BAC Information

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BAC

Clone NameB6Ng01-255J15
Chromosome5 (Build37)
Map Location 13,698,507 - 13,830,036
singlet/doubletdoublet
Overlap geneLOC208055, LOC626053, Speer3, EG626067
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a
Downstream geneLOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255J15.bB6Ng01-255J15.g
ACCGA061770GA061771
length1,0851,099
definitionB6Ng01-255J15.b B6Ng01-255J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,698,507 - 13,699,596)(13,828,925 - 13,830,036)
sequence
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattggtggtttcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcgatcttaaagcacaagccattgctgtt
ctattcaggaattttttctctgtgcccatatctttgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttaggtttgaccttagtacaaggagagaggagttgtcagtataat
taagttaggacagagcagctgcattttctccgttttgctaacaccatggc
ttccctggttccatggttgcttgttttattgagttctactctcctattct
ttcaaatattctcattttgtttagcttattgtgggattttatattgagtt
tattttcttatgttatttgttattcaaacaaaacttccctttgtttttgt
tttttgctttctgatttttgtttttgtttgcttacttgctcgcttggttg
ttgtaacaattatattttgggggcataattatgttcttaccttaaatttc
taggtgaactcttagagttcacataggaatatcacttggaagaatgaaga
aagcaatagtagatattatttaattgcattgccattatagagtagatatc
acctgccccacaatttacctggagaatggattgaagatgaagcattagag
taccaggttttgtgctcacatctctgcattaataagtgggactaattcct
ggttatgatttagtttcaccagctgggagaagaaatttttaattcgttat
aggcaatgataatggattcactaacatccacctcaagccatttacgtctg
atgttcaacccattggtaactacatgttcagattctgtttactcatttat
gttatagaggtaaagattgaatgtttttttctgtc

gaattcactgatacaggaatcaacttcatgaatagaacaccattagtaca
gacactaagaccaacatctcatggaaattccacatctaccacccacaatc
ctagggaaagtttgagagagacagtgaactcagcaaacactagtttacta
aattctctctctagctcagattatcctggccctccctcatctccattgcc
ctcacctacttctgggccacctcattcactcctaaagatctaactccctt
ttaactcctatacagaagatcattccttcacagccatcactttccagcgc
agactacccatctgactgggtatcctatcctaactcttcctcctaaggtc
ccttctctgctcacatgttgacagtttcctgcctggtccctggccagagg
acccacatgctcctactccactctccctggaaaacagaataatctactcc
tcaaagagatatctccaaagtcttctagagctgtaagatttgtggtagct
caaaatgaccacggttgtaaaaagtttagtaaatgtgttcttttcccaga
ctttgcctcactgcaaggtgtgccaagagatagtcctctgattgtataga
aaagcccacacaatgtctcaggtctttaagtttgccccttaatgtcgcta
aaggttaaccaatgatagactgccccccctccccaaaaaattgtataaaa
ggtgtgtgctttagctactcggggtcgcttctatcccgatttcagaaccc
cagagcgctggatcaataaacctcttgctttttgtattgatctccgtctc
tgtgtctctatgaggggaacgtccctgacataaggttttttgcattttat
agcgcctcagtgggaaggacccttcacagtgataatcaccattaccaagc
tcctgggacaccagtgttggtaccatctctccagactaaagagagcacct
acccaagcataaatagtctgtgcaatactgggacattctacactccagtt
ttccagaagccccaagagtactagatgagaaaccaagtgatcgtccctca
gtggtgcacttctgccaatatggagactctcattctcattgccttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13698507_13699596
seq2: B6Ng01-255J15.b_46_1130

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGCTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGCTATTTGATT  50

seq1  TTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGGTGGTTTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGGTGGTTTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA  200

seq1  TGAGGTCCCATTTGTCAATCCTCGATCTTAAAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTGTCAATCCTCGATCTTAAAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATTTTTTCTCTGTGCCCATATCTTTGAGACTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTTTCTCTGTGCCCATATCTTTGAGACTTTTCCCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350

seq1  TCCACTTAGGTTTGACCTTAGTACAAGGAGAGAGGAGTTGTCAGTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGGTTTGACCTTAGTACAAGGAGAGAGGAGTTGTCAGTATAAT  400

seq1  TAAGTTAGGACAGAGCAGCTGCATTTTCTCCGTTTTGCTAACACCATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAGGACAGAGCAGCTGCATTTTCTCCGTTTTGCTAACACCATGGC  450

seq1  TTCCCTGGTTCCATGGTTGCTTGTTTTATTGAGTTCTACTCTCCTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGTTCCATGGTTGCTTGTTTTATTGAGTTCTACTCTCCTATTCT  500

seq1  TTCAAATATTCTCATTTTGTTTAGCTTATTGTGGGATTTTATATTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATTCTCATTTTGTTTAGCTTATTGTGGGATTTTATATTGAGTT  550

seq1  TATTTTCTTATGTTATTTGTTATTCAAACAAAACTTCCCTTTGTTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTATGTTATTTGTTATTCAAACAAAACTTCCCTTTGTTTTTGT  600

seq1  TTTTTGCTTTCTGATTTTTGTTTTTGTTTGCTTACTTGCTCGCTTGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTTCTGATTTTTGTTTTTGTTTGCTTACTTGCTCGCTTGGTTG  650

seq1  TTGTAACAATTATATTTTGGGGGCATAATTATGTTCTTACCTTAAATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAATTATATTTTGGGGGCATAATTATGTTCTTACCTTAAATTTC  700

seq1  TAGGTGAACTCTTAGAGTTCACATAGGAATATCACTTGGAAGAATGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAACTCTTAGAGTTCACATAGGAATATCACTTGGAAGAATGAAGA  750

seq1  AGGCAATAGTAGATATTATTTAATTGCATTGCCATTATAGAGTAGATATC  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAGTAGATATTATTTAATTGCATTGCCATTATAGAGTAGATATC  800

seq1  ACCTGCCCCACAATTTACCTGGAGAATGGATTGAAGATGAAGCATTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCACAATTTACCTGGAGAATGGATTGAAGATGAAGCATTAGAG  850

seq1  TACCAGGTTTTGTGCTCACATCTCTGCATTAATAAGTGGGACTAATTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTTTTGTGCTCACATCTCTGCATTAATAAGTGGGACTAATTCCT  900

seq1  GGTTATGATTAGTTTTCACCAGCTGGGAGAAGAAATTTTTAATTCG-TAT  949
      ||||||||||   ||||||||||||||||||||||||||||||||| |||
seq2  GGTTATGATTTAGTTTCACCAGCTGGGAGAAGAAATTTTTAATTCGTTAT  950

seq1  AGGCAATGATAAATGGATCCACTAACATCCACTCAAAGCCATTTACGTCT  999
      |||||||||| ||||||| |||||||||||||   |||||||||||||||
seq2  AGGCAATGAT-AATGGATTCACTAACATCCACCTCAAGCCATTTACGTCT  999

seq1  GATGTTCAACCCATTTGGTAACTACATGTTCAAGATTCTGTTTAACTCAT  1049
      ||||||||||||| ||||||||||||||||| ||||||||||| ||||||
seq2  GATGTTCAACCCA-TTGGTAACTACATGTTC-AGATTCTGTTT-ACTCAT  1046

seq1  TTATGTTATAAGAAGTAAAAGAATGAATGTTTTTTTCTGTC  1090
      ||||||||| ||| || ||||| ||||||||||||||||||
seq2  TTATGTTAT-AGAGGT-AAAGATTGAATGTTTTTTTCTGTC  1085


seq1: chr5_13828925_13830036
seq2: B6Ng01-255J15.g_67_1165 (reverse)

seq1  AAATAAGCAAATGAGAATGAAGAGTCCTCCATTATTGGGCAG-AGTGCCA  49
      |||||||  |||||||||| ||||| ||||| |||| ||||| |||| ||
seq2  AAATAAGGCAATGAGAATG-AGAGT-CTCCA-TATT-GGCAGAAGTG-CA  45

seq1  CCAACTGAGGGACGATTCACCTTGGTTTCTCCATCCTAGTACCTCTTTGG  99
      || |||||||||||| ||| |||||||||| ||| |||||| ||| ||||
seq2  CC-ACTGAGGGACGA-TCA-CTTGGTTTCT-CAT-CTAGTA-CTC-TTGG  88

seq1  GGCTTTCTGGAAAACTGGAGTGTAGAATGTCCCAGTTATTGCACAGACTA  149
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGC-TTCTGGAAAACTGGAGTGTAGAATGTCCCAG-TATTGCACAGACTA  136

