BAC Information

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BAC

Clone NameB6Ng01-259B16
Chromosome5 (Build37)
Map Location 43,589,138 - 43,735,970
singlet/doubletdoublet
Overlap geneCpeb2
Upstream geneEG636612, LOC433883, EG665934
Downstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259B16.bB6Ng01-259B16.g
ACCGA064376GA064377
length1,1891,121
definitionB6Ng01-259B16.b B6Ng01-259B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,589,138 - 43,590,327)(43,734,837 - 43,735,970)
sequence
gaattctcctattgaggatttttggtgctgctagtattattttgttagtt
tgagattattgtagttttcagttttaaaagttgttttatttatttatttt
tttgtagttcctgttcctttgtgagcattatttttatttccctttattta
aagcatgttccagtcactcagtgaaacattttatacatagcctctttagg
tttctcttcatttgaatggagaggatggaaaaatattgtcagtatactga
aagaaagaacaataaaagttgccacagaacagagagaaaatgacataaga
gaaagaaacttggaggcaagggacttcatgactaaaataaaggctctaac
atttatgttgacagaatagagaaaaaacttgactaaactaaaactgtagt
gactggaagctttctgaagactgacataaccattatcttgctgtcaatat
gtcattatctttgtccacttatgtgatattttcttgggtcctagtgtcat
gaataaggtcaagttggacctgaacacttaaggtattttggtaagaaatt
ggtaattttatttcaatgctcaatgttgcctcaattcctgtaatattttg
tcacagaataaataatgtctcctactctctagttccctgttgcttccctc
tggctgaaccagtctcttcactgagagaaaagtaagactaccaactcttc
aataggtttctctcctattactatatattattttatttatattatattta
tttatattatatattatattatattaacccaatgagagctgcaagactga
cttagcacttctcatttcagtggttatccaaccacatccttattggatgc
aactgaaggctggaagctcccactagatatcctctgacatgaggcagtgg
gcgacagagtagatccagttctcgttattggtggaactctaagacacaga
gactgaactgtccactctgggtgctggggattgtattatacattgaggtt
attattgttcctgacagctcatgtatttaaacattttggtgctctgctac
tgatgctgtttcagagggttgtaggaccccttgagagtgggactcactta
gtgaaagcaagtttacttaaacagatgcttcgtcaggcctgtgttatagt
ctggccgagtctaacacctccttccccccaccacttttg
gaattcaaggcatgaacctgtaggcaggaaatggatcaaagacaatggag
gaatgcagctcactggcttgctcctcatgacttacttggcctgatttctc
tgcctagggtgtcataccactcccagggcaatcccacatcagtcattaac
caataaaacaccccacagatttgcctacaggccaatctgatagagacatt
ctcatgtctgaggttttcttctcccagttgactaacttgtgtaaagtaaa
caaaacaaagaaacaaaaaaactaagattatttagttattatttttaaaa
aactaacaaaaaatggcacaatatttcacaaaaatgtcatgtcagaatac
agacatttcacatctcacaatataggcctatcagaaatgctgaaaataca
cactttcccacttagacacttgacctcatggggtcatcactaattttaac
ctctaagagtacaaaatacagagaataagcttacctcataagttcatgat
acatattaggtgaaagcatgtttacagtactaggcccataggaaatgctc
aataactctacaattatcttgtttttacgaggtagggtgggaagagaggg
aaatgacttctctaatggttagggatgtgaaaacagccaactctgactga
ccttagcagttgggggaagataatactaaacacttggtgtgaaagctttc
catcactgtagcaaaatacctgaggtaatcaatttaggaacaagaacagt
ttcttttgacttgctgcgtttggagggatttcagtcagtggtcagttggc
tccattgcttatggcaaggcagcacacactagtggagcacatggagcgag
gggactgctcactccctggcagccaggaagcaatgagggagagggttagg
gggtcaggtctcaacattacttatgaaggcgtgtcagctatgacctaatt
tcttaccactaaaaagaatgttctagctaaaaggtcaaaccatctcctaa
gggttctagtacctcatgtacacttatgttctggagcacattggcctttg
ggtgttatcagacatagcactgtccacatctatacagcctaacgtgtttt
cttgatactcagcagcagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43589138_43590327
seq2: B6Ng01-259B16.b_44_1232

