BAC Information

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BAC

Clone NameB6Ng01-259P03
Chromosome5 (Build37)
Map Location 73,302,629 - 73,303,704
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
Downstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259P03.bB6Ng01-259P03.g
ACCGA064996GA064997
length1,2261,080
definitionB6Ng01-259P03.b B6Ng01-259P03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaaattatatctgtgatcattaatctcttttatagtagaact
gctattaggtccttttctgatagccaaaactgcaatgagaactctgtcag
tctcccaagtgttgccagttaattgctcttcgactctctcctactcagag
cacatttcaagaggttgtaaagccattaaccaaaggtcataaaaagggaa
ctaatgatttattataagtgctaggacagaagataaatattgactgggtt
tatctagacaaaactttactaataacttagttatggttttaaaccttccg
tgaacctgtggagctgagacaggtaatggatgtttagccagataattact
cctaatagatatgcatgtcaacattctctgttgtaaacgtctattttatt
tatgacttgattttctgtgtgaacttttgatgaactttttaacatgtgat
catgtattctgaaagatgtttaagggatgaggacaaagagaagagtcaga
actgagggactgaggcgagagggacagaggtgagaagaactgagaagaac
tgagctgtgaaagggagctgagctgaggagaagtttgtagacagaacact
ttttagacagaactgaactcaagaagaacttagaagttcaggcatagctt
tgggagaaaaggcattgaaagttaagagcattgttgtgacttcagagcag
gaggagagaacaagattagaaggagaatgcaaagtggaataactcagaaa
ctataggtaacataaaaaaaaaaactaagagagcaatatgcagaatgcag
agggaaattagaacaaaggagaatcttcggagaggaaggagcaggcaggc
ttctccttaccatgggacagaacaggtcctttcttaataacaaggcaggc
ttagtcttattaaaaggaacaaagttttttgtttttttgtttttaacaaa
catgggttaattcatttagcattaaaggtagagctttttctttctctatg
caataaagattgagctcatttttcatccagatgagtgagttctttctgca
cggtgcttggtctttgctccacatgcatatgtgagaatggattgtgtgtg
taaatatgtacctgtgagaaatgatgcaatgtgtgtgtgtagcggtaatt
gtgaatgccatgcagcctgtaccactgttgaatggcaagttatttaagtg
gacatgtccatgaaccatctaatata
gaattctttagacatactccttgacaaagtcagttaccattatgaagtta
gcatcagcggtcttgagagagccagaggtcatgcagatcggtgatcagaa
tccgctccgctggcaaggtctcctcttcccatgaacgtggtccttgaact
tttatttctctctctttaatctgggccttgccttttgtccgaatgtgtaa
attaggtgatctctaataacaaatctattaccaagaagtgaaggattctg
gtgagtcatgattataaaatagaagtatgaatatgctcatacagagaaat
ccatagaagacattttttaacccagttgccttactacacattgtttttaa
tttagtaaatattaagtgtgtagtagatggtctgttctgtgtgtgtaata
gatggtctgttctgagcacctgatggtttaatcatttgttagcttgtctt
gtagttccagttagccttgaacttactaggagtctggaatgcccttgaac
tcctgatctttctgactctatctataataaagtttgtatgccaagaactg
aagttggctggttgtgctggtacttgccttaataccagcactcaggaggc
agagccagaggaactctgtgagtttgaggccacccaggtctatatagcaa
gttccaagacagccaagattacatacagagaacctgtctcaaaacaaaac
taaagttataatttatacagacagatatatatatatcacagatacctgag
cacaaagtcaaatctgctctatactacactgtaatagtaaaagctctttt
ttttatgttaaggataaaaactgtgataatccttattgatcttgttcttt
cacccaccaaatccacttcttaagtaggtcatgccgccttgcattcagaa
taggtttaaataccttcccaactgggggacccttaggactctgggttcaa
ttgcccttgttctcccctggtggtttcctccccctctctttaatggacac
atcccctttgctacagatagcctgatgataccacagtagccagaagaatc
cttcctgcaagtcatgttgctattcagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73302629_73303704
seq2: B6Ng01-259P03.g_68_1147 (reverse)

seq1  CTTCTG-ATAGCAACATGACTTGCAGGAAGGA-TCTTCTGGCTACTGT-G  47
      |||||| ||||||||||||||||||||||||| ||||||||||||||| |
seq2  CTTCTGAATAGCAACATGACTTGCAGGAAGGATTCTTCTGGCTACTGTGG  50

seq1  TATCCATCAGGCTATCTGTAGCAAAGGGGATGTGTCCATTAAAAGAGA-G  96
      ||| |||||||||||||||||||||||||||||||||||| ||||||| |
seq2  TAT-CATCAGGCTATCTGTAGCAAAGGGGATGTGTCCATT-AAAGAGAGG  98

seq1  GGGAGGAAACCA-CAGGGGAGAACAAGGGCAATTTGAACCAGAGTCCTAA  145
      |||||||||||| |||||||||||||||||||||  | ||||||||||||
seq2  GGGAGGAAACCACCAGGGGAGAACAAGGGCAATTGAACCCAGAGTCCTAA  148

seq1  GGGTCCCCCAGTTGGG-AGGTATTTAAACCTATTCTGAATGCAAGGCGGC  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGTCCCCCAGTTGGGAAGGTATTTAAACCTATTCTGAATGCAAGGCGGC  198

seq1  ATGACCTACTTAAGAAGTGGATTTGGTGGGTGAAAGAACAAGATCAATAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTACTTAAGAAGTGGATTTGGTGGGTGAAAGAACAAGATCAATAA  248

seq1  GGATTATCACAGTTTTTATCCTTAACATAAAAAAAAGAGCTTTTACTATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATCACAGTTTTTATCCTTAACATAAAAAAAAGAGCTTTTACTATT  298

seq1  ACAGTGTAGTATAGAGCAGATTTGACTTTGTGCTCAGGTATCTGTGATAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAGTATAGAGCAGATTTGACTTTGTGCTCAGGTATCTGTGATAT  348

seq1  ATATATATCTGTCTGTATAAATTATAACTTTAGTTTTGTTTTGAGACAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCTGTCTGTATAAATTATAACTTTAGTTTTGTTTTGAGACAGG  398

seq1  TTCTCTGTATGTAATCTTGGCTGTCTTGGAACTTGCTATATAGACCTGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATGTAATCTTGGCTGTCTTGGAACTTGCTATATAGACCTGGG  448

seq1  TGGCCTCAAACTCACAGAGTTCCTCTGGCTCTGCCTCCTGAGTGCTGGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAACTCACAGAGTTCCTCTGGCTCTGCCTCCTGAGTGCTGGTA  498

seq1  TTAAGGCAAGTACCAGCACAACCAGCCAACTTCAGTTCTTGGCATACAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAAGTACCAGCACAACCAGCCAACTTCAGTTCTTGGCATACAAA  548

seq1  CTTTATTATAGATAGAGTCAGAAAGATCAGGAGTTCAAGGGCATTCCAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATAGATAGAGTCAGAAAGATCAGGAGTTCAAGGGCATTCCAGA  598

seq1  CTCCTAGTAAGTTCAAGGCTAACTGGAACTACAAGACAAGCTAACAAATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTAAGTTCAAGGCTAACTGGAACTACAAGACAAGCTAACAAATG  648

seq1  ATTAAACCATCAGGTGCTCAGAACAGACCATCTATTACACACACAGAACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCATCAGGTGCTCAGAACAGACCATCTATTACACACACAGAACA  698

seq1  GACCATCTACTACACACTTAATATTTACTAAATTAAAAACAATGTGTAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTACTACACACTTAATATTTACTAAATTAAAAACAATGTGTAGT  748

seq1  AAGGCAACTGGGTTAAAAAATGTCTTCTATGGATTTCTCTGTATGAGCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACTGGGTTAAAAAATGTCTTCTATGGATTTCTCTGTATGAGCAT  798

seq1  ATTCATACTTCTATTTTATAATCATGACTCACCAGAATCCTTCACTTCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACTTCTATTTTATAATCATGACTCACCAGAATCCTTCACTTCTT  848

seq1  GGTAATAGATTTGTTATTAGAGATCACCTAATTTACACATTCGGACAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAGATTTGTTATTAGAGATCACCTAATTTACACATTCGGACAAAA  898

seq1  GGCAAGGCCCAGATTAAAGAGAGAGAAATAAAAGTTCAAGGACCACGTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGCCCAGATTAAAGAGAGAGAAATAAAAGTTCAAGGACCACGTTC  948

seq1  ATGGGAAGAGGAGACCTTGCCAGCGGAGCGGATTCTGATCACCGATCTGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGAGGAGACCTTGCCAGCGGAGCGGATTCTGATCACCGATCTGC  998

seq1  ATGACCTCTGGCTCTCTCAAGACCGCTGATGCTAACTTCATAATGGTAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTCTGGCTCTCTCAAGACCGCTGATGCTAACTTCATAATGGTAAC  1048

seq1  TGACTTTGTCAAGGAGTATGTCTAAAGAATTC  1076
      ||||||||||||||||||||||||||||||||
seq2  TGACTTTGTCAAGGAGTATGTCTAAAGAATTC  1080