seq1  TTTATGCTTGGGTAGGTGCTCTCTTTAGTCTGGAGAGATGGTACCAACAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTGGGTAGGTGCTCTCTTTAGTCTGGAGAGATGGTACCAACAC  186

seq1  TGGTGTCCCAGGAGCTTGGTAATGGTGATTATCACTGTGAAGGGTCCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCCAGGAGCTTGGTAATGGTGATTATCACTGTGAAGGGTCCTTC  236

seq1  CCACTGAGGCGCTATAAAATGCAAAAAACCTTATGTCAGGGACGTTCCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGGCGCTATAAAATGCAAAAAACCTTATGTCAGGGACGTTCCCC  286

seq1  TCATAGAGACACAGAGACGGAGATCAATACAAAAAGCAAGAGGTTTATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGACACAGAGACGGAGATCAATACAAAAAGCAAGAGGTTTATTG  336

seq1  ATCCAGCGCTCTGGGGTTCTGAAATCGGGATAGAAGCGACCCCGAGTAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCGCTCTGGGGTTCTGAAATCGGGATAGAAGCGACCCCGAGTAGC  386

seq1  TAAAGCACACACCTTTTATACAATTTTTTGGGGAGGGGGGGCAGTCTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACACACCTTTTATACAATTTTTTGGGGAGGGGGGGCAGTCTATC  436

seq1  ATTGGTTAACCTTTAGCGACATTAAGGGGCAAACTTAAAGACCTGAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTAACCTTTAGCGACATTAAGGGGCAAACTTAAAGACCTGAGACA  486

seq1  TTGTGTGGGCTTTTCTATACAATCAGAGGACTATCTCTTGGCACACCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGGCTTTTCTATACAATCAGAGGACTATCTCTTGGCACACCTTG  536

seq1  CAGTGAGGCAAAGTCTGGGAAAAGAACACATTTACTAAACTTTTTACAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGCAAAGTCTGGGAAAAGAACACATTTACTAAACTTTTTACAAC  586

seq1  CGTGGTCATTTTGAGCTACCACAAATCTTACAGCTCTAGAAGACTTTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCATTTTGAGCTACCACAAATCTTACAGCTCTAGAAGACTTTGGA  636

seq1  GATATCTCTTTGAGGAGTAGATTATTCTGTTTTCCAGGGAGAGTGGAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTCTTTGAGGAGTAGATTATTCTGTTTTCCAGGGAGAGTGGAGTA  686

seq1  GGAGCATGTGGGTCCTCTGGCCAGGGACCAGGCAGGAAACTGTCAACATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGTGGGTCCTCTGGCCAGGGACCAGGCAGGAAACTGTCAACATG  736

seq1  TGAGCAGAGAAGGGACCTTAGGAGGAAGAGTTAGGATAGGATACCCAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAGAAGGGACCTTAGGAGGAAGAGTTAGGATAGGATACCCAGTC  786

seq1  AGATGGGTAGTCTGCGCTGGAAAGTGATGGCTGTGAAGGAATGATCTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTAGTCTGCGCTGGAAAGTGATGGCTGTGAAGGAATGATCTTCT  836

seq1  GTATAGGAGTTAAAAGGGAGTTAGATCTTTAGGAGTGAATGAGGTGGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGAGTTAAAAGGGAGTTAGATCTTTAGGAGTGAATGAGGTGGCCC  886

seq1  AGAAGTAGGTGAGGGCAATGGAGATGAGGGAGGGCCAGGATAATCTGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGGTGAGGGCAATGGAGATGAGGGAGGGCCAGGATAATCTGAGC  936

seq1  TAGAGAGAGAATTTAGTAAACTAGTGTTTGCTGAGTTCACTGTCTCTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGAATTTAGTAAACTAGTGTTTGCTGAGTTCACTGTCTCTCTC  986

seq1  AAACTTTCCCTAGGATTGTGGGTGGTAGATGTGGAATTTCCATGAGATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCCCTAGGATTGTGGGTGGTAGATGTGGAATTTCCATGAGATGT  1036

seq1  TGGTCTTAGTGTCTGTACTAATGGTGTTCTATTCATGAAGTTGATTCCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTAGTGTCTGTACTAATGGTGTTCTATTCATGAAGTTGATTCCTG  1086

seq1  TATCAGTGAATTC  1112
      |||||||||||||
seq2  TATCAGTGAATTC  1099


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