BAC Information

Click to search

BAC

Clone NameB6Ng01-259F23
Chromosome1 (Build37)5 (Build37)
Map Location 23,830,745 - 23,831,49890,670,082 - 90,670,351
singlet/doubletsingletsinglet
Overlap geneB3gat2
Upstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneSmap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259F23.bB6Ng01-259F23.g
ACCGA064568GA064569
length759853
definitionB6Ng01-259F23.b B6Ng01-259F23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,830,745 - 23,831,498)(90,670,082 - 90,670,351)
sequence
gaattccctgcctggagttcagtggtcacaagtgtgtgaaagccaggaaa
agggggcctttgtttagggagaatagagctgcctgagattgtatccaggg
gacagtcacctcacctggccacagaagcggttgggggaggagccagggaa
gattgaaccagcagagaggatagaccaaggaagggagagatcacaagacc
caactcaattggtagcatgcaataggaaatgtatttggggctaaattttg
tgtacacagagcatctgtttcatcagattcaggacagatgtggtacaaga
ggtggcacttgagagtcaccttattctgctggctcggagcaaacagggat
cagtctcaatgggacgcatcttgggaacaacagatggggaaaggcaacag
gggtcaaaccatgaggacttagtgacgatgcagtacaatgccctgtgctt
agtggagagtctgaaatgcttcaaataggcaacttgtgttattagacata
tatttgcagccacatcagcagatacagtgtgaatgatggctgtggctgat
gactctgcagctctctgggtaggagagagatgaggacagggtaggaggta
agaggtgagaggtggccttcaatacccagtcaccagggacataacatcct
aaggagccatttcattttactgtcataaatcagcagacatgtagctttgt
aagcactttttctgtatgtgtccccagtggtaactgatggtgttaaaact
gaagtttgc

gaattccagtgagagggtgttggatctctgggaactggagttatggacgt
tgtgagctgacacatggttgttgggaatttggaagagcagcccaggcttt
ttgtttgtttgtttgtttgtgttttcgagacagggtttctctgtgtagcc
ctggctgtcctggaactcactctgtagaccaggctagccttaaactcaga
aatccacctgcctctgcctcccgagtgctgggattaaaggtgtgtgccac
ctcgcctggtgcagcccaggcttttaaccactgagcaatctctccagctt
caaaaccgacttcactattaatctagtcacacattctgctgcaagcctct
ataaaggacacgaaagaaggttggaaggttgctttctttgcttgttcttt
ttttttttttttttgaatgcatttaattttttttattagatattttcttc
atttacatttcaaatgctatcccctttcctagtttcctttctgaaagacc
cctatactctttgcttgttcttactctcacggtaagtccattccttcact
gccttctctttccagattctggcatatactgaaggccagctaagacattc
agccctgtcaactgaacaactactagattattggggcctcctagtatgca
gccaagttggaccatagcctataagctaatacatcctatatcagtctatt
aataaataaataaagatagatagatagatagatagatagatagatagata
gatagatagctggctggctggttgtagtttaggattctctagaggaaccc
taactaatgtacctggggtttgtttgggggttcccaaagagccctctttt
ggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23830745_23831498
seq2: B6Ng01-259F23.b_45_803

seq1  GAATTCCCTGCCTGGAGTTCAGTGGTCACAAGTGTGTGAAAGCCAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCCTGGAGTTCAGTGGTCACAAGTGTGTGAAAGCCAGGAAA  50

seq1  AGGGGGCCTTTGTTTAGGGAGAATAGAGCTGCCTGAGATTGTATCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCCTTTGTTTAGGGAGAATAGAGCTGCCTGAGATTGTATCCAGGG  100

seq1  GACAGTCACCTCACCTGGCCACAGAAGCGGTTGGGGGAGGAGCCAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCACCTCACCTGGCCACAGAAGCGGTTGGGGGAGGAGCCAGGGAA  150

seq1  GATTGAACCAGCAGAGAGGATAGACCAAGGAAGGGAGAGATCACAAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAACCAGCAGAGAGGATAGACCAAGGAAGGGAGAGATCACAAGACC  200

seq1  CAACTCAATTGGTAGCATGCAATAGGAAATGTATTTGGGGCTAAATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAATTGGTAGCATGCAATAGGAAATGTATTTGGGGCTAAATTTTG  250

seq1  TGTACACAGAGCATCTGTTTCATCAGATTCAGGACAGATGTGGTACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAGAGCATCTGTTTCATCAGATTCAGGACAGATGTGGTACAAGA  300

seq1  GGTGGCACTTGAGAGTCACCTTATTCTGCTGGCTCGGAGCAAACAGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACTTGAGAGTCACCTTATTCTGCTGGCTCGGAGCAAACAGGGAT  350

seq1  CAGTCTCAATGGGACGCATCTTGGGAACAACAGATGGGGAAAGGCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAATGGGACGCATCTTGGGAACAACAGATGGGGAAAGGCAACAG  400

seq1  GGGTCAAACCATGAGGACTTAGTGACGATGCAGTACAATGCCCTGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAACCATGAGGACTTAGTGACGATGCAGTACAATGCCCTGTGCTT  450

seq1  AGTGGAGAGTCTGAAATGCTTCAAATAGGCAACTTGTGTTATTAGACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGAGTCTGAAATGCTTCAAATAGGCAACTTGTGTTATTAGACATA  500

seq1  TATTTGCAGCCACATCAGCAGATACAGTGTGAATGATGGCTGTGGCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAGCCACATCAGCAGATACAGTGTGAATGATGGCTGTGGCTGAT  550

seq1  GACTCTGCAGCTCTCTGGGTAGGAGAGAGATGAGGACAGGGTAGGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCAGCTCTCTGGGTAGGAGAGAGATGAGGACAGGGTAGGAGGTA  600

seq1  AGAGGTGAGAGGTGGCCTTCAATACCCAGTCACCAGGGACATAACATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAGGTGGCCTTCAATACCCAGTCACCAGGGACATAACATCCT  650

seq1  AAGGAGCCATTTCATTTTACTGTCATAAATCAGCAGACATGTAGC-TTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGGAGCCATTTCATTTTACTGTCATAAATCAGCAGACATGTAGCTTTGT  700

seq1  -AGCACTTTTTCTGTATGTGT-CCCAGTGGTAACTGAT-GTGTT-AAACT  745
       |||||||||||||||||||| |||||||||||||||| ||||| |||||
seq2  AAGCACTTTTTCTGTATGTGTCCCCAGTGGTAACTGATGGTGTTAAAACT  750

seq1  GAAGTTTGC  754
      |||||||||
seq2  GAAGTTTGC  759


seq1: chr5_90670082_90670351
seq2: B6Ng01-259F23.g_199_538 (reverse)

seq1  GGATAGCATTTGAAATGTAAATGAAGAAAATATCTAAT-AAAAAACTGAA  49
      |||||||||||||||||||||||||||||||||||||| |||||| | ||
seq2  GGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAAATTAA  50

seq1  A------CAACAACAACAACAACAACAAAACCCAAAAAACCCAAAACCCC  93
      |      ||| || || || || || || |  |||| ||  |||    ||
seq2  ATGCATTCAAAAAAAAAAAAAAAAAGAACAAGCAAAGAAAGCAACCTTCC  100

seq1  AAAC-----------------------CAACCAACCAAA-----AACAAA  115
      || |                       |   || |  ||      || | 
seq2  AACCTTCTTTCGTGTCCTTTATAGAGGCTTGCAGCAGAATGTGTGACTAG  150

seq1  AACAAAAACAAA---------AAAG--GGACAG---GATCTCTG------  145
      |  || |   ||          |||  ||| ||   | ||  ||      
seq2  ATTAATAGTGAAGTCGGTTTTGAAGCTGGAGAGATTGCTCAGTGGTTAAA  200

seq1  -------------CCAGGTG-GTTGTATACACACTTTTAATCCCAGCACT  181
                   ||||| | | ||   |||||| |||||||||||||||
seq2  AGCCTGGGCTGCACCAGGCGAGGTG-GCACACACCTTTAATCCCAGCACT  249

seq1  -TGGAGGCAGAGGCAGAAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAC  230
        ||||||||||||||  ||||||||||||| ||||| ||||||||||||
seq2  CGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTAAGGCTAGCCTGGTCTAC  299

seq1  AGAGTGAGTTCCAGGACAGCCA-GGCTACACAAAGAAACCC  270
      |||||||||||||||||||||| ||||||||| ||||||||
seq2  AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  340


| Home | SequenceCutter | Blast | Download |