BAC Information

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BAC

Clone NameB6Ng01-258D13
Chromosome5 (Build37)
Map Location 59,652,268 - 59,653,463
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC100041425, LOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258D13.bB6Ng01-258D13.g
ACCGA063715GA063716
length1,2061,192
definitionB6Ng01-258D13.b B6Ng01-258D13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctgggg
cttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttcttc
ttggaggcactcagcgctatgagtttccctcttagaaatgcttcattgtg
tcccatagtttgggtattgtgtggcttcattttcattaaactctaaaaag
ttctttaattctttcttattctttctgaccaggtatcaatgagaaaagga
gtgttattcagtttccaccgtgcatgtgccttcattattatgatggtatg
agatcagctagcaatggtgactggatagatcatgtggaacaaattctaca
attaat

gaattctgtgtgggccctttcgggtgtcaggcaactctgctggcaaggca
ccccggtgctagagtggagtggaagggacttgtgccccaggtcagccctg
agtagtctgcttccctatttaccgcagtctcaggttccgcttgattggat
tggggcagacgctgtgttccactcaccagaggtcttaggatcccgtgggg
aatcctgtgtgggcccttgtgggtgtagggcgactccgctggcaaggtac
cccggtgctcaagtggggcggaagggacttgtgctgtgttactccttttg
agaacacttgttttttgttgttgttgttgttgttgttgttgttttgtttt
gttttgtttttttgtttttttttttcactgctaggagctacaaaaagctc
cttgattgattatgggtgggatattgtgtctaattctaattctcaatagt
agtattgtgtctattgtgaatcactgtagttcttgtgtgaattgtcacag
tttctatgagtttgtatgagtcttattgtatctggaagatactgtttcct
tggaaacaattttatttctactatacttgataacctcaactccataactt
tgttctgctgtatgtatgacatttcaaaagaaatgtaaaatgtaaaggtg
gtaaaaatatggtcgaactggagaacccagtggcaaatattctaatacag
taatgacaaaacacatctgattgctctgatgagatattaattgaaaatga
tttggtttgaaaaaataagataatttattgatatgaatatggtgatagaa
taattttatattcaatgcaataatttgagtgctgtagctttcctgctgaa
aatttcccattaaactatgaatctaaaatttgaaatgactttgtattata
gtggggaactcaggactacatgaccacagatagctattccaaggggtcct
ttttcagggtaccaaataaaattagacctcagcaggatcaaagctagtcg
tgtgattagaaatataatagtccaacccaaattccttgattttcaatagt
tttataacatatacctcccatgaagcaccttctaccttgcctataacatt
gaaatataaaaagtatcatttattacacttccttgaacctcagtatgtat
taataaccttcaagtagatagtccttaccttctaaggacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59652268_59653463
seq2: B6Ng01-258D13.g_66_1257

seq1  GAATTCTGTGTGGGCCCTTTCGGGTGTCAGGCAACTCTGCTGGCAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGGGCCCTTTCGGGTGTCAGGCAACTCTGCTGGCAAGGCA  50

seq1  CCCCGGTGCTAGAGTGGAGTGGAAGGGACTTGTGCCCCAGGTCAGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGTGCTAGAGTGGAGTGGAAGGGACTTGTGCCCCAGGTCAGCCCTG  100

seq1  AGTAGTCTGCTTCCCTATTTACCGCAGTCTCAGGTTCCGCTTGATTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTGCTTCCCTATTTACCGCAGTCTCAGGTTCCGCTTGATTGGAT  150

seq1  TGGGGCAGACGCTGTGTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGACGCTGTGTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGG  200

seq1  AATCCTGTGTGGGCCCTTGTGGGTGTAGGGCGACTCCGCTGGCAAGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTGTGGGCCCTTGTGGGTGTAGGGCGACTCCGCTGGCAAGGTAC  250

seq1  CCCGGTGCTCAAGTGGGGCGGAAGGGACTTGTGCTGTGTTACTCCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGCTCAAGTGGGGCGGAAGGGACTTGTGCTGTGTTACTCCTTTTG  300

seq1  AGAACACTTGTTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTGTTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGTTTT  350

seq1  GTTTTGTTTTTTTGTTTTTTTTTTTCACTGCTAGGAGCTACAAAAAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTTGTTTTTTTTTTTCACTGCTAGGAGCTACAAAAAGCTC  400

seq1  CTTGATTGATTATGGGTGGGATATTGTGTCTAATTCTAATTCTCAATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGATTATGGGTGGGATATTGTGTCTAATTCTAATTCTCAATAGT  450

seq1  AGTATTGTGTCTATTGTGAATCACTGTAGTTCTTGTGTGAATTGTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTGTCTATTGTGAATCACTGTAGTTCTTGTGTGAATTGTCACAG  500

seq1  TTTCTATGAGTTTGTATGAGTCTTATTGTATCTGGAAGATACTGTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGAGTTTGTATGAGTCTTATTGTATCTGGAAGATACTGTTTCCT  550

seq1  TGGAAACAATTTTATTTCTACTATACTTGATAACCTCAACTCCATAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAATTTTATTTCTACTATACTTGATAACCTCAACTCCATAACTT  600

seq1  TGTTCTGCTGTATGTATGACATTTCAAAAGAAATGTAAAATGTAAAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCTGTATGTATGACATTTCAAAAGAAATGTAAAATGTAAAGGTG  650

seq1  GTAAAAATATGGTCGAACTGGAGAACCCAGTGGCAAATATTCTAATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATATGGTCGAACTGGAGAACCCAGTGGCAAATATTCTAATACAG  700

seq1  TAATGACAAAACACATCTGATTGCTCTGATGAGATATTAATTGAAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAAAACACATCTGATTGCTCTGATGAGATATTAATTGAAAATGA  750

seq1  TTTGGTTTGAAAAAATAAGATAATTTATTGATATGAATATGGTGATAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTGAAAAAATAAGATAATTTATTGATATGAATATGGTGATAGAA  800

seq1  TAATTTTATATTCAATGCAATAATTTGAGTGCTGTAGCTTTCCTGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATATTCAATGCAATAATTTGAGTGCTGTAGCTTTCCTGCTGAA  850

seq1  AATTTCCCATTAAACTATGAATCTAAAATTTGAAATGAC-TTGTAATATA  899
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AATTTCCCATTAAACTATGAATCTAAAATTTGAAATGACTTTGTATTATA  900

seq1  GT-GGGAACTCAGGACTACATGA-CACAGATAAGCTATTCCAAGGGGTCC  947
      || |||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  GTGGGGAACTCAGGACTACATGACCACAGAT-AGCTATTCCAAGGGGTCC  949

seq1  -TTTTCAGGGTACCAAATAAAATTAGA-CTCAGCAGGATCAAAGCTAGTC  995
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTCAGGGTACCAAATAAAATTAGACCTCAGCAGGATCAAAGCTAGTC  999

seq1  GTGTGATTAGAAATATAAATAGTCCAAACCAAATTCCTTTGATTTTTAAA  1045
      |||||||||||||||| |||||||||| ||||||||| |||| |||| ||
seq2  GTGTGATTAGAAATAT-AATAGTCCAACCCAAATTCC-TTGA-TTTTCAA  1046

seq1  TAGTTTTATAACATTATACCT-CCATGAAGCA-CTTCTACTTTG-CTATA  1092
      ||||||||||||| ||||||| |||||||||| ||||||| ||| |||||
seq2  TAGTTTTATAACA-TATACCTCCCATGAAGCACCTTCTACCTTGCCTATA  1095

seq1  CATTTGAAATAT-AAAAGTAATTCTATTATTATAATTCTTTGGAAACTCA  1141
         ||||||||| |||||||  ||  |||||| | ||| || ||| ||| 
seq2  ACATTGAAATATAAAAAGTA--TCATTTATTACACTTCCTT-GAACCTC-  1141

seq1  AATATAGGATAAAAATAAATTTTCAAGTAGATAGTTCTTTTCTTTAAAGG  1191
      | ||| | || ||    ||  |||||||||||||| |||  |||  ||||
seq2  AGTAT-GTATTAA---TAACCTTCAAGTAGATAGTCCTTACCTTCTAAGG  1187

seq1  ACAAA  1196
      |||||
seq2  ACAAA  1192


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