacaggcccaggacatctccttt
ctagggtgatgatcagtcatgctccccctccctcccccaccatccctctc
tgggtatttaactctttggctaacctgtccatcacccccaacggccttgc
tcatagaagttgcctggtgtagaccagggttattccctcaggacttagag
agagaatccaacttgcctctg
agaaccacacagagttctgtaatctccatatacatgctgtgccccccccc
ccacacacacacacatacacatgcacactaaaaggaaaaaaaaatcttgg
gcgggggaggagcctgaaaagagatagaaacataaggaaagcaaagggtt
gtcttatcttttcagtgtgtaagagggcaaaatgtcaccaggaagagaaa
cagtctccatgctacagcgtctcagaaatcagaggctggggacttctgat
aagggccatggatcccagtctgcaccactgatggcccctcacagctcctc
acgttgtccatgacatcagttttgtccctgacatcagtattgcccacggc
atagaactcccagggtaggaaaggactcaacagcagacagaactggaaac
cccagtctggcctgattcttagacccgtagagcttctactgggcagaggt
ttgtcctcagggtggcaccagggtgactccagcagtcgagtgctggagaa
ggtggcctgagaagctgagcttgcagaagtggctggaagaggaaccgtgg
ccccgcccacccacttaaaacaagaacaaaaacaaaaaccaaccaacaag
gtgacatccaggacagaaaccccttgtcctctacctgcgttagcctctgt
cacgcaataaataacaccttcgaggagggtggcccgagccaggcagtaag
tgataccgccgtcagtccaaccgtcctgttggaagaaacacactgtaatc
atgcctgagaaagacatttggcaaatgagttcccatttttcacattggat
ttgtgctgagcgtatcaatttcccgcgggccggccagcgttgggggatgt
gttaattgattgcccgcgttataataacaagccgtgacaggcgatcattc
atcaccgggccgctgaacgttccagcgacgccgggagagagggggcgcgg
ggagccgatggaaaggagggaaagcatcgcccctgagggccgggagaggt
acgccagggccgtaatctttcattattatttggtcttaactggcctgggt
cctcccccatcccaatccccaaaggagcctaaggggtttggggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_118971398_118972493
seq2: B6Ng01-254O14.b_47_1167 (reverse)

seq1  CAGAGGC-AGGTGGA---TCTCTCTAAGT-CTGAGG--ATAA-CCTGGTC  42
      ||||||| || ||||   ||||||||||| ||||||  |||| |||||||
seq2  CAGAGGCAAGTTGGATTCTCTCTCTAAGTCCTGAGGGAATAACCCTGGTC  50

seq1  TACAC--AGCAACTTCTA-GAGCAA-GCCGTT-GGGGTGATGGACAGGTT  87
      |||||   |||||||||| |||||| |||||| |||||||||||||||||
seq2  TACACCAGGCAACTTCTATGAGCAAGGCCGTTGGGGGTGATGGACAGGTT  100

seq1  AG-CAAAGAGTTAAATA-CCAGAGA-GGATGGT-GGGGAGGGAGGGGGAG  133
      || |||||||||||||| ||||||| ||||||| ||||||||||||||||
seq2  AGCCAAAGAGTTAAATACCCAGAGAGGGATGGTGGGGGAGGGAGGGGGAG  150

seq1  CATGACTGATCATCA-CCTAG-AAGGAGATGT-CTGGG-CTGTGTA-GCC  178
      ||||||||||||||| ||||| |||||||||| ||||| ||||||| |||
seq2  CATGACTGATCATCACCCTAGAAAGGAGATGTCCTGGGCCTGTGTAGGCC  200

seq1  TGTT-CACATCTGTGA-CTGGGATGACTTGCTGGCCTGTGTGGAAAGGAG  226
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTTCCACATCTGTGACCTGGGATGACTTGCTGGCCTGTGTGGAAAGGAG  250

seq1  GTTCATCTTTGAAAGCCTCAAAAACGATGACGTGGGA-CCTGTCAGGGTG  275
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTCATCTTTGAAAGCCTCAAAAACGATGACGTGGGACCCTGTCAGGGTG  300

seq1  GGTCAGTGGATAAAAAACATGTGTCTCACAGTCCTGACAACCCGAGTGCA  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGGATAAAAAACATGTGTCTCACAGTCCTGACAACCCGAGTGCA  350

seq1  GTCCCTGCAAATATCATGGTAGAAGGAGGCAAACAATCCAAGGAGATGGC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCAAATATCATGGTAGAAGGAGGCAAACAATCCAAGGAGATGGC  400

