BAC Information

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BAC

Clone NameB6Ng01-256N10
Chromosome5 (Build37)11 (Build37)
Map Location 51,186,665 - 51,187,79551,704,737 - 51,704,775
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256N10.bB6Ng01-256N10.g
ACCGA062695GA062696
length1,118261
definitionB6Ng01-256N10.b B6Ng01-256N10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,186,665 - 51,187,795)(51,704,737 - 51,704,775)
sequence
gaattctcctccaagctgcagagagtctgttctgagggcagggataattt
tcgcagtaacacactgagtgtgataatcaggtttatgcacggttgtaaag
aatgtgctgacagatggaaaagaagccacctcagtctgcactggattcat
ttttatatatattaaaaaaatcatatgacacctgactctgattcaaatag
cagtccttctcctgctgtcttccaatagcagaaatattttagagtatata
ggaaaattccaggccccggtggagggattctctagcatttctagttctgt
gctcattggagcatcataggctcctgttttaccattcaaggtgttgtgtg
tgatgaaaaacttactcccaccaaacatgaatctttatatttaagtgccc
tagatagcaagcaagtaaattcagaaaaggatgtgaacagaatggtttcc
acgaaaggcaggcactctctaaccttcctctggaaagcaaaatatcagca
aactcaccatagctcagctttcatcagagcatattaaatatgattgcaaa
ctgtggagagcatttaggtcacctgggccctgctggggtgacatttgaga
acacactgattaaaagcagcgaacactctaaagcttgttcctttctctta
ataataatgagtttacagtgactaacccatgtagcactttgattctccaa
gacactggtttggccctccagaggaaagaatccagatctcagtgtctttt
ttcttgcaaaccttaattctacatgtgtagaaagaaaaaaaacaattctt
gttagaaatgttaataaataaacatcccccaaacgagctaaggtgagaag
cagtctccttgtcactcatcagcatgtctttgatagggctgctattacag
agcgctcagagaactaggttgatgaaattccatgtctggaagcaagaagt
ataaacttaagatgtgaagagagtcttttttttatagatatttcttcatt
tacatttcaatgctatccctgtcatgttccactctggaaagtccctatat
ctccccctacctgttctcatccacccacttctgctctgacatgccatggc
ccctgtcttggggcatat

cacatctaagaatggcaggtactgatgtggttgggatgtaaataagctca
ggaatgtcaaataccaggatggaggttccagaaaagctaaaaataacact
aacttcctgcaatattaatcatgggcatatactcagagtgatcaaagtaa
aagttggaatacaaaaaggaagctaaatattcaggtgactatagcagtat
tcacaatagccaagttaggaacttgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51186665_51187795
seq2: B6Ng01-256N10.b_48_1165

seq1  GAATTCTCCTCCAAGCTGCAGAGAGTCTGTTCTGAGGGCAGGGATAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCAAGCTGCAGAGAGTCTGTTCTGAGGGCAGGGATAATTT  50

seq1  TCGCAGTAACACACTGAGTGTGATAATCAGGTTTATGCACGGTTGTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGTAACACACTGAGTGTGATAATCAGGTTTATGCACGGTTGTAAAG  100

seq1  AATGTGCTGACAGATGGAAAAGAAGCCACCTCAGTCTGCACTGGATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTGACAGATGGAAAAGAAGCCACCTCAGTCTGCACTGGATTCAT  150

seq1  TTTTATATATATTAAAAAAATCATATGACACCTGACTCTGATTCAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATATTAAAAAAATCATATGACACCTGACTCTGATTCAAATAG  200

seq1  CAGTCCTTCTCCTGCTGTCTTCCAATAGCAGAAATATTTTAGAGTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTCTCCTGCTGTCTTCCAATAGCAGAAATATTTTAGAGTATATA  250

seq1  GGAAAATTCCAGGCCCCGGTGGAGGGATTCTCTAGCATTTCTAGTTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCCAGGCCCCGGTGGAGGGATTCTCTAGCATTTCTAGTTCTGT  300

seq1  GCTCATTGGAGCATCATAGGCTCCTGTTTTACCATTCAAGGTGTTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGGAGCATCATAGGCTCCTGTTTTACCATTCAAGGTGTTGTGTG  350

seq1  TGATGAAAAACTTACTCCCACCAAACATGAATCTTTATATTTAAGTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAAACTTACTCCCACCAAACATGAATCTTTATATTTAAGTGCCC  400

seq1  TAGATAGCAAGCAAGTAAATTCAGAAAAGGATGTGAACAGAATGGTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCAAGCAAGTAAATTCAGAAAAGGATGTGAACAGAATGGTTTCC  450

seq1  ACGAAAGGCAGGCACTCTCTAACCTTCCTCTGGAAAGCAAAATATCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGGCAGGCACTCTCTAACCTTCCTCTGGAAAGCAAAATATCAGCA  500

seq1  AACTCACCATAGCTCAGCTTTCATCAGAGCATATTAAATATGATTGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACCATAGCTCAGCTTTCATCAGAGCATATTAAATATGATTGCAAA  550

seq1  CTGTGGAGAGCATTTAGGTCACCTGGGCCCTGCTGGGGTGACATTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGAGCATTTAGGTCACCTGGGCCCTGCTGGGGTGACATTTGAGA  600

seq1  ACACACTGATTAAAAGCAGCGAACACTCTAAAGCTTGTTCCTTTCTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGATTAAAAGCAGCGAACACTCTAAAGCTTGTTCCTTTCTCTTA  650

seq1  ATAATAATGAGTTTACAGTGACTAACCCATGTAGCACTTTGATTCTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGAGTTTACAGTGACTAACCCATGTAGCACTTTGATTCTCCAA  700

seq1  GACACTGGTTTGGCCCTCCAGAGGAAAGAATCCAGATCTCAGTGTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGTTTGGCCCTCCAGAGGAAAGAATCCAGATCTCAGTGTCTTTT  750

seq1  TTCTTGCAAACCTTAATTCTACATGTGTAGAAAGAAAAAAAACAATTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAAACCTTAATTCTACATGTGTAGAAAGAAAAAAAACAATTCTT  800

seq1  GTTAGAAATGTTAATAAATAAACATCCCCCAAACGAGCTAAGGTGAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATGTTAATAAATAAACATCCCCCAAACGAGCTAAGGTGAGAAG  850

seq1  CAGTCTCCTTGTCACTCATCAGCATGTCTTTGATAGGGCTGCTATTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCTTGTCACTCATCAGCATGTCTTTGATAGGGCTGCTATTACAG  900

seq1  AGCGCTCAGAGAACTAGGTTGATGAAATTCCATGTCTGGAAGCAAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTCAGAGAACTAGGTTGATGAAATTCCATGTCTGGAAGCAAGAAGT  950

seq1  ATAAACTTAAGATGTGAAGAGAGTTCTTTTTTTTATTAGATATTTTCTTC  1000
      ||||||||||||||||||||||| ||||||||||| |||||| |||||||
seq2  ATAAACTTAAGATGTGAAGAGAG-TCTTTTTTTTA-TAGATA-TTTCTTC  997

seq1  ATTTACATTTCAAATGCTATCCCCTGTCATTGTTTCCACTCT-GAAAGTC  1049
      ||||||||||| |||||||| |||||||||   ||||||||| |||||| 
seq2  ATTTACATTTC-AATGCTAT-CCCTGTCAT--GTTCCACTCTGGAAAGT-  1042

seq1  CCCTATATCCTCCCCCTACCCTGTTCTCCAATCCACCCACTCCTGCTTCC  1099
      |||||||| ||||||||| |||||||||  ||||||||||| |||||  |
seq2  CCCTATAT-CTCCCCCTA-CCTGTTCTC--ATCCACCCACTTCTGCT--C  1086

seq1  TGGCCATGGCAT-GCCCCTGTCCTGGGGCATAT  1131
      | | |||| ||| ||||||||| ||||||||||
seq2  T-GACATGCCATGGCCCCTGTCTTGGGGCATAT  1118


seq1: chr11_51704737_51704775
seq2: B6Ng01-256N10.g_294_332 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACAA  39
      |||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACAA  39


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