BAC Information

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BAC

Clone NameB6Ng01-257H17
Chromosome5 (Build37)
Map Location 135,643,171 - 135,736,990
singlet/doubletdoublet
Overlap geneBcl7b, LOC100040069, Baz1b, Fzd9
Upstream geneWbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2
Downstream geneFkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257H17.bB6Ng01-257H17.g
ACCGA063169GA063170
length760568
definitionB6Ng01-257H17.b B6Ng01-257H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,736,235 - 135,736,990)(135,643,171 - 135,643,744)
sequence
gaattctgggaagataatcaagggctaattattcctgccacctcttctgt
acaactttgggtgaacctgcctttctgagagcatatccttggccaggtct
gtctgccagtccagctggcttaacttttaaggagagatagcagcaagcca
ccagtcaggagtagagtctgactcttctaggatcttccccgtaatgtgcc
tccaagtcaattgtactaccagagcctccctgaactgtctcatctggcct
tgaaatccctctgtatcccggacaggctttgaagtctctgttctcctttg
cctctgcctctcccccttctttctaagtacctggaaccacaggcctgccg
caccctgactcttgagaaccccacattcaccatttgtacattgctttata
tataaccaacttcctcccagttccttacctaatttgtctctgaattcttt
ctgtgacaatgctgggaccctggggacaggggactgagccctcacaccgc
tgggcagagctgtcacactgctcccgagactgctccactctgcattgtca
ctgagcaagtgtcctgccagcaccaggcccttctcctgtccaacaattaa
tgtcctgttggggcccacataaacggctgcaactctgtgtgtgtgtgcgt
gtgcatgtgcatgtgtgtgtgcgtgtgtgttttgagtatgtaaccctgcc
ctggaactccttttgtatagcatgctgggcctccaacttcacatacattc
tccttgccta
actctgtagaccaggctggccttgaactcagaaatccacctgcctcttcc
gccagagtgctgggataaatgtgttcatcacagtccctggtccagaagtt
ctttcaaaagagaaatatttatgtcctcagtacttggtccaatgcacaga
acacaggcaatgttttatccagaactgaattccctgacagtgaagtggaa
tgctaaaagtatgagccaggtgcaaaatactcaggaagagccgcagtgtg
acctggatgttggaaaagtagttgattcaatcagaagaaatttccaggtg
ggtagctgagaattcgaagaccagaagtcaaaatgaaggaaggtgtgata
atgactccggaacacagctatttagacaatgatgacacagatctcctttt
aggtgaacatgcagcgcataaataattccttgaagggtcaggggtcatgg
gggattaaaggacttgataacagcctaaaactcactagtgaaaaccaact
tctacaaattgtcctctgtgccatatacatgtaaagaaaaaaaaaataaa
gaaagaatcaaagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135736235_135736990
seq2: B6Ng01-257H17.b_45_803 (reverse)

seq1  AGGC-AGGAGAATGTCTGTG-AGTTGGAGG-CCAGCCTGCTCTACATAAG  47
      |||| |||||||||| |||| ||||||||| ||||| |||| |||| |||
seq2  AGGCAAGGAGAATGTATGTGAAGTTGGAGGCCCAGCATGCTATACAAAAG  50

seq1  GAGTTCCAGGGCAGGGTTACATACTCAAAACACACACGCACACACACATG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGGCAGGGTTACATACTCAAAACACACACGCACACACACATG  100

seq1  CACATGCACACGCACACACACACAGAGTTGCAGCCGTTTATGTGGGCCCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACACGCACACACACACAGAGTTGCAGCCGTTTATGTGGGCCCC  150

seq1  AACAGGACATTAATTGTTGGACAGGAGAAGGGCCTGGTGCTGGCAGGACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACATTAATTGTTGGACAGGAGAAGGGCCTGGTGCTGGCAGGACA  200

seq1  CTTGCTCAGTGACAATGCAGAGTGGAGCAGTCTCGGGAGCAGTGTGACAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGTGACAATGCAGAGTGGAGCAGTCTCGGGAGCAGTGTGACAG  250

seq1  CTCTGCCCAGCGGTGTGAGGGCTCAGTCCCCTGTCCCCAGGGTCCCAGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCAGCGGTGTGAGGGCTCAGTCCCCTGTCCCCAGGGTCCCAGCA  300

seq1  TTGTCACAGAAAGAATTCAGAGACAAATTAGGTAAGGAACTGGGAGGAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAGAAAGAATTCAGAGACAAATTAGGTAAGGAACTGGGAGGAAG  350

seq1  TTGGTTATATATAAAGCAATGTACAAATGGTGAATGTGGGGTTCTCAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATATATAAAGCAATGTACAAATGGTGAATGTGGGGTTCTCAAGA  400

seq1  GTCAGGGTGCGGCAGGCCTGTGGTTCCAGGTACTTAGAAAGAAGGGGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTGCGGCAGGCCTGTGGTTCCAGGTACTTAGAAAGAAGGGGGAG  450

seq1  AGGCAGAGGCAAAGGAGAACAGAGACTTCAAAGCCTGTCCGGGATACAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAAAGGAGAACAGAGACTTCAAAGCCTGTCCGGGATACAGA  500

seq1  GGGATTTCAAGGCCAGATGAGACAGTTCAGGGAGGCTCTGGTAGTACAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCAAGGCCAGATGAGACAGTTCAGGGAGGCTCTGGTAGTACAAT  550

seq1  TGACTTGGAGGCACATTACGGGGAAGATCCTAGAAGAGTCAGACTCTACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGAGGCACATTACGGGGAAGATCCTAGAAGAGTCAGACTCTACT  600

seq1  CCTGACTGGTGGCTTGCTGCTATCTCTCCTTAAAAGTTAAGCCAGCTGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGGTGGCTTGCTGCTATCTCTCCTTAAAAGTTAAGCCAGCTGGA  650

seq1  CTGGCAGACAGACCTGGCCAAGGATATGCTCTCAGAAAGGCAGGTTCACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGACAGACCTGGCCAAGGATATGCTCTCAGAAAGGCAGGTTCACC  700

seq1  CAAAGTTGTACAGAAGAGGTGGCAGGAATAATTAGCCCTTGATTATCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGTACAGAAGAGGTGGCAGGAATAATTAGCCCTTGATTATCTTC  750

seq1  CCAGAATTC  756
      |||||||||
seq2  CCAGAATTC  759

seq1: chr5_135643171_135643744
seq2: B6Ng01-257H17.g_67_640

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50

seq1  TCTTCCGCCAGAGTGCTGGGATAAATGTGTTCATCACAGTCCCTGGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGCCAGAGTGCTGGGATAAATGTGTTCATCACAGTCCCTGGTCCA  100

seq1  GAAGTTCTTTCAAAAGAGAAATATTTATGTCCTCAGTACTTGGTCCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTTTCAAAAGAGAAATATTTATGTCCTCAGTACTTGGTCCAATG  150

seq1  CACAGAACACAGGCAATGTTTTATCCAGAACTGAATTCCCTGACAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACACAGGCAATGTTTTATCCAGAACTGAATTCCCTGACAGTGAA  200

seq1  GTGGAATGCTAAAAGTATGAGCCAGGTGCAAAATACTCAGGAAGAGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGCTAAAAGTATGAGCCAGGTGCAAAATACTCAGGAAGAGCCGC  250

seq1  AGTGTGACCTGGATGTTGGAAAAGTAGTTGATTCAATCAGAAGAAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACCTGGATGTTGGAAAAGTAGTTGATTCAATCAGAAGAAATTTC  300

seq1  CAGGTGGGTAGCTGAGAATTCGAAGACCAGAAGTCAAAATGAAGGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGTAGCTGAGAATTCGAAGACCAGAAGTCAAAATGAAGGAAGGT  350

seq1  GTGATAATGACTCCGGAACACAGCTATTTAGACAATGATGACACAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATGACTCCGGAACACAGCTATTTAGACAATGATGACACAGATCT  400

seq1  CCTTTTAGGTGAACATGCAGCGCATAAATAATTCCTTGAAGGGTCAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAGGTGAACATGCAGCGCATAAATAATTCCTTGAAGGGTCAGGGG  450

seq1  TCATGGGGGATTAAAGGACTTGATAACAGCCTAAAACTCACTAGTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGGATTAAAGGACTTGATAACAGCCTAAAACTCACTAGTGAAAA  500

seq1  CCAACTTCTACAAATTGTCCTCTGTGCCATATACATGTAAAGAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTACAAATTGTCCTCTGTGCCATATACATGTAAAGAAAAAAAA  550

seq1  AAAAAAGAAAGAAAGAAAGAAAAA  574
      || ||||||||||  |||||||||
seq2  AATAAAGAAAGAATCAAAGAAAAA  574