BAC Information

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BAC

Clone NameB6Ng01-255I04
Chromosome5 (Build37)
Map Location 96,634,425 - 96,769,191
singlet/doubletdoublet
Overlap geneMrpl1
Upstream geneLOC100041296, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255I04.bB6Ng01-255I04.g
ACCGA061700GA061701
length7331,076
definitionB6Ng01-255I04.b B6Ng01-255I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,768,461 - 96,769,191)(96,634,425 - 96,635,503)
sequence
gaattccaggcaagccaggtggacctggggaaagcctatctcacaaaagc
caaaacctgacaatataagggttagcggactaagtttaaagtacttttac
catctgtgttgtgtaggcctcggctttcaagaggtatcagagaaaggtaa
tcgggagcactgaaaaggagcatttccaagcagcctcctggatcattcgt
tacggaatgatacctttatagaattattgcgcactacagttcacatctgt
tttagagttctcaaattccactggttgtgtgtaaaatgttgatggaacaa
ttggcagcattgcacacaacgattacagtaaaggcaaaaatatctcagaa
taattgctgttacatgcagacaaaaagtaattctttttttctctataata
tacatatctttcttttttattggattttttaaatttacatttcaaatgct
atcccctttcccagtttccctccctcctggaaacaccctatcccatcctc
cctccccctgcttctatgagggtgtttctccactcactcacccattccca
cctccccgcccttgattcccctacactggggcatctatggagccttcaca
ggaccaaggacctctccttccattgatgcataacaaggccatcctctgct
ccatatgcagctggagccctgtgcactcctttgttgatggctgagtccct
gggagctcctgggggggggggggttctggttgg
gaattcagcctcaacacgaattaaaagaagtttcaaataactgggtctgg
aaagttttatctaagtgagagaggaaatttagaccagaaacagatgtagg
tgggtaggacaggaaggtttctctctccactgaagatggaagccatgaag
tacagactcagaaatgcaggactctacttaagcttattccttattaggcg
agtctatgcaaaacaatatgttttagaattaatgatagtgatgtagattt
tgtcccagcatttgggaggctgtggcgggaacacttctgccagtctgggc
aatgtagtaagtttcaggcctgcctgatgtgcagtgtagaaaccctttct
caaaaacacaaagacaaacaagcaaataaactgaaagaaataccgatttt
gttatttgctgtattctgggacctttgtactttaagtagaacctatgggc
tagccacattgtccgttcctagaaatcagcctctctgatcttgttaaaga
tttatctattaacctatgttttaatcagatttcctggtgacttaatcaga
ttttccggtgactttagtattcatacatcttgagaagtgtgggccaagaa
agaattggtttggtttagaggtctttaaaagctttttttactaggaaact
ttaaatagcatagtatagccatatgagaaccaagttaaaaattatcaagg
gtttgttgacctggttgactttaagattaacagcttgaaactaattattg
tgagagaatttacagcatgaaaatgtgcaagtgttacaaattcatttcct
ttgtactgtagaaccagttgttaagcttttcttagcctagcactgcacag
ttctgaatcccctagttcaatctgtaattaagccagactcctagagaacc
aaagaagctcctgcctcttggagagacaagataatatgagttctactatg
tcactcacggaactttccaactttatactgaaatgctatcattctgggta
gtaaaacgttaccatacctgatctgaaatggccataatatgggaaggcac
acgagcatgggtaataactaaaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96768461_96769191
seq2: B6Ng01-255I04.b_46_778 (reverse)

seq1  CCAACCAGA--CCCCCCCCCCCCAGGAGCTCCCAGGGACTCAGCCATCAA  48
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGAACCCCCCCCCCCCCAGGAGCTCCCAGGGACTCAGCCATCAA  50

seq1  CAAAGGAGTGCACAGGGCTCCAGCTGCATATGGAGCAGAGGATGGCCTTG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGTGCACAGGGCTCCAGCTGCATATGGAGCAGAGGATGGCCTTG  100

seq1  TTATGCATCAATGGAAGGAGAGGTCCTTGGTCCTGTGAAGGCTCCATAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATCAATGGAAGGAGAGGTCCTTGGTCCTGTGAAGGCTCCATAGA  150

seq1  TGCCCCAGTGTAGGGGAATCAAGGGCGGGGAGGTGGGAATGGGTGAGTGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTGTAGGGGAATCAAGGGCGGGGAGGTGGGAATGGGTGAGTGA  200

seq1  GTGGAGAAACACCCTCATAGAAGCAGGGGGAGGGAGGATGGGATAGGGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAACACCCTCATAGAAGCAGGGGGAGGGAGGATGGGATAGGGTG  250

seq1  TTTCCAGGAGGGAGGGAAACTGGGAAAGGGGATAGCATTTGAAATGTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGAGGGAGGGAAACTGGGAAAGGGGATAGCATTTGAAATGTAAA  300

seq1  TTTAAAAAATCCAATAAAAAAGAAAGATATGTATATTATAGAGAAAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATCCAATAAAAAAGAAAGATATGTATATTATAGAGAAAAAAA  350

seq1  GAATTACTTTTTGTCTGCATGTAACAGCAATTATTCTGAGATATTTTTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTTTTTGTCTGCATGTAACAGCAATTATTCTGAGATATTTTTGC  400

seq1  CTTTACTGTAATCGTTGTGTGCAATGCTGCCAATTGTTCCATCAACATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGTAATCGTTGTGTGCAATGCTGCCAATTGTTCCATCAACATTT  450

seq1  TACACACAACCAGTGGAATTTGAGAACTCTAAAACAGATGTGAACTGTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAACCAGTGGAATTTGAGAACTCTAAAACAGATGTGAACTGTAG  500

seq1  TGCGCAATAATTCTATAAAGGTATCATTCCGTAACGAATGATCCAGGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAATAATTCTATAAAGGTATCATTCCGTAACGAATGATCCAGGAGG  550

seq1  CTGCTTGGAAATGCTCCTTTTCAGTGCTCCCGATTACCTTTCTCTGATAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGAAATGCTCCTTTTCAGTGCTCCCGATTACCTTTCTCTGATAC  600

seq1  CTCTTGAAAGCCGAGGCCTACACAACACAGATGGTAAAAGTACTTTAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAAAGCCGAGGCCTACACAACACAGATGGTAAAAGTACTTTAAAC  650

seq1  TTAGTCCGCTAACCCTTATATTGTCAGGTTTTGGCTTTTGTGAGATAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCGCTAACCCTTATATTGTCAGGTTTTGGCTTTTGTGAGATAGGC  700

seq1  TTTCCCCAGGTCCACCTGGCTTGCCTGGAATTC  731
      |||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGGTCCACCTGGCTTGCCTGGAATTC  733

seq1: chr5_96634425_96635503
seq2: B6Ng01-255I04.g_66_1141

seq1  GAATTCAGCCTCAACACGAATTAAAAGAAGTTTCAAATAACTGGGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTCAACACGAATTAAAAGAAGTTTCAAATAACTGGGTCTGG  50

seq1  AAAGTTTTATCTAAGTGAGAGAGGAAATTTAGACCAGAAACAGATGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTATCTAAGTGAGAGAGGAAATTTAGACCAGAAACAGATGTAGG  100

seq1  TGGGTAGGACAGGAAGGTTTCTCTCTCCACTGAAGATGGAAGCCATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGACAGGAAGGTTTCTCTCTCCACTGAAGATGGAAGCCATGAAG  150

seq1  TACAGACTCAGAAATGCAGGACTCTACTTAAGCTTATTCCTTATTAGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTCAGAAATGCAGGACTCTACTTAAGCTTATTCCTTATTAGGCG  200

seq1  AGTCTATGCAAAACAATATGTTTTAGAATTAATGATAGTGATGTAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGCAAAACAATATGTTTTAGAATTAATGATAGTGATGTAGATTT  250

seq1  TGTCCCAGCATTTGGGAGGCTGTGGCGGGAACACTTCTGCCAGTCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGCATTTGGGAGGCTGTGGCGGGAACACTTCTGCCAGTCTGGGC  300

seq1  AATGTAGTAAGTTTCAGGCCTGCCTGATGTGCAGTGTAGAAACCCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAAGTTTCAGGCCTGCCTGATGTGCAGTGTAGAAACCCTTTCT  350

seq1  CAAAAACACAAAGACAAACAAGCAAATAAACTGAAAGAAATACCGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACACAAAGACAAACAAGCAAATAAACTGAAAGAAATACCGATTTT  400

seq1  GTTATTTGCTGTATTCTGGGACCTTTGTACTTTAAGTAGAACCTATGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGCTGTATTCTGGGACCTTTGTACTTTAAGTAGAACCTATGGGC  450

seq1  TAGCCACATTGTCCGTTCCTAGAAATCAGCCTCTCTGATCTTGTTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACATTGTCCGTTCCTAGAAATCAGCCTCTCTGATCTTGTTAAAGA  500

seq1  TTTATCTATTAACCTATGTTTTAATCAGATTTCCTGGTGACTTAATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATTAACCTATGTTTTAATCAGATTTCCTGGTGACTTAATCAGA  550

seq1  TTTTCCGGTGACTTTAGTATTCATACATCTTGAGAAGTGTGGGCCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGGTGACTTTAGTATTCATACATCTTGAGAAGTGTGGGCCAAGAA  600

seq1  AGAATTGGTTTGGTTTAGAGGTCTTTAAAAGCTTTTTTTACTAGGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGTTTGGTTTAGAGGTCTTTAAAAGCTTTTTTTACTAGGAAACT  650

seq1  TTAAATAGCATAGTATAGCCATATGAGAACCAAGTTAAAAATTATCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCATAGTATAGCCATATGAGAACCAAGTTAAAAATTATCAAGG  700

seq1  GTTTGTTGACCTGGTTGACTTTAAGATTAACAGCTTGAAACTAATTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGACCTGGTTGACTTTAAGATTAACAGCTTGAAACTAATTATTG  750

seq1  TGAGAGAATTTACAGCATGAAAATGTGCAAGTGTTACAAATTCATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATTTACAGCATGAAAATGTGCAAGTGTTACAAATTCATTTCCT  800

seq1  TTGTACTGTAGAACCAGTTGTTAAGCTTTTCTTAGCCTAGCACTGCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGTAGAACCAGTTGTTAAGCTTTTCTTAGCCTAGCACTGCACAG  850

seq1  TTCTGAATCCCCTAGTTCAATCTGTAATTAAGCCAGACTCCTAGAGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATCCCCTAGTTCAATCTGTAATTAAGCCAGACTCCTAGAGAACC  900

seq1  AAAGAAGCTCCTGCCTCT--GAGAGACAAGATAATATGAGTTCTACTATG  948
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AAAGAAGCTCCTGCCTCTTGGAGAGACAAGATAATATGAGTTCTACTATG  950

seq1  TCACTCACGGAAC-TTCCAACTTTTATACTGAAATGCTATCATTCTGGGT  997
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  TCACTCACGGAACTTTCCAAC-TTTATACTGAAATGCTATCATTCTGGGT  999

seq1  AGTAAAAACGTTAACCATAACCTGATTCTGAAATGGCCATAATATGGGAA  1047
      ||| |||||||| ||||| |||||| ||||||||||||||||||||||||
seq2  AGT-AAAACGTT-ACCAT-ACCTGA-TCTGAAATGGCCATAATATGGGAA  1045

seq1  GGCAACACGAGCATTGGTAATACTTAAAATCA  1079
      ||| |||||||||| |||||||  ||||||||
seq2  GGC-ACACGAGCATGGGTAATAACTAAAATCA  1076