BAC Information

Click to search

BAC

Clone NameB6Ng01-258I24
Chromosome5 (Build37)
Map Location 60,953,224 - 60,954,318
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC100041498, LOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I24.bB6Ng01-258I24.g
ACCGA063970GA063971
length1,1851,098
definitionB6Ng01-258I24.b B6Ng01-258I24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
tgttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtcacgccgagatattttatatatt
tgtggctattgagaagggtgttgtttcctattctttctcagctgtttatt
ctttgtgtagagaaaggccattgactgttggagttaattttatatccagc
tacttcacggaagcttgttatccaggcaaggagtctctgttgaattttaa
ggtcactatatatcctatcatatcactctgcaaagggtattttgaacttc
tcttatcgaagtggatatccccctgagatctaact

gaattcattaccactgctctattagaatggaaattataaacacaatgaat
gaaaaactcttctcagctcattagtgttaaatattgaaaaatcatcattg
aaatactgtagaatttgcctcaactttcaaagaaattataaaggaaacat
gagtttaattaacaagagttggttaaaattacgagcaggtactcttatag
ttcattaaaatgaagttatgaatttatctttgcatgttaatagagatggt
gctaaatatcttatcatttacatataaactatataggagtatgcagtgtg
ttgtgtgtgtgtgtgtgtgtgtgtctgtgcacagttgcacacatgcatat
ctgtgtatgtgcatgtgtttttctgaagcctatttggaagttcgtaagct
aaaggaatgcttgaatttattaagacaattataaaacatcacctcttcat
ctgtagtgaatttcatagaactggggatgtttatggaagtttgaagacta
ccagtagcataaagctacttttagaaagaaattctgaccagtctcaaatc
aatgagtgaggaaaggtgcaaaagtgtgcagtgggttgttcccattggtg
taaatgtaaatgccacttttatttcaacagtggatggattctgatgagag
ctgaacccaaacttttcagaaccatggcctgggatgagctcagatatttc
tatctctgtttctaattatccctagtcctagggctagaagcctctagctt
ccatataccctccatctgctaacctaagtattgaaggttttagcctctga
atatgctcacacttttctaggtctttctgaactctgtctgcctacttgta
accgactgttctggctcaaagtcctctcctagctgactgattcatttcta
gcttctctcaacttctgactgggattgctcttcttgacttcaactaatcc
tggaaatttgttgtaattttctggctttttcctcctctgtgtttcaacta
cttctacatgatctccagttcttgcattcacttcacaggactgtcatcaa
ctcaacttcacctcactggactgggaattccttcctgcactgccccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60953224_60954318
seq2: B6Ng01-258I24.g_64_1161

seq1  GAATTCATTACCACTGCTCTATTAGAATGGAAATTATAAACACAATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCACTGCTCTATTAGAATGGAAATTATAAACACAATGAAT  50

seq1  GAAAAACTCTTCTCAGCTCATTAGTGTTAAATATTGAAAAATCATCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTCTTCTCAGCTCATTAGTGTTAAATATTGAAAAATCATCATTG  100

seq1  AAATACTGTAGAATTTGCCTCAACTTTCAAAGAAATTATAAAGGAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGTAGAATTTGCCTCAACTTTCAAAGAAATTATAAAGGAAACAT  150

seq1  GAGTTTAATTAACAAGAGTTGGTTAAAATTACGAGCAGGTACTCTTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAATTAACAAGAGTTGGTTAAAATTACGAGCAGGTACTCTTATAG  200

seq1  TTCATTAAAATGAAGTTATGAATTTATCTTTGCATGTTAATAGAGATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAAATGAAGTTATGAATTTATCTTTGCATGTTAATAGAGATGGT  250

seq1  GCTAAATATCTTATCATTTACATATAAACTATATAGGAGTATGCAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATATCTTATCATTTACATATAAACTATATAGGAGTATGCAGTGTG  300

seq1  TTGTGTGTGTGTGTGTGTGTGTGTCTGTGCACAGTTGCACACATGCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGTGTGTGTGTCTGTGCACAGTTGCACACATGCATAT  350

seq1  CTGTGTATGTGCATGTGTTTTTCTGAAGCCTATTTGGAAGTTCGTAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGTGCATGTGTTTTTCTGAAGCCTATTTGGAAGTTCGTAAGCT  400

seq1  AAAGGAATGCTTGAATTTATTAAGACAATTATAAAACATCACCTCTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATGCTTGAATTTATTAAGACAATTATAAAACATCACCTCTTCAT  450

seq1  CTGTAGTGAATTTCATAGAACTGGGGATGTTTATGGAAGTTTGAAGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGAATTTCATAGAACTGGGGATGTTTATGGAAGTTTGAAGACTA  500

seq1  CCAGTAGCATAAAGCTACTTTTAGAAAGAAATTCTGACCAGTCTCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGCATAAAGCTACTTTTAGAAAGAAATTCTGACCAGTCTCAAATC  550

seq1  AATGAGTGAGGAAAGGTGCAAAAGTGTGCAGTGGGTTGTTCCCATTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGAGGAAAGGTGCAAAAGTGTGCAGTGGGTTGTTCCCATTGGTG  600

seq1  TAAATGTAAATGCCACTTTTATTTCAACAGTGGATGGATTCTGATGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAATGCCACTTTTATTTCAACAGTGGATGGATTCTGATGAGAG  650

seq1  CTGAACCCAAACTTTTCAGAACCATGGCCTGGGATGAGCTCAGATATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCAAACTTTTCAGAACCATGGCCTGGGATGAGCTCAGATATTTC  700

seq1  TATCTCTG-TTCTAATTATCCCTAGTCCTAGGGCTAGAAGCCTCTAGCTT  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGTTTCTAATTATCCCTAGTCCTAGGGCTAGAAGCCTCTAGCTT  750

seq1  CCATATACCCTCCATCTGCTAACCTAAGTATTGAAGGTTTTAGCCTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACCCTCCATCTGCTAACCTAAGTATTGAAGGTTTTAGCCTCTGA  800

seq1  ATATGCTCACAC-TTTCTAGGTCTTTCTGAACTCTGTCTGCCTACTTGTA  848
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATATGCTCACACTTTTCTAGGTCTTTCTGAACTCTGTCTGCCTACTTGTA  850

seq1  ACCGACTGTTCTGGCTCAAAGTCCTCTCCTAGCTGACTGATTCA-TTCTA  897
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCGACTGTTCTGGCTCAAAGTCCTCTCCTAGCTGACTGATTCATTTCTA  900

seq1  GCTTCTCTCAACTTCTGACT-GGATTGCTCTTCTTGACTTCAAACTAATC  946
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  GCTTCTCTCAACTTCTGACTGGGATTGCTCTTCTTGACTTC-AACTAATC  949

seq1  CTGGAAATTTGTTGTAATTTTCTGGCTTTTTCCTCTTCTGTGGTTTCAAC  996
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  CTGGAAATTTGTTGTAATTTTCTGGCTTTTTCCTCCTCTGT-GTTTCAAC  998

seq1  TACTTCTACATGATCTCCAGTTTTCTGCATTCACTCAACAGAACTG-CAT  1045
      |||||||||||||||||||||| | ||||||||||  |||| |||| |||
seq2  TACTTCTACATGATCTCCAGTTCT-TGCATTCACTTCACAGGACTGTCAT  1047

seq1  CAAACTCAACTCCACTCAACTGAACTGG--ATCTCTTCCTGCACTGCCCC  1093
      | ||||||||| |||   |||| |||||  ||  ||||||||||||||||
seq2  C-AACTCAACTTCACCTCACTGGACTGGGAATTCCTTCCTGCACTGCCCC  1096

seq1  TA  1095
      ||
seq2  TA  1098


| Home | SequenceCutter | Blast | Download |