seq1  TCAGTTGGTAAAGTTCTTGCCATGCATACACAAGGGTCTGAGCTCATCAC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGTAAAGTTCTTGCCATGCATACACAAGGGTCTGAGCTCATCAC  450

seq1  CATAAAAAAAAAAAATGTGTGACAGCATCTGTCTGTAATCCCAGCTTCTG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAAAAAAAATGTGTGACAGCATCTGTCTGTAATCCCAGCTTCTG  500

seq1  GGCGATGGAGACAGCAGATCCCTGGGCCACTGGCCTATTGCTGTATCAGG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATGGAGACAGCAGATCCCTGGGCCACTGGCCTATTGCTGTATCAGG  550

seq1  TGGACCTTCCCATTCCACTGCTTGCAAGGAAGGGTGTCTTTTTTAATGAG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTCCCATTCCACTGCTTGCAAGGAAGGGTGTCTTTTTTAATGAG  600

seq1  CAGATTAAATTAAATGGTGGGCGCTGGGAACTGAATGTGGATCCTCTGCA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAAATTAAATGGTGGGCGCTGGGAACTGAATGTGGATCCTCTGCA  650

seq1  AGAGCAGAACATGCTCTAAAGTACATAGCCATCTCTCCAGTCCCCTGCCC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAACATGCTCTAAAGTACATAGCCATCTCTCCAGTCCCCTGCCC  700

seq1  GACTTTAAACACACCTGACAGGCGTGTCTTAGAAGACAGCTGGGCTGAGT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAACACACCTGACAGGCGTGTCTTAGAAGACAGCTGGGCTGAGT  750

seq1  CATCTGTTGTCCGGCTGTCTTCCAAAGCAAAGAGTAGAGCTGTTGTGGGG  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTGTCCGGCTGTCTTCCAAAGCAAAGAGTAGAGCTGTTGTGGGG  800

seq1  TTCAGGCACACCTTCACCCCACAGTGAGGTCAGATGTCCTGGGTCCAAAG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCACACCTTCACCCCACAGTGAGGTCAGATGTCCTGGGTCCAAAG  850

seq1  AGGAACAAGAAATCACGGGGCGTGGAAGCACATGCCTGTGATCCCAGCAG  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAGAAATCACGGGGCGTGGAAGCACATGCCTGTGATCCCAGCAG  900

seq1  TGTGGAGACGGAGGCAGGGAGAATGAGTTCCAGGTCAGTCTCAGGTACAT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGACGGAGGCAGGGAGAATGAGTTCCAGGTCAGTCTCAGGTACAT  950

seq1  AATGAAGCCCTGTCTCAAAAATTAGTAAATAAATGAACAGATGTTAATTA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCCCTGTCTCAAAAATTAGTAAATAAATGAACAGATGTTAATTA  1000

seq1  AAAATAAAGAAGTCAAACTGGTAAGCTGGCTTCATGCTACTACAACAGAA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAAGTCAAACTGGTAAGCTGGCTTCATGCTACTACAACAGAA  1050

seq1  TAAAACGGTGTGCGGGAGGGGCTGAGAGACAGCTCAATGGTTAAGAGCAC  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACGGTGTGCGGGAGGGGCTGAGAGACAGCTCAATGGTTAAGAGCAC  1100

seq1  TCTTGCTCTTGTAGAGAATTC  1096
      |||||||||||||||||||||
seq2  TCTTGCTCTTGTAGAGAATTC  1121

seq1: chr5_118830004_118831099
seq2: B6Ng01-254O14.g_80_1177

seq1  AGAACCACACAGAGTTCTGTAATCTCCATATACATGCTGTGCCCCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACACAGAGTTCTGTAATCTCCATATACATGCTGTGCCCCCCCCC  50

seq1  CCACACACACACACATACACATGCACACTAAAAGGAAAAAAAAATCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACACACATACACATGCACACTAAAAGGAAAAAAAAATCTTGG  100

seq1  GCGGGGGAGGAGCCTGAAAAGAGATAGAAACATAAGGAAAGCAAAGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGGAGGAGCCTGAAAAGAGATAGAAACATAAGGAAAGCAAAGGGTT  150

seq1  GTCTTATCTTTTCAGTGTGTAAGAGGGCAAAATGTCACCAGGAAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATCTTTTCAGTGTGTAAGAGGGCAAAATGTCACCAGGAAGAGAAA  200

