BAC Information

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BAC

Clone NameB6Ng01-260E21
Chromosome5 (Build37)
Map Location 19,770,452 - 19,964,412
singlet/doubletdoublet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260E21.bB6Ng01-260E21.g
ACCGA065260GA065261
length1,144494
definitionB6Ng01-260E21.b B6Ng01-260E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,963,263 - 19,964,412)(19,770,452 - 19,770,951)
sequence
gaattcacagtgataattaggtcagaatcagataccagaaccaggccctt
aatacaagtgttaagaattaatttcaagcagtccaggctatattttgact
taaggatatttttcaaattactatctgccaggctgctgggtaaaatatct
tcagttcatgagtgtgaaaattgagagatgaactgcagtgttcttttgat
tggctaagttaatggagggaggcactgaagcaggtaattatggacaggga
agtccatggcaatagctcatctgtttcctgcagtcatctatataatacat
tgtttggaagagggcttaggggacgctgagctggaggaatgtcagaggat
cacagcctacgacactcagaaaccatcgtgatatatcacacacgcacata
tgtgttaacattagaaatggtaatttctaagatgtagcttcaaaggtcct
gcatcagataactttgcatagcactgggcagtttcaatggcaccattgag
ccactaaatagacagatctctggaggcttcctcggactttctacaaaagc
atccagtgactgcagtgagctatctgtaggcaaagaacattgtctatgag
ctcatccataagatgatacagtagccacttctcgaaagagggaaggattt
cttaatcacatcttaccacttctgctctatgacctggtgcagatgtctga
ttaagagcttgccttacgaagctttatgtttgatcagcacacatgcaaca
attattctctgacagctgtgtccagtgatctatttacattcactcagtgt
ttggcattgagtggtgtgatgtatttaaatcctggcattttattttcttg
aagggaacataagaaacacattgtaagggaatctaagcactgattatctg
ctgatctggcaaagatgaaacaatatttcagataaaagtataggcaaagc
aacaaaagcagcacagagtgttttttgttttaaaattattatttcaaagt
tcccaaagtataggctttctagaataacctgttccacttctgggaatttg
gtagcataatggtgaggtgaatttgtttatttcttaaaagaattatattg
catttgaacaccagtgacaatatgttattggaggaccacataaa

caacaaaaacataatgtgtgtacttgatttctttttaaaaaaaaaactat
aaggagactagaaattgaacacagactaatattccaacacctaaattaca
tttggacatactattcaaacaaggtttcctggattaatggatgtgtgtga
aagagaatatttagtttgaaaactggtacaccctggtatatgtacgcttc
agaaatagaagtggatttgaatcctcacttaaaatgattatgacctgagc
aattttacatcaaattcacctttcacccgtggaagttactgttcttacct
cagacagttgtctgaggattaagtgaggtcagaatcacttcccttactgc
ctgctgaattgctgtagggtttgtacagtatttgttttcttctttctcct
gttattgttatagttcttgtgaagagagcaggagaaaaagcaacagggag
aattggaggggaaggaggaagagagaggagaaagaaggagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19963263_19964412
seq2: B6Ng01-260E21.b_38_1181 (reverse)

seq1  TTTATGTGGTTCCTCCAATAACATATTTGTCACTTGGTTGTTTAAAATGC  50
      ||||||||| ||||||||||||||| ||||||| ||||   || ||||||
seq2  TTTATGTGG-TCCTCCAATAACATA-TTGTCAC-TGGT--GTTCAAATGC  45

seq1  ATTATATTCTTTTTAAGAAAT-AACAAATTCA-CTCACCATTTATGCTAC  98
      | |||| |  ||||||||||| |||||||||| ||||||| |||||||||
seq2  AATATAATTCTTTTAAGAAATAAACAAATTCACCTCACCA-TTATGCTAC  94

seq1  CAAATT-CCAGAAGT-GAACAGGTTA-TCTAGAAAGCCTATACTTTGGGA  145
      |||||| |||||||| |||||||||| |||||||||||||||||||||| 
seq2  CAAATTCCCAGAAGTGGAACAGGTTATTCTAGAAAGCCTATACTTTGGG-  143

seq1  AACTTTGAAATAATAATTTTAAAAACAAAAAACACTCTGTGCTGCTTTTT  195
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  AACTTTGAAATAATAATTTT-AAAACAAAAAACACTCTGTGCTGC-TTTT  191

seq1  GTTGCTTTGCCTATACTTTTTATCTGAAATATTGTTTCATCTTTGCCAGA  245
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGCTTTGCCTATAC-TTTTATCTGAAATATTGTTTCATCTTTGCCAGA  240

seq1  TCAGCAGATAATCAGTGCTTTAGATTCCCTTACAATGTGTTTCTTATGTT  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGCAGATAATCAGTGC-TTAGATTCCCTTACAATGTGTTTCTTATGTT  289

seq1  CCCTTCAAGAAAATAAAATGCCAGGATTTAAATACATCACACCACTCAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAGAAAATAAAATGCCAGGATTTAAATACATCACACCACTCAAT  339

seq1  GCCAAACACTGAGTGAATGTAAATAGATCACTGGACACAGCTGTCAGAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACACTGAGTGAATGTAAATAGATCACTGGACACAGCTGTCAGAGA  389

seq1  ATAATTGTTGCATGTGTGCTGATCAAACATAAAGCTTCGTAAGGCAAGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTTGCATGTGTGCTGATCAAACATAAAGCTTCGTAAGGCAAGCT  439

seq1  CTTAATCAGACATCTGCACCAGGTCATAGAGCAGAAGTGGTAAGATGTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAGACATCTGCACCAGGTCATAGAGCAGAAGTGGTAAGATGTGA  489

seq1  TTAAGAAATCCTTCCCTCTTTCGAGAAGTGGCTACTGTATCATCTTATGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATCCTTCCCTCTTTCGAGAAGTGGCTACTGTATCATCTTATGG  539

seq1  ATGAGCTCATAGACAATGTTCTTTGCCTACAGATAGCTCACTGCAGTCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCATAGACAATGTTCTTTGCCTACAGATAGCTCACTGCAGTCAC  589

seq1  TGGATGCTTTTGTAGAAAGTCCGAGGAAGCCTCCAGAGATCTGTCTATTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTTTTGTAGAAAGTCCGAGGAAGCCTCCAGAGATCTGTCTATTT  639

seq1  AGTGGCTCAATGGTGCCATTGAAACTGCCCAGTGCTATGCAAAGTTATCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCAATGGTGCCATTGAAACTGCCCAGTGCTATGCAAAGTTATCT  689

seq1  GATGCAGGACCTTTGAAGCTACATCTTAGAAATTACCATTTCTAATGTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGACCTTTGAAGCTACATCTTAGAAATTACCATTTCTAATGTTA  739

seq1  ACACATATGTGCGTGTGTGATATATCACGATGGTTTCTGAGTGTCGTAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGTGCGTGTGTGATATATCACGATGGTTTCTGAGTGTCGTAGG  789

seq1  CTGTGATCCTCTGACATTCCTCCAGCTCAGCGTCCCCTAAGCCCTCTTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCCTCTGACATTCCTCCAGCTCAGCGTCCCCTAAGCCCTCTTCC  839

seq1  AAACAATGTATTATATAGATGACTGCAGGAAACAGATGAGCTATTGCCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTATTATATAGATGACTGCAGGAAACAGATGAGCTATTGCCAT  889

seq1  GGACTTCCCTGTCCATAATTACCTGCTTCAGTGCCTCCCTCCATTAACTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCCTGTCCATAATTACCTGCTTCAGTGCCTCCCTCCATTAACTT  939

seq1  AGCCAATCAAAAGAACACTGCAGTTCATCTCTCAATTTTCACACTCATGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCAAAAGAACACTGCAGTTCATCTCTCAATTTTCACACTCATGA  989

seq1  ACTGAAGATATTTTACCCAGCAGCCTGGCAGATAGTAATTTGAAAAATAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGATATTTTACCCAGCAGCCTGGCAGATAGTAATTTGAAAAATAT  1039

seq1  CCTTAAGTCAAAATATAGCCTGGACTGCTTGAAATTAATTCTTAACACTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTCAAAATATAGCCTGGACTGCTTGAAATTAATTCTTAACACTT  1089

seq1  GTATTAAGGGCCTGGTTCTGGTATCTGATTCTGACCTAATTATCACTGTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAGGGCCTGGTTCTGGTATCTGATTCTGACCTAATTATCACTGTG  1139

seq1  AATTC  1150
      |||||
seq2  AATTC  1144


seq1: chr5_19770452_19770951
seq2: B6Ng01-260E21.g_64_563

seq1  GAATTCCAACAAAAACATAATGTGTGTACTTGATTTCTTTTTAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAAAAACATAATGTGTGTACTTGATTTCTTTTTAAAAAAAA  50

seq1  AACTATAAGGAGACTAGAAATTGAACACAGACTAATATTCCAACACCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAGGAGACTAGAAATTGAACACAGACTAATATTCCAACACCTAA  100

seq1  ATTACATTTGGACATACTATTCAAACAAGGTTTCCTGGATTAATGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTGGACATACTATTCAAACAAGGTTTCCTGGATTAATGGATGT  150

seq1  GTGTGAAAGAGAATATTTAGTTTGAAAACTGGTACACCCTGGTATATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAGAGAATATTTAGTTTGAAAACTGGTACACCCTGGTATATGTA  200

seq1  CGCTTCAGAAATAGAAGTGGATTTGAATCCTCACTTAAAATGATTATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCAGAAATAGAAGTGGATTTGAATCCTCACTTAAAATGATTATGAC  250

seq1  CTGAGCAATTTTACATCAAATTCACCTTTCACCCGTGGAAGTTACTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAATTTTACATCAAATTCACCTTTCACCCGTGGAAGTTACTGTTC  300

seq1  TTACCTCAGACAGTTGTCTGAGGATTAAGTGAGGTCAGAATCACTTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCAGACAGTTGTCTGAGGATTAAGTGAGGTCAGAATCACTTCCCT  350

seq1  TACTGCCTGCTGAATTGCTGTAGGGTTTGTACAGTATTTGTTTTCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTGCTGAATTGCTGTAGGGTTTGTACAGTATTTGTTTTCTTCTT  400

seq1  TCTCCTGTTATTGTTATAGTTCTTGTGAAGAGAGCAGGAGAAAAAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTATTGTTATAGTTCTTGTGAAGAGAGCAGGAGAAAAAGCAAC  450

seq1  AGGGAGAATTGGAGGGGAAGGAGGAAGAGAGAGGAGAAAGAAGGAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAATTGGAGGGGAAGGAGGAAGAGAGAGGAGAAAGAAGGAGAAGA  500


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