BAC Information

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BAC

Clone NameB6Ng01-258K03
Chromosome5 (Build37)
Map Location 48,561,065 - 48,653,413
singlet/doubletdoublet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258K03.bB6Ng01-258K03.g
ACCGA064024GA064025
length1,1961,122
definitionB6Ng01-258K03.b B6Ng01-258K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,561,065 - 48,562,273)(48,652,291 - 48,653,413)
sequence
gaattccatagggtccccttgaaattatgaaaaaaatctgtttgtcctaa
tgaaatattttacgctacaaaattaagtccactattatattaaaatacaa
tatcttgtaatagaacaaagaattaaaatatttaatccaatctctaaatt
atattagaattacaaattatttgtgtagttatttgcttcgcagttaacta
ttttgccttttttgtgtggtacagggtactttttcttggtctaatttttg
gttttctattccgtattttggttaaatgaaacataaaatataatttctta
actctatttctccttcattttgtttctagtgatctcagtgaaaatcaaat
tcaagcaattccaaggaaggctttccgtggggcagttgacattaaaaacc
tgtaagtatagaagtataccttaatttttagtgctttataaattatcata
tgttttggggtcatgtttacatttttaaaactatcagaaaatgaaatact
gataaagctttcttcttgttttgaagatacttcaacggaaacataaaagt
ttgcctttgtaaggcatttgggcaactcaagtcattatacaatttattct
tcaatgtggcgattaatgtttttaaatttttcagaaaaatggagggtttt
ttccaagtcctttcttattctctttgtagtttctggcagggtatgctgaa
agcacagcaaataaactgtttattttcttttgtaaagcatacatagtatt
ttccaactaaagataaagatagctcagaactgcacttttttttctggagt
ttttagatgttaaaagtattttttaaaaatgataaattccccttttcatt
catgtgtctttttctcgcatcctttgccttgcatctgtgaaggacaagat
gaattagcaccccttataataaggagaggagaaaacccgtatttctttac
ttttcttgataaatctttatctgctttcttgcaaggtgtttaagtgcctt
ttgcttctcaaactgcctggcaatacaagctctctcagcggcaacctata
ttctcatatattattcttttattcatttccaaaaatacccttgttagtct
ttgaaatgacctttcaatttatttcaaatgtggagtaatgtttcttagca
ttacggatctagattatggatgaaggcgttgtttatcaagataact

gaattctagaatcagacttatgcttccctgtcagcaaaggtcacctatgt
gcctccaacctcagaatctgcagacgctagtttgacattttgtaactaca
ctcacttcaaatgtgcacaaaagtctacagttaagagatgatttatgaat
tcatcccatttagttatcttctctgttgccaagttttcaaatccttttta
acccaggggactcagtccaacgtaataaaggtagcatctctctgctctat
gccttaagcagtcttcagatcaatatttttcttgagcctttgcccaaatt
aaggcaaagcaacatttgtaatggctacaagtaaaaagagtaatggtgtt
taggttcatcttcagagccaggtggtttatgacagagagtcagggtaggg
tccttcatgacaacttttatgaatgccacattttgtcaaacaatgggttt
agttaagttttgaattcttaaaatagagtgaaaagaatgaaacctgacat
agttggataaggggggttgcatccaactctcagaggagtgaacatggaac
tgaattctgtaggaaggctcacaagagtttggaactgaagtggagcaggt
aagagaaacagtcaaaaattgttatgactcatcagaataaaaagtaggaa
actgaaagccaatgcagcaggacatgctccaaactgagttggatgtgttg
caacgctatgcaaattatcacagaaagacatacaaggaccttaacaaaca
tgtgatctcttatcttgcctttgttaaaccagaaagagtatatagactcc
tggtttctgtacccagaataatatagagaactttaatagtcttgcaatgc
ttgggatcccaacttctctggtaaaatcaaataaagtggcttaccaatgt
ctcaaaaaatatgtgagttctaagccttttctatcacctgaacagtgacg
gagatagaaagcatcttagggatgactaagaaactttcttatttaatata
ctaaacttcctacagcatataaaatatctggtccagtagatcttagattt
acagctttgtataaaggtttaaatctatgccaacaggctagtggaagaat
ttctgacatggtgatagatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48561065_48562273
seq2: B6Ng01-258K03.b_43_1238

seq1  GAATTCCATAGGGTCCCCTTGAAATTATGAAAAAAATCTGTTTGTCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGGGTCCCCTTGAAATTATGAAAAAAATCTGTTTGTCCTAA  50

seq1  TGAAATATTTTACGCTACAAAATTAAGTCCACTATTATATTAAAATACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTTTACGCTACAAAATTAAGTCCACTATTATATTAAAATACAA  100

seq1  TATCTTGTAATAGAACAAAGAATTAAAATATTTAATCCAATCTCTAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTAATAGAACAAAGAATTAAAATATTTAATCCAATCTCTAAATT  150

seq1  ATATTAGAATTACAAATTATTTGTGTAGTTATTTGCTTCGCAGTTAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAATTACAAATTATTTGTGTAGTTATTTGCTTCGCAGTTAACTA  200

seq1  TTTTGCCTTTTTTGTGTGGTACAGGGTACTTTTTCTTGGTCTAATTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTTTTTTGTGTGGTACAGGGTACTTTTTCTTGGTCTAATTTTTG  250

seq1  GTTTTCTATTCCGTATTTTGGTTAAATGAAACATAAAATATAATTTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATTCCGTATTTTGGTTAAATGAAACATAAAATATAATTTCTTA  300

seq1  ACTCTATTTCTCCTTCATTTTGTTTCTAGTGATCTCAGTGAAAATCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTTCTCCTTCATTTTGTTTCTAGTGATCTCAGTGAAAATCAAAT  350

seq1  TCAAGCAATTCCAAGGAAGGCTTTCCGTGGGGCAGTTGACATTAAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAATTCCAAGGAAGGCTTTCCGTGGGGCAGTTGACATTAAAAACC  400

seq1  TGTAAGTATAGAAGTATACCTTAATTTTTAGTGCTTTATAAATTATCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATAGAAGTATACCTTAATTTTTAGTGCTTTATAAATTATCATA  450

seq1  TGTTTTGGGGTCATGTTTACATTTTTAAAACTATCAGAAAATGAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGGGTCATGTTTACATTTTTAAAACTATCAGAAAATGAAATACT  500

seq1  GATAAAGCTTTCTTCTTGTTTTGAAGATACTTCAACGGAAACATAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGCTTTCTTCTTGTTTTGAAGATACTTCAACGGAAACATAAAAGT  550

seq1  TTGCCTTTGTAAGGCATTTGGGCAACTCAAGTCATTATACAATTTATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGTAAGGCATTTGGGCAACTCAAGTCATTATACAATTTATTCT  600

seq1  TCAATGTGGCGATTAATGTTTTTAAATTTTTCAGAAAAATGGAGGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGGCGATTAATGTTTTTAAATTTTTCAGAAAAATGGAGGGTTTT  650

seq1  TTCCAAGTCCTTTCTTATTCTCTTTGTAGTTTCTGGCAGGGTATGCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTCCTTTCTTATTCTCTTTGTAGTTTCTGGCAGGGTATGCTGAA  700

seq1  AGCACAGCAAATAAACTGTTTATTTTCTTTTGTAAAGCATACATAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCAAATAAACTGTTTATTTTCTTTTGTAAAGCATACATAGTATT  750

seq1  TTCCAACTAAAGATAAAGATAGCTCAGAACTGCACTTTTTTTTCTGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTAAAGATAAAGATAGCTCAGAACTGCACTTTTTTTTCTGGAGT  800

seq1  TTTTAGATGTTAAAAGTATTTTTTAAAAATGATAAATTCCCCTTTTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATGTTAAAAGTATTTTTTAAAAATGATAAATTCCCCTTTTCATT  850

seq1  CATGTGTCTTTTTCTCGCATCCTTTGCCTTGCATCTGTGAAGGACAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCTTTTTCTCGCATCCTTTGCCTTGCATCTGTGAAGGACAAGAT  900

seq1  GAATTAGCACCCCTTATAATAAGGAAGAGGAGAAAACCCGTATTTCTTTA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAATTAGCACCCCTTATAATAAGG-AGAGGAGAAAACCCGTATTTCTTTA  949

seq1  CTTTTCTTGATAAATCTTTAATCTGCTTTCTTGCAAGGTGTTTAAGTGCC  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTTCTTGATAAATCTTT-ATCTGCTTTCTTGCAAGGTGTTTAAGTGCC  998

seq1  TTTTGC-TCTCAAACTGCCTGGGCAATACAAG--CTCTCAGCGGCAAACC  1047
      |||||| ||||||||||||| |||||||||||  ||||||||||| ||||
seq2  TTTTGCTTCTCAAACTGCCT-GGCAATACAAGCTCTCTCAGCGGC-AACC  1046

seq1  TAATATTCTCA-ATATATATCTTT--ATCAATTCC-AAAATACCC-TGTT  1092
      | ||||||||| ||||   |||||   ||| |||| ||||||||| ||||
seq2  T-ATATTCTCATATATTATTCTTTTATTCATTTCCAAAAATACCCTTGTT  1095

seq1  AGTCTTTTAAAATGACTTTTCAATTTATTTCAAATGTTGGGGGTTAAAAT  1142
      |||| ||| ||||||| ||||||||||||||||||||  || ||   |||
seq2  AGTC-TTTGAAATGACCTTTCAATTTATTTCAAATGT--GGAGT---AAT  1139

seq1  GTTTTCCTTAGCTATTACAGTATCTTAGGATATATGGATGAAGGGCCCCT  1192
      ||||  |||||| ||||| | ||||   ||| ||||||||||||  |  |
seq2  GTTT--CTTAGC-ATTAC-GGATCT--AGAT-TATGGATGAAGG--CGTT  1180

seq1  GTGTATCAAGAGTAACT  1209
      || |||||||| |||||
seq2  GTTTATCAAGA-TAACT  1196


seq1: chr5_48652291_48653413
seq2: B6Ng01-258K03.g_66_1187 (reverse)

seq1  GTCATCTTTATCA-CATGTCAGATA-TCTTCCACTAGCTTGTGGCCATAG  48
      ||||||  ||||| ||||||||| | |||||||||||| ||| | |||||
seq2  GTCATC--TATCACCATGTCAGAAATTCTTCCACTAGCCTGTTGGCATAG  48

seq1  ATTTAAAACCTTTATACAAAGCCTGTAAATCTAAGATCTACTGGACCAGA  98
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTT-AAACCTTTATACAAAG-CTGTAAATCTAAGATCTACTGGACCAGA  96

seq1  TA-TTTATATGCCTGTAGGAAGTTTAGTATA-TAAATAAGAAAGTTTCTT  146
      || |||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TATTTTATATG-CTGTAGGAAGTTTAGTATATTAAATAAGAAAGTTTCTT  145

seq1  AGTCATCCCTAAGATGCTTTCTATCTCCGTCACTGTTCAGGTGATAGAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCCTAAGATGCTTTCTATCTCCGTCACTGTTCAGGTGATAGAAA  195

seq1  AGGCTTAGAACTCACATATTTTTTGAGACATTGGTAAGCCACTTTATTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGAACTCACATATTTTTTGAGACATTGGTAAGCCACTTTATTTG  245

seq1  ATTTTACCAGAGAAGTTGGGATCCCAAGCATTGCAAGACTATTAAAGTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCAGAGAAGTTGGGATCCCAAGCATTGCAAGACTATTAAAGTTC  295

seq1  TCTATATTATTCTGGGTACAGAAACCAGGAGTCTATATACTCTTTCTGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTATTCTGGGTACAGAAACCAGGAGTCTATATACTCTTTCTGGT  345

seq1  TTAACAAAGGCAAGATAAGAGATCACATGTTTGTTAAGGTCCTTGTATGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAGGCAAGATAAGAGATCACATGTTTGTTAAGGTCCTTGTATGT  395

seq1  CTTTCTGTGATAATTTGCATAGCGTTGCAACACATCCAACTCAGTTTGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGATAATTTGCATAGCGTTGCAACACATCCAACTCAGTTTGGA  445

seq1  GCATGTCCTGCTGCATTGGCTTTCAGTTTCCTACTTTTTATTCTGATGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCTGCTGCATTGGCTTTCAGTTTCCTACTTTTTATTCTGATGAG  495

seq1  TCATAACAATTTTTGACTGTTTCTCTTACCTGCTCCACTTCAGTTCCAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAATTTTTGACTGTTTCTCTTACCTGCTCCACTTCAGTTCCAAA  545

seq1  CTCTTGTGAGCCTTCCTACAGAATTCAGTTCCATGTTCACTCCTCTGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGAGCCTTCCTACAGAATTCAGTTCCATGTTCACTCCTCTGAGA  595

seq1  GTTGGATGCAACCCCCCTTATCCAACTATGTCAGGTTTCATTCTTTTCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGCAACCCCCCTTATCCAACTATGTCAGGTTTCATTCTTTTCAC  645

seq1  TCTATTTTAAGAATTCAAAACTTAACTAAACCCATTGTTTGACAAAATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTAAGAATTCAAAACTTAACTAAACCCATTGTTTGACAAAATGT  695

seq1  GGCATTCATAAAAGTTGTCATGAAGGACCCTACCCTGACTCTCTGTCATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCATAAAAGTTGTCATGAAGGACCCTACCCTGACTCTCTGTCATA  745

seq1  AACCACCTGGCTCTGAAGATGAACCTAAACACCATTACTCTTTTTACTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGGCTCTGAAGATGAACCTAAACACCATTACTCTTTTTACTTG  795

seq1  TAGCCATTACAAATGTTGCTTTGCCTTAATTTGGGCAAAGGCTCAAGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTACAAATGTTGCTTTGCCTTAATTTGGGCAAAGGCTCAAGAAA  845

seq1  AATATTGATCTGAAGACTGCTTAAGGCATAGAGCAGAGAGATGCTACCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATCTGAAGACTGCTTAAGGCATAGAGCAGAGAGATGCTACCTT  895

seq1  TATTACGTTGGACTGAGTCCCCTGGGTTAAAAAGGATTTGAAAACTTGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACGTTGGACTGAGTCCCCTGGGTTAAAAAGGATTTGAAAACTTGGC  945

seq1  AACAGAGAAGATAACTAAATGGGATGAATTCATAAATCATCTCTTAACTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAGATAACTAAATGGGATGAATTCATAAATCATCTCTTAACTG  995

seq1  TAGACTTTTGTGCACATTTGAAGTGAGTGTAGTTACAAAATGTCAAACTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTTGTGCACATTTGAAGTGAGTGTAGTTACAAAATGTCAAACTA  1045

seq1  GCGTCTGCAGATTCTGAGGTTGGAGGCACATAGGTGACCTTTGCTGACAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGCAGATTCTGAGGTTGGAGGCACATAGGTGACCTTTGCTGACAG  1095

seq1  GGAAGCATAAGTCTGATTCTAGAATTC  1123
      |||||||||||||||||||||||||||
seq2  GGAAGCATAAGTCTGATTCTAGAATTC  1122


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