BAC Information

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BAC

Clone NameB6Ng01-257P04
Chromosome5 (Build37)
Map Location 12,574,365 - 12,696,619
singlet/doubletdoublet
Overlap geneSema3d, LOC668069
Upstream geneEG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, LOC668015, LOC100042917
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257P04.bB6Ng01-257P04.g
ACCGA063516GA063517
length1,144979
definitionB6Ng01-257P04.b B6Ng01-257P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,574,365 - 12,575,527)(12,696,106 - 12,696,619)
sequence
gaattccacatgcacttaactgatctgagtatattatgagacaaagaaat
tccttagcatgtttatgtcctttgcaggagatgtcatagggtataattag
taatctaggaaggagagatcgctagaggctatataattctgaaggaaaga
gtcagaacagaaggctttgaaaatctgagaaggggagaggtggagataac
atttgttaagtgaatttgaaaacggggaaataattgaatctaaagatcat
agacagctttgagattttgatttttgctttccacttttcttaccctgcac
tggctgggggtttttttttttttttttctttgtttgttttaaagacaggg
tttcactatgtcacctggcatgctgtcctggaatttgattagtcatgtaa
accacgctgctgaactttacctcagagagattccccttttctccctccta
agtgttattatggctgagggctctctctctctctcgctctctctctctcc
tgaagaagattctcccatcagattataactgaccaaaagtgactgaactc
ctaataactggttaatagctcgtgatctagctgtcccctcttgattggaa
aacctacacattcatggttatacctcacaactcactcttttgcaaagaaa
tttctggtacagaatagggagtgtgccttttaattctagtgtgaaagtga
cttgcttttacgtccattgtttagtttagtgaaatatgaattcagtcctt
tacatgtataaataaaaagatgaaccagggacaactttgagtattaagga
tatgtcaatgaactgaacattatctatgcattcatggacatgacttacat
attcttggtctttatatccagtgtctgttaggttaaaggacaaacataaa
acagaaaatataaatgacatgtcagtgatggcaaggggcaaaaagaaatg
aacaatggacagtcattgcctcaggcacttgcagtaatgtctctctacac
atctcctgtccctgctataaacaattgcacaagacattctgatcttcatt
ccacacatcattcccgtgagatcactggcacctccttcattctgatcaat
agaccacgaacactcagttcaggtttatacactgcactctctct
gaattcttaattaggggaggcctgaggtaactaaagggacttgaattaag
agtgattccaacctggggcaagacagagctccacttaggtctccatttcc
attttatggcttcagtaagaatctctaagaagcttattacatctgtcaat
taagccagctgtgtgacccaaggggaaatgaatgtttgtaaaaaggcttt
caaatgcctggaatgtatatttccagaagggaactttgtgtcttggtaat
gtctcaacttcaaaagagagagaaaggttttcccaatgaggctctgtgct
atactctactatgtgtagcaatatgggtgattttgatgatatgttttaga
tttctaagagcaaacaaacttcatccttaatttactcttgaagaccactc
atagaccatgggccacattcttgtgaaaatatccagatagagcaatttga
taacaaagacagtcagtgctaaactgactggaattttctcagtcaagtcc
ttgatcagggtcaggctagttaaagaataggaaataacaatatttgactt
gtttctttcatcaaggatggtgaaaagattacccatgcagccttatagat
gtcagtggcttttcactcaattaaacctaagggatgtctgggtagtcaaa
gagccttgaggaaaagtaacctgttccagcttgaggatccttggctgtgg
actaaagacaccaatgacctcttcttttttgagttgcaaaggccagggaa
cacaggtttcactcccccatatttcagcagcctatgctaagcttagatga
ctcaaggcacaatggacgaagcaagtcatgtgggattggaatcagtaaca
ggctccattttcataaagaattacttagagaattttgaatgttgagatgg
tatttgggatttgagattatcaggagtagttagatgtcaattacatataa
ctttaccaaaaatatttcaattttttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12574365_12575527
seq2: B6Ng01-257P04.b_51_1194

seq1  GAATTCCACATGCACTTAACTGATCTGAGTATATTATGAGACAAAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATGCACTTAACTGATCTGAGTATATTATGAGACAAAGAAAT  50

seq1  TCCTTAGCATGTTTATGTCCTTTGCAGGAGATGTCATAGGGTATAATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGCATGTTTATGTCCTTTGCAGGAGATGTCATAGGGTATAATTAG  100

seq1  TAATCTAGGAAGGAGAGATCGCTAGAGGCTATATAATTCTGAAGGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGGAAGGAGAGATCGCTAGAGGCTATATAATTCTGAAGGAAAGA  150

seq1  GTCAGAACAGAAGGCTTTGAAAATCTGAGAAGGGGAGAGGTGGAGATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACAGAAGGCTTTGAAAATCTGAGAAGGGGAGAGGTGGAGATAAC  200

seq1  ATTTGTTAAGTGAATTTGAAAACGGGGAAATAATTGAATCTAAAGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAGTGAATTTGAAAACGGGGAAATAATTGAATCTAAAGATCAT  250

seq1  AGACAGCTTTGAGATTTTGATTTTTGCTTTCCACTTTTCTTACCCTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTTTGAGATTTTGATTTTTGCTTTCCACTTTTCTTACCCTGCAC  300

seq1  TGGCTGGGGGTTTTTTTTTTTTTTTTTCTTTGTTTGTTTTAAAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGGGTTTTTTTTTTTTTTTTTCTTTGTTTGTTTTAAAGACAGGG  350

seq1  TTTCACTATGTCACCTGGCATGCTGTCCTGGAATTTGATTAGTCATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATGTCACCTGGCATGCTGTCCTGGAATTTGATTAGTCATGTAA  400

seq1  ACCACGCTGCTGAACTTTACCTCAGAGAGATTCCCCTTTTCTCCCTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCTGCTGAACTTTACCTCAGAGAGATTCCCCTTTTCTCCCTCCTA  450

seq1  AGTGTTATTATGGCTGAGGGCTCTCTCTCTCTCTCGCTCTCTCTCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTATTATGGCTGAGGGCTCTCTCTCTCTCTCGCTCTCTCTCTCTCC  500

seq1  TGAAGAAGATTCTCCCATCAGATTATAACTGACCAAAAGTGACTGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGATTCTCCCATCAGATTATAACTGACCAAAAGTGACTGAACTC  550

seq1  CTAATAACTGGTTAATAGCTCGTGATCTAGCTGTCCCCTCTTGATTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACTGGTTAATAGCTCGTGATCTAGCTGTCCCCTCTTGATTGGAA  600

seq1  AACCTACACATTCATGGTTATACCTCACAACTCACTCTTTTGCAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACACATTCATGGTTATACCTCACAACTCACTCTTTTGCAAAGAAA  650

seq1  TTTCTGGTACAGAATAGGGAGTGTGCCTTTTAATTCTAGTGTGAAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTACAGAATAGGGAGTGTGCCTTTTAATTCTAGTGTGAAAGTGA  700

seq1  CTTGCTTTTACGTCCATTGTTTAGTTTAGTGAAATATGAATTCAGTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTTACGTCCATTGTTTAGTTTAGTGAAATATGAATTCAGTCCTT  750

seq1  TACATGTATAAATAAAAAGATGAACCAGGGACAACTTTGAGTATTAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATAAATAAAAAGATGAACCAGGGACAACTTTGAGTATTAAGGA  800

seq1  TATGTCAATGAACTGAACATTATCTATGCATTCATGGACATGACTTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAATGAACTGAACATTATCTATGCATTCATGGACATGACTTACAT  850

seq1  ATTCTTGGTCTTTATATCCAGTGTCTGTTAGGTTAAAGGACAAACATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTCTTTATATCCAGTGTCTGTTAGGTTAAAGGACAAACATAAA  900

seq1  ACAGAAAATATAAATGACATGTCAGGTGATGGCAAGGGGCAAAAAGAAAT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAGAAAATATAAATGACATGTCA-GTGATGGCAAGGGGCAAAAAGAAAT  949

seq1  GAACAATGGACAGTCATTGCCTCAGGCACTTGCAGTAATTGTCTCCTCTA  1000
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  GAACAATGGACAGTCATTGCCTCAGGCACTTGCAGTAA-TGTCT-CTCTA  997

seq1  CACCATCTCCTGTCCCTGCTATAAACCATTGCACAAGACA-TCTGAATCT  1049
      || ||||||||||||||||||||||| ||||||||||||| |||| ||||
seq2  CA-CATCTCCTGTCCCTGCTATAAACAATTGCACAAGACATTCTG-ATCT  1045

seq1  TCATCCCACACATTCCATTCCCGTTGAGATCACTGGCAACTTCTTCCATT  1099
      |||| ||||||||  |||||||| |||||||||||||| || ||| ||||
seq2  TCATTCCACACAT--CATTCCCG-TGAGATCACTGGCACCTCCTT-CATT  1091

seq1  CTGAACCCAATAGACAACCAGACAACCTTCAGTTTCAAGTTTTATACAAT  1149
      ||||   |||||||| ||     |||  ||||||   || ||||||||  
seq2  CTGA--TCAATAGACCAC----GAACACTCAGTT--CAGGTTTATACA--  1131

seq1  CTGCAACTCTCTCT  1163
      |||| |||||||||
seq2  CTGC-ACTCTCTCT  1144

seq1: chr5_12696106_12696619
seq2: B6Ng01-257P04.g_67_580 (reverse)

seq1  CTGACCCTGATCAAGGACTTGACTGAGAAAATTCCAGTCAGTTTAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTGATCAAGGACTTGACTGAGAAAATTCCAGTCAGTTTAGCACT  50

seq1  GACTGTCTTTGTTATCAAATTGCTCTATCTGGATATTTTCACAAGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTTTGTTATCAAATTGCTCTATCTGGATATTTTCACAAGAATGT  100

seq1  GGCCCATGGTCTATGAGTGGTCTTCAAGAGTAAATTAAGGATGAAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGGTCTATGAGTGGTCTTCAAGAGTAAATTAAGGATGAAGTTTG  150

seq1  TTTGCTCTTAGAAATCTAAAACATATCATCAAAATCACCCATATTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTAGAAATCTAAAACATATCATCAAAATCACCCATATTGCTAC  200

seq1  ACATAGTAGAGTATAGCACAGAGCCTCATTGGGAAAACCTTTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAGAGTATAGCACAGAGCCTCATTGGGAAAACCTTTCTCTCTCT  250

seq1  TTTGAAGTTGAGACATTACCAAGACACAAAGTTCCCTTCTGGAAATATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTTGAGACATTACCAAGACACAAAGTTCCCTTCTGGAAATATAC  300

seq1  ATTCCAGGCATTTGAAAGCCTTTTTACAAACATTCATTTCCCCTTGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGCATTTGAAAGCCTTTTTACAAACATTCATTTCCCCTTGGGTC  350

seq1  ACACAGCTGGCTTAATTGACAGATGTAATAAGCTTCTTAGAGATTCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGGCTTAATTGACAGATGTAATAAGCTTCTTAGAGATTCTTAC  400

seq1  TGAAGCCATAAAATGGAAATGGAGACCTAAGTGGAGCTCTGTCTTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCATAAAATGGAAATGGAGACCTAAGTGGAGCTCTGTCTTGCCCC  450

seq1  AGGTTGGAATCACTCTTAATTCAAGTCCCTTTAGTTACCTCAGGCCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAATCACTCTTAATTCAAGTCCCTTTAGTTACCTCAGGCCTCCC  500

seq1  CTAATTAAGAATTC  514
      ||||||||||||||
seq2  CTAATTAAGAATTC  514