seq1  CAGTCTCCATGCTACAGCGTCTCAGAAATCAGAGGCTGGGGACTTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCATGCTACAGCGTCTCAGAAATCAGAGGCTGGGGACTTCTGAT  250

seq1  AAGGGCCATGGATCCCAGTCTGCACCACTGATGGCCCCTCACAGCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCATGGATCCCAGTCTGCACCACTGATGGCCCCTCACAGCTCCTC  300

seq1  ACGTTGTCCATGACATCAGTTTTGTCCCTGACATCAGTATTGCCCACGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTCCATGACATCAGTTTTGTCCCTGACATCAGTATTGCCCACGGC  350

seq1  ATAGAACTCCCAGGGTAGGAAAGGACTCAACAGCAGACAGAACTGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACTCCCAGGGTAGGAAAGGACTCAACAGCAGACAGAACTGGAAAC  400

seq1  CCCAGTCTGGCCTGATTCTTAGACCCGTAGAGCTTCTACTGGGCAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTGGCCTGATTCTTAGACCCGTAGAGCTTCTACTGGGCAGAGGT  450

seq1  TTGTCCTCAGGGTGGCACCAGGGTGACTCCAGCAGTCGAGTGCTGGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCAGGGTGGCACCAGGGTGACTCCAGCAGTCGAGTGCTGGAGAA  500

seq1  GGTGGCCTGAGAAGCTGAGCTTGCAGAAGTGGCTGGAAGAGGAACCGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTGAGAAGCTGAGCTTGCAGAAGTGGCTGGAAGAGGAACCGTGG  550

seq1  CCCCGCCCACCCACTTAAAACAAGAACAAAAACAAAAACCAACCAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCACCCACTTAAAACAAGAACAAAAACAAAAACCAACCAACAAG  600

seq1  GTGACATCCAGGACAGAAACCCCTTGTCCTCTACCTGCGTTAGCCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCCAGGACAGAAACCCCTTGTCCTCTACCTGCGTTAGCCTCTGT  650

seq1  CACGCAATAAATAACACCTTCGAGGAGGGTGGCCCGAGCCAGGCAGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAATAAATAACACCTTCGAGGAGGGTGGCCCGAGCCAGGCAGTAAG  700

seq1  TGATACCGCCGTCAGTCCAACCGTCCTGTTGGAAGAAACACACTGTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCGCCGTCAGTCCAACCGTCCTGTTGGAAGAAACACACTGTAATC  750

seq1  ATGCCTGAGAAAGACATTTGGCAAATGAGTTCCCA-TTTTCACATTGGA-  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  ATGCCTGAGAAAGACATTTGGCAAATGAGTTCCCATTTTTCACATTGGAT  800

seq1  TTGTGCTGAGCGTATCAATTTCCCGCGGGCCGGCCAGCGTT-GGGGATGT  847
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTGCTGAGCGTATCAATTTCCCGCGGGCCGGCCAGCGTTGGGGGATGT  850

seq1  G-TAATTGATTGCCCGCGTTATAATAAACAAGCCGTGACAGGCGATCATT  896
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTAATTGATTGCCCGCGTTATAAT-AACAAGCCGTGACAGGCGATCATT  899

seq1  CATCA-CGGGCCGCTGAACGTTCCAGCGACGCCGGGAGAGAGGGGGCGC-  944
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCACCGGGCCGCTGAACGTTCCAGCGACGCCGGGAGAGAGGGGGCGCG  949

seq1  GGGAGCCGAGGGAAAGGAGGGGAAAGCAGCGCCCCGGAGGGCGGGGAGAG  994
      ||||||||| |||||||| ||||||||| |||||| |||||| |||||| 
seq2  GGGAGCCGATGGAAAGGA-GGGAAAGCATCGCCCCTGAGGGCCGGGAGA-  997

seq1  GGAACGCCAGGGCCGTAATTCTTTTCATTATCTAATTTGTTCTT-ACTGG  1043
      || ||||||||||||||||   ||||||||  | ||||| |||| |||||
seq2  GGTACGCCAGGGCCGTAAT--CTTTCATTA--TTATTTGGTCTTAACTGG  1043

seq1  CCTGGGTCCTCCCCCATCCC-ATCCCC-AAGGAGGCCTAGGGGTTGGGGG  1091
      |||||||||||||||||||| |||||| |||||| |  ||||||| ||||
seq2  CCTGGGTCCTCCCCCATCCCAATCCCCAAAGGAGCCTAAGGGGTTTGGGG  1093

seq1  AGGGG  1096
      | |||
seq2  AAGGG  1098