seq1  GAATTCTCCTATTGAGGATTTTTGGTGCTGCTAGTATTATTTTGTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATTGAGGATTTTTGGTGCTGCTAGTATTATTTTGTTAGTT  50

seq1  TGAGATTATTGTAGTTTTCAGTTTTAAAAGTTGTTTTATTTATTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATTGTAGTTTTCAGTTTTAAAAGTTGTTTTATTTATTTATTTT  100

seq1  TTTGTAGTTCCTGTTCCTTTGTGAGCATTATTTTTATTTCCCTTTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTTCCTGTTCCTTTGTGAGCATTATTTTTATTTCCCTTTATTTA  150

seq1  AAGCATGTTCCAGTCACTCAGTGAAACATTTTATACATAGCCTCTTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTTCCAGTCACTCAGTGAAACATTTTATACATAGCCTCTTTAGG  200

seq1  TTTCTCTTCATTTGAATGGAGAGGATGGAAAAATATTGTCAGTATACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCATTTGAATGGAGAGGATGGAAAAATATTGTCAGTATACTGA  250

seq1  AAGAAAGAACAATAAAAGTTGCCACAGAACAGAGAGAAAATGACATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAACAATAAAAGTTGCCACAGAACAGAGAGAAAATGACATAAGA  300

seq1  GAAAGAAACTTGGAGGCAAGGGACTTCATGACTAAAATAAAGGCTCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACTTGGAGGCAAGGGACTTCATGACTAAAATAAAGGCTCTAAC  350

seq1  ATTTATGTTGACAGAATAGAGAAAAAACTTGACTAAACTAAAACTGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTGACAGAATAGAGAAAAAACTTGACTAAACTAAAACTGTAGT  400

seq1  GACTGGAAGCTTTCTGAAGACTGACATAACCATTATCTTGCTGTCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGCTTTCTGAAGACTGACATAACCATTATCTTGCTGTCAATAT  450

seq1  GTCATTATCTTTGTCCACTTATGTGATATTTTCTTGGGTCCTAGTGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTATCTTTGTCCACTTATGTGATATTTTCTTGGGTCCTAGTGTCAT  500

seq1  GAATAAGGTCAAGTTGGACCTGAACACTTAAGGTATTTTGGTAAGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGTCAAGTTGGACCTGAACACTTAAGGTATTTTGGTAAGAAATT  550

seq1  GGTAATTTTATTTCAATGCTCAATGTTGCCTCAATTCCTGTAATATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTTATTTCAATGCTCAATGTTGCCTCAATTCCTGTAATATTTTG  600

seq1  TCACAGAATAAATAATGTCTCCTACTCTCTAGTTCCCTGTTGCTTCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAATAAATAATGTCTCCTACTCTCTAGTTCCCTGTTGCTTCCCTC  650

seq1  TGGCTGAACCAGTCTCTTCACTGAGAGAAAAGTAAGACTACCAACTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAACCAGTCTCTTCACTGAGAGAAAAGTAAGACTACCAACTCTTC  700

seq1  AATAGGTTTCTCTCCTATTACTATATATTATTTTATTTATATTATATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTTCTCTCCTATTACTATATATTATTTTATTTATATTATATTTA  750

seq1  TTTATATTATATATTATATTATATTAACCCAATGAGAGCTGCAAGACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATATATTATATTATATTAACCCAATGAGAGCTGCAAGACTGA  800

seq1  CTTAGCACTTCTCATTTCAGTGGTTATCCAACCACATCCTTATTGGATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTTCTCATTTCAGTGGTTATCCAACCACATCCTTATTGGATGC  850

seq1  AACTGAAGGCTGGAAGCT-CCACTAGATATCCTCTGACATGAGGCAGTGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACTGAAGGCTGGAAGCTCCCACTAGATATCCTCTGACATGAGGCAGTGG  900

seq1  GCGACAGAGTAGATCCAGTTCTCGTTA-TGGTGGAACTCTAAGACACAGA  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCGACAGAGTAGATCCAGTTCTCGTTATTGGTGGAACTCTAAGACACAGA  950

seq1  GACTGAACTGT-CACTCTGGGTGCTGGGGA-TGTATTATACATTGAGGTT  996
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  GACTGAACTGTCCACTCTGGGTGCTGGGGATTGTATTATACATTGAGGTT  1000

seq1  A-TAATGTTCCTGACAGGCTCATGTATTTAAACA-TTTGGTGCTCTGCTA  1044
      | || ||||||||||| ||||||||||||||||| |||||||||||||||
seq2  ATTATTGTTCCTGACA-GCTCATGTATTTAAACATTTTGGTGCTCTGCTA  1049

seq1  CTGATGCTGTTTCAGAGGGTTGTA-GAACCCTTGAGAGGTGGGACTCAAC  1093
      |||||||||||||||||||||||| || ||||||||| ||||||||||  
seq2  CTGATGCTGTTTCAGAGGGTTGTAGGACCCCTTGAGA-GTGGGACTCACT  1098

seq1  TAGAGAAAGC-AGGTTACTTAAACAGGGAAGGCTTCGGCAGGCCTTGTGG  1142
      ||| |||||| || ||||||||||||   | |||||| |||||| |||| 
seq2  TAGTGAAAGCAAGTTTACTTAAACAG---ATGCTTCGTCAGGCC-TGTG-  1143

seq1  TTAATAGTCCTGCCGAAGTTCTAACACTCCCTTCCCCCCACC-TTTTTG  1190
       | ||||||  |||||   ||||||||  |||||||||||||  |||||
seq2  -TTATAGTCTGGCCGA--GTCTAACACCTCCTTCCCCCCACCACTTTTG  1189

seq1: chr5_43734837_43735970
seq2: B6Ng01-259B16.g_65_1185 (reverse)

seq1  AGACTGCTGCTGAGTATTCAAAGAAAACACGTTTTAGCTGTATTAGAATG  50
      |||||||||||||||||   ||||||||||| ||  |||||| ||| |||
seq2  AGACTGCTGCTGAGTAT--CAAGAAAACACG-TTAGGCTGTA-TAG-ATG  45

seq1  TGACAAGTGCTATGGTCTGAATAACACCCAAAGGCCAATGTTGCTCCCAG  100
      ||   |||||||| ||||| |||||||||||||||||||| |||| ||||
seq2  TGGACAGTGCTAT-GTCTG-ATAACACCCAAAGGCCAATG-TGCT-CCAG  91

seq1  AACATAGTTGTACCATGAGGTACTAGAACCCTTAGGAGATGGTTTGACCC  150
      ||||||  |||| |||||||||||||||||||||||||||||||||| ||
seq2  AACATAAGTGTA-CATGAGGTACTAGAACCCTTAGGAGATGGTTTGA-CC  139

seq1  TTTTAGCTAGAACCTTCTTTTTTAGTGGTAAGAAATTAGGTCATAGCTGA  200
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  TTTTAGCTAGAACATTC-TTTTTAGTGGTAAGAAATTAGGTCATAGCTGA  188

seq1  CACGCCTTCATAAGTAATGTTGAGACCCTGACCCCCTAACCCTCTCCCTC  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACGCCTTCATAAGTAATGTTGAGA-CCTGACCCCCTAACCCTCTCCCTC  237

seq1  ATTGCTTCCTGGCTGCCAGGGAGTGAGCAGTCCCCTCGCTCCATGTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCCTGGCTGCCAGGGAGTGAGCAGTCCCCTCGCTCCATGTGCTC  287

seq1  CACTAGTGTGTGCTGCCTTGCCATAAGCAATGGAGCCAACTGACCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGTGTGCTGCCTTGCCATAAGCAATGGAGCCAACTGACCACTGA  337

seq1  CTGAAATCCCTCCAAACGCAGCAAGTCAAAAGAAACTGTTCTTGTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCCCTCCAAACGCAGCAAGTCAAAAGAAACTGTTCTTGTTCCTA  387

seq1  AATTGATTACCTCAGGTATTTTGCTACAGTGATGGAAAGCTTTCACACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTACCTCAGGTATTTTGCTACAGTGATGGAAAGCTTTCACACCA  437

seq1  AGTGTTTAGTATTATCTTCCCCCAACTGCTAAGGTCAGTCAGAGTTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTAGTATTATCTTCCCCCAACTGCTAAGGTCAGTCAGAGTTGGCT  487

seq1  GTTTTCACATCCCTAACCATTAGAGAAGTCATTTCCCTCTCTTCCCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACATCCCTAACCATTAGAGAAGTCATTTCCCTCTCTTCCCACCC  537

seq1  TACCTCGTAAAAACAAGATAATTGTAGAGTTATTGAGCATTTCCTATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCGTAAAAACAAGATAATTGTAGAGTTATTGAGCATTTCCTATGGG  587

seq1  CCTAGTACTGTAAACATGCTTTCACCTAATATGTATCATGAACTTATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTACTGTAAACATGCTTTCACCTAATATGTATCATGAACTTATGAG  637

seq1  GTAAGCTTATTCTCTGTATTTTGTACTCTTAGAGGTTAAAATTAGTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTATTCTCTGTATTTTGTACTCTTAGAGGTTAAAATTAGTGATG  687

seq1  ACCCCATGAGGTCAAGTGTCTAAGTGGGAAAGTGTGTATTTTCAGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGAGGTCAAGTGTCTAAGTGGGAAAGTGTGTATTTTCAGCATTT  737

seq1  CTGATAGGCCTATATTGTGAGATGTGAAATGTCTGTATTCTGACATGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGCCTATATTGTGAGATGTGAAATGTCTGTATTCTGACATGACA  787

seq1  TTTTTGTGAAATATTGTGCCATTTTTTGTTAGTTTTTTAAAAATAATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGAAATATTGTGCCATTTTTTGTTAGTTTTTTAAAAATAATAAC  837

seq1  TAAATAATCTTAGTTTTTTTGTTTCTTTGTTTTGTTTACTTTACACAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCTTAGTTTTTTTGTTTCTTTGTTTTGTTTACTTTACACAAGT  887

seq1  TAGTCAACTGGGAGAAGAAAACCTCAGACATGAGAATGTCTCTATCAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAACTGGGAGAAGAAAACCTCAGACATGAGAATGTCTCTATCAGAT  937

seq1  TGGCCTGTAGGCAAATCTGTGGGGTGTTTTATTGGTTAATGACTGATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTAGGCAAATCTGTGGGGTGTTTTATTGGTTAATGACTGATGTG  987

seq1  GGATTGCCCTGGGAGTGGTATGACACCCTAGGCAGAGAAATCAGGCCAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCCCTGGGAGTGGTATGACACCCTAGGCAGAGAAATCAGGCCAAG  1037

seq1  TAAGTCATGAGGAGCAAGCCAGTGAGCTGCATTCCTCCATTGTCTTTGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATGAGGAGCAAGCCAGTGAGCTGCATTCCTCCATTGTCTTTGAT  1087

seq1  CCATTTCCTGCCTACAGGTTCATGCCTTGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTGCCTACAGGTTCATGCCTTGAATTC  1121