BAC Information

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BAC

Clone NameB6Ng01-260O18
Chromosome5 (Build37)
Map Location 79,964,451 - 80,139,222
singlet/doubletdoublet
Overlap genenone
Upstream geneEG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260O18.bB6Ng01-260O18.g
ACCGA065722GA065723
length1,1071,079
definitionB6Ng01-260O18.b B6Ng01-260O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,964,451 - 79,965,529)(80,138,158 - 80,139,222)
sequence
gaattctttgtttagctctgtacaccattttttaatagggttattttttt
ccctttgtctaacttctattttgatggattcttcggcctgaatgtgttcc
tgcttatttatttttcaaaatgaaactccgtaggtagcaggcttagaaag
atgattgaacatgagataatgaaaagtgttcgccctttaaaagaagcctc
aggaaacctcctcaccctgtgtaccatgttcctttgtccagagaagataa
tcctgaggacaacaaatggactttgagttttcagtctattgaactatgtg
aaaaacatttctttcttataaaaaacccacagtatttgataatttatttt
aagcgaatagatgcaattatattttagtcattatattcacatgtacttgt
atgtgaggttcatgtggatacacaaaggggcttggaggagacaatcaggc
tagtaaacttgaatgattaagattaaacaaagtgaatcttgccttctttg
tttaataatgacaaaactcactggtgctgatcattcaatgtcagattacc
tcttgctcttaaaacttttaaagtaaggtaaatgtatacattgacctcat
tcatgattgaagtgggaatttctggtttcactggagggctagttgtgtca
cgcgatgtttctctggaaacaatcttatgagaggatgcttggctgaagca
gacatgtgagtggagtttgggctgaagcacgaacctgggaagatgattgg
ctgagaacagacatgtggtatttttctggaagcttcctggtgaaaggggc
atgcaattattttttcctggagcagatatttctggaggacatgtatagtt
ttggacagagtataaagtaacaactcaccagacagctgtatgacacctct
taacactgggtccaccttgctttcttttgctggaacttcatttggtgggg
accttcatagagaggaaatgccaccaaagaatcttcttggtggtatttct
ggctgcttcttgatacttccatggaccttttgccaacttggtgtagcctc
aggaactctttctggtcaagcctccctcttactgatccatagttggtatt
gcgccag
gaattcaataattttggtttcaaaggctaatgcggtcatgaaaattcagt
gtttgtagccactcaaactaattgttccattgaaaatataatgaagaagt
cataaaggaatttcatagatttttcaatgtactggagcaataaatgatcc
cttgtggttcctttttgaaatgctattttctgtgcttcacagatcttacc
aactgaatgtgaaaaatcctggatatatttatatattaaagggatatgga
cattcctggccaacacacagatggtgagaatttaagttcatttccaggga
cacatttcaatatatgaatatagagaagctgataagtgattttaaaggaa
gcttgttttagagtgtgaaatccttctaccaacacccccccgaaaaaaaa
acaaactatgatgctcttgcaatattaacagatgactcctgaaatatggc
ttcaaatacattttaaagaagggagaagggagtacttatctttttatggt
ataatatttaaaatatggtgcttatgcagtagcacacatggggatataaa
tcaagggctaaaaccttaaccatgttgagagacggggttataatacattt
cacgctttagcgaagcagttgctgaaaccaaattttagcactctgcattg
agtgagtctgctcagttggtagcatcttatttgtgaacaaaagcatcctc
attatgatggcaataactaaggtgaggcataatagcttgatttatatttt
tcattgttactgattagtaatgaaattgatttactaggaggtttttgtgt
gaaaaaatataaaaagttatgggtcatttaatttttaatttataatagat
aaattatgcatggggccaacatattagcaaaacagttttttttttttata
aagggaagactacccttatgatagctggaatagtaagatatcccctaatg
aaaaacgtgccttaaataaacgctcagattggaatatactggggaatggt
taaataggaattggaatgtctttcttaaattaaggtaatgtggctatagg
actctttaaaaaaagggatatggctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79964451_79965529
seq2: B6Ng01-260O18.b_41_1147

seq1  GAATTCTTTGTTTAGCTCTGTACACCATTTTTTAATAGGGTTATTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACACCATTTTTTAATAGGGTTATTTTTTT  50

seq1  CCCTTTGTCTAACTTCTATTTTGATGGATTCTTCGGCCTGAATGTGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTCTAACTTCTATTTTGATGGATTCTTCGGCCTGAATGTGTTCC  100

seq1  TGCTTATTTATTTTTCAAAATGAAACTCCGTAGGTAGCAGGCTTAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTATTTTTCAAAATGAAACTCCGTAGGTAGCAGGCTTAGAAAG  150

seq1  ATGATTGAACATGAGATAATGAAAAGTGTTCGCCCTTTAAAAGAAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGAACATGAGATAATGAAAAGTGTTCGCCCTTTAAAAGAAGCCTC  200

seq1  AGGAAACCTCCTCACCCTGTGTACCATGTTCCTTTGTCCAGAGAAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTCCTCACCCTGTGTACCATGTTCCTTTGTCCAGAGAAGATAA  250

seq1  TCCTGAGGACAACAAATGGACTTTGAGTTTTCAGTCTATTGAACTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGACAACAAATGGACTTTGAGTTTTCAGTCTATTGAACTATGTG  300

seq1  AAAAACATTTCTTTCTTATAAAAAACCCACAGTATTTGATAATTTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTTCTTTCTTATAAAAAACCCACAGTATTTGATAATTTATTTT  350

seq1  AAGCGAATAGATGCAATTATATTTTAGTCATTATATTCACATGTACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAATAGATGCAATTATATTTTAGTCATTATATTCACATGTACTTGT  400

seq1  ATGTGAGGTTCATGTGGATACACAAAGGGGCTTGGAGGAGACAATCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGTTCATGTGGATACACAAAGGGGCTTGGAGGAGACAATCAGGC  450

seq1  TAGTAAACTTGAATGATTAAGATTAAACAAAGTGAATCTTGCCTTCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACTTGAATGATTAAGATTAAACAAAGTGAATCTTGCCTTCTTTG  500

seq1  TTTAATAATGACAAAACTCACTGGTGCTGATCATTCAATGTCAGATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATGACAAAACTCACTGGTGCTGATCATTCAATGTCAGATTACC  550

seq1  TCTTGCTCTTAAAAC-TTTAAAGTAAGGTAAATGTATACATTGACCTCAT  599
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCTTAAAACTTTTAAAGTAAGGTAAATGTATACATTGACCTCAT  600

seq1  TCATGATTGAAGTGGGAATTTCTGGTTTCACTGGAGGGCTAGTTGTGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTGAAGTGGGAATTTCTGGTTTCACTGGAGGGCTAGTTGTGTCA  650

seq1  CGCGATGTTTCTCTGGAAACAATCTTATGAGAGGATGCTTGGCTGAAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGATGTTTCTCTGGAAACAATCTTATGAGAGGATGCTTGGCTGAAGCA  700

seq1  GACATGTGAGTGGAGTTTGGGCTGAAGCACGAACCTGGGAAGATGATTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGAGTGGAGTTTGGGCTGAAGCACGAACCTGGGAAGATGATTGG  750

seq1  CTGAGAACAGACATGTGGTATTTTTCTGGAAGCTTCCTGGTGAAA-GGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGAGAACAGACATGTGGTATTTTTCTGGAAGCTTCCTGGTGAAAGGGGC  800

seq1  ATGCA---ATATTTTCCTGGAGCAGATATTTCT-GAGGACATGTATAG-T  843
      |||||   || |||||||||||||||||||||| |||||||||||||| |
seq2  ATGCAATTATTTTTTCCTGGAGCAGATATTTCTGGAGGACATGTATAGTT  850

seq1  TTGGACAGAGTAT-AAGT-ACAACTCAACAGACAGCTG-ATGACA-CTCT  889
      ||||||||||||| |||| |||||||| |||||||||| |||||| ||||
seq2  TTGGACAGAGTATAAAGTAACAACTCACCAGACAGCTGTATGACACCTCT  900

seq1  T-ACACT-GGTTCACCTTGCTTTC-TTTGCT-GAACTTCATTT-GTGGTG  934
      | ||||| ||| |||||||||||| |||||| ||||||||||| |||| |
seq2  TAACACTGGGTCCACCTTGCTTTCTTTTGCTGGAACTTCATTTGGTGGGG  950

seq1  A-CTTCATAGAGA-GAAATG-CACCAAAG-ATCTTC-TGGTGGTA-TTCT  978
      | ||||||||||| |||||| |||||||| |||||| |||||||| ||||
seq2  ACCTTCATAGAGAGGAAATGCCACCAAAGAATCTTCTTGGTGGTATTTCT  1000

seq1  GGCTGCTTCTTGATACTTCCATGTA-CTTTTGTCAACTT-GTGTAGCCTC  1026
      ||||||||||||||||||||||| | |||||| |||||| ||||||||||
seq2  GGCTGCTTCTTGATACTTCCATGGACCTTTTGCCAACTTGGTGTAGCCTC  1050

seq1  AