BAC Information

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BAC

Clone NameB6Ng01-258F20
Chromosome5 (Build37)
Map Location 17,454,099 - 17,557,363
singlet/doubletdoublet
Overlap geneGnat3
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258F20.bB6Ng01-258F20.g
ACCGA063820GA063821
length1,1651,031
definitionB6Ng01-258F20.b B6Ng01-258F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,454,099 - 17,455,269)(17,556,806 - 17,557,363)
sequence
gaattcttttggataactgctaccacatgcaaagtatagggaaaaaatcc
ttagacactcaagtagtgctagatgaaaggcaaggccactgtgccaaaat
gacatgtacagtcatcactgtgacctcctggttttaaatttttttctggg
tgcctccttttggtatcatcctacccatgctcctgagttttcacacattt
atattttctcttctccatctgtttgtgtacaggcttatttaggcatacat
gcattcaaatttgtgtgttcatgagcatctgtgcacatgcatgcacatgt
gtgcagaggccaaaagtcaaccttgaatattgatcctcaggagcaagtct
attcggccaccagtctccccacatatacctttctagcctttccagcaccg
aagttacaaaatttactattatccccaattgttttttacattacttctgc
atattgaattcagatatcaatgcatatatgcaagtagtgtgcaatctgac
tatgctctcaagccctagctttctactttaatttctagcaaagtcttttt
ttaacagattctttgcagctcattcacttcaaaggagaaagtgaaataga
acctcaaacaatttgttctctcacaatgccacatggtaggaaatttaaat
agaataaaaagtttataattctgaaaagtggaacattttttataaagttg
gtagtgatttttcaaacaatgtaacactcttcttctagtgattctcttaa
gtatgtctaaatgagattttgtgggacagaaaatgcataggaatctaaat
aatgcatacatcattgtacatttcatagttatacattttcatttgtaaaa
gagggctagtgcggaggcctacagtgatagaatattctgcagagaaaggg
tgtggcatttgataaggtacacattatcagtagaaggagatttctggaga
aagccagcattacttggcttgcattctaacaagggtagtaactcttcggg
gctaaatgggttgctcagcagccacagcagatttcttatgaggtagcgga
agatgctatgcttaggatgcattgtattgagagataataaataataaata
ataagaagaaaggagcaagtctagtgaaatgtttattaggcctactcact
ggatagtggaattag

gaattctctccctagtttcagaacctcagagtgtgagagatgagaaatga
aatatattatacataaatatttggaagttacagagttaagggtttagaga
tgaaaatagagctattaatagaatttacagtttttcaaaatgaaattgtt
ttaagaaaaacaatttttgaaattgtttgaagaaaaacaattttgtcaaa
ttttatatagctatttaatattttaattctactttcataattttattgtt
cacacaaagtatagaattcaatcctttttagtttattcatgcttatgtga
ccatcatcatagtctgttttcatcttattttcttctgaaagaaatccttt
acttagtagtagtccagtagtatcagtaccccactatatttcagagtagt
tattatttgagactctagaagagattttttttccattctgcataatttat
gtatgtgcaattatataacatatgctctttatgactggtgcctttgctta
gtctaaatttttaaggattatccatgtttttcatgtaccaataacttcct
aattgtcttaattagggtttccactgctgtgaatagacaccatgacaagg
caatgcatataaagggtgacatttatttgaggctaggcttataatttcag
atgttcagtccactgtcatcatggcaggaagcatgacagcaccccggcag
acatggtactgtaggagctaagagttctacatcttgatttgaattcagac
agaagaaaactggtatgggtttcaaagcctacccccaaagtgacccactt
cctgtaacaaggtcacacctactccaataaggccacacctcctaatagtg
ccactccctgggccaagcatattgaaacaaccacactattaatatcaaat
ttccactgaatttacaatattatttgtccattcatctgtcaataaacaat
tgtattatatacttctcctttttatcacttaaatatactgctgtgtgtag
ttttacacaggatttggatttaaaagacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17454099_17455269
seq2: B6Ng01-258F20.b_51_1215

seq1  GAATTCTTTTGGATAACTGCTACCACATGCAAAGTATAGGGAAAAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGATAACTGCTACCACATGCAAAGTATAGGGAAAAAATCC  50

seq1  TTAGACACTCAAGTAGTGCTAGATGAAAGGCAAGGCCACTGTGCCAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACTCAAGTAGTGCTAGATGAAAGGCAAGGCCACTGTGCCAAAAT  100

seq1  GACATGTACAGTCATCACTGTGACCTCCTGGTTTTAAATTTTTTTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTACAGTCATCACTGTGACCTCCTGGTTTTAAATTTTTTTCTGGG  150

seq1  TGCCTCCTTTTGGTATCATCCTACCCATGCTCCTGAGTTTTCACACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTTTTGGTATCATCCTACCCATGCTCCTGAGTTTTCACACATTT  200

seq1  ATATTTTCTCTTCTCCATCTGTTTGTGTACAGGCTTATTTAGGCATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTCTTCTCCATCTGTTTGTGTACAGGCTTATTTAGGCATACAT  250

seq1  GCATTCAAATTTGTGTGTTCATGAGCATCTGTGCACATGCATGCACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAAATTTGTGTGTTCATGAGCATCTGTGCACATGCATGCACATGT  300

seq1  GTGCAGAGGCCAAAAGTCAACCTTGAATATTGATCCTCAGGAGCAAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGGCCAAAAGTCAACCTTGAATATTGATCCTCAGGAGCAAGTCT  350

seq1  ATTCGGCCACCAGTCTCCCCACATATACCTTTCTAGCCTTTCCAGCACCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGCCACCAGTCTCCCCACATATACCTTTCTAGCCTTTCCAGCACCG  400

seq1  AAGTTACAAAATTTACTATTATCCCCAATTGTTTTTTACATTACTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAAATTTACTATTATCCCCAATTGTTTTTTACATTACTTCTGC  450

seq1  ATATTGAATTCAGATATCAATGCATATATGCAAGTAGTGTGCAATCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATTCAGATATCAATGCATATATGCAAGTAGTGTGCAATCTGAC  500

seq1  TATGCTCTCAAGCCCTAGCTTTCTACTTTAATTTCTAGCAAAGTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTCAAGCCCTAGCTTTCTACTTTAATTTCTAGCAAAGTCTTTTT  550

seq1  TTAACAGATTCTTTGCAGCTCATTCACTTCAAAGGAGAAAGTGAAATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGATTCTTTGCAGCTCATTCACTTCAAAGGAGAAAGTGAAATAGA  600

seq1  ACCTCAAACAATTTGTTCTCTCACAATGCCACATGGTAGGAAATTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAACAATTTGTTCTCTCACAATGCCACATGGTAGGAAATTTAAAT  650

seq1  AGAATAAAAAGTTTATAATTCTGAAAAGTGGAACATTTTTTATAAAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAAGTTTATAATTCTGAAAAGTGGAACATTTTTTATAAAGTTG  700

seq1  GTAGTGATTTTTCAAACAATGTAACACTCTTCTTCTAGTGATTCTCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATTTTTCAAACAATGTAACACTCTTCTTCTAGTGATTCTCTTAA  750

seq1  GTATGTCTAAATGAGATTTTGTGGGACAGAAAATGCATAGGAATCTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTAAATGAGATTTTGTGGGACAGAAAATGCATAGGAATCTAAAT  800

seq1  AATGCATACATCATTGTACATTTCATAGTTATACATTTTCATTTGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACATCATTGTACATTTCATAGTTATACATTTTCATTTGTAAAA  850

seq1  GAGGGCTAGTGCGGAGGCCTACAGTGATAGAATATTCTGCAGAG-AAGGG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGGGCTAGTGCGGAGGCCTACAGTGATAGAATATTCTGCAGAGAAAGGG  900

seq1  TGTGGCATTTGATAAGGTACACATTATCAGTAGAAGGAGATTTCTGGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCATTTGATAAGGTACACATTATCAGTAGAAGGAGATTTCTGGAGA  950

seq1  AAGCCAGCATTACTTGGCTTGCATTCTAACAAGGGTAGTAACTCTTCGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCATTACTTGGCTTGCATTCTAACAAGGGTAGTAACTCTTCGGG  1000

seq1  GCTAAATGGTTTGCTCAGCAGCCACAGCAGATTTCTTATGAGGTAGCGGA  1049
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGGGTTGCTCAGCAGCCACAGCAGATTTCTTATGAGGTAGCGGA  1050

seq1  AGAAGGCTATGCTTAGGATGCATTGTA-TGAGAGAATAATAAATAATAAA  1098
      || | |||||||||||||||||||||| |||||| |||||||||||| ||
seq2  AG-ATGCTATGCTTAGGATGCATTGTATTGAGAG-ATAATAAATAAT-AA  1097

seq1  ATAAAATAAAGAAGAAAAGAGCAAAGTCTAGTGAAAATGTTTATTAAG-C  1147
      ||||    ||||||||| |||| |||||||||| |||||||||||| | |
seq2  ATAA---TAAGAAGAAAGGAGC-AAGTCTAGTG-AAATGTTTATTAGGCC  1142

seq1  TACTCACTGATAAGTGGATATTAG  1171
      |||||||||   |||||| |||||
seq2  TACTCACTGGATAGTGGA-ATTAG  1165


seq1: chr5_17556806_17557363
seq2: B6Ng01-258F20.g_65_622 (reverse)

seq1  AGACAATTAGGAAGTTATTGGTACATGAAAAACATGGATAATCCTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTAGGAAGTTATTGGTACATGAAAAACATGGATAATCCTTAAAA  50

seq1  ATTTAGACTAAGCAAAGGCACCAGTCATAAAGAGCATATGTTATATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACTAAGCAAAGGCACCAGTCATAAAGAGCATATGTTATATAATT  100

seq1  GCACATACATAAATTATGCAGAATGGAAAAAAAATCTCTTCTAGAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACATAAATTATGCAGAATGGAAAAAAAATCTCTTCTAGAGTCTC  150

seq1  AAATAATAACTACTCTGAAATATAGTGGGGTACTGATACTACTGGACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAACTACTCTGAAATATAGTGGGGTACTGATACTACTGGACTAC  200

seq1  TACTAAGTAAAGGATTTCTTTCAGAAGAAAATAAGATGAAAACAGACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTAAAGGATTTCTTTCAGAAGAAAATAAGATGAAAACAGACTAT  250

seq1  GATGATGGTCACATAAGCATGAATAAACTAAAAAGGATTGAATTCTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTCACATAAGCATGAATAAACTAAAAAGGATTGAATTCTATAC  300

seq1  TTTGTGTGAACAATAAAATTATGAAAGTAGAATTAAAATATTAAATAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGAACAATAAAATTATGAAAGTAGAATTAAAATATTAAATAGCT  350

seq1  ATATAAAATTTGACAAAATTGTTTTTCTTCAAACAATTTCAAAAATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTTGACAAAATTGTTTTTCTTCAAACAATTTCAAAAATTGTT  400

seq1  TTTCTTAAAACAATTTCATTTTGAAAAACTGTAAATTCTATTAATAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAAACAATTTCATTTTGAAAAACTGTAAATTCTATTAATAGCTC  450

seq1  TATTTTCATCTCTAAACCCTTAACTCTGTAACTTCCAAATATTTATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATCTCTAAACCCTTAACTCTGTAACTTCCAAATATTTATGTAT  500

seq1  AATATATTTCATTTCTCATCTCTCACACTCTGAGGTTCTGAAACTAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTCATTTCTCATCTCTCACACTCTGAGGTTCTGAAACTAGGGA  550

seq1  GAGAATTC  558
      ||||||||
seq2  GAGAATTC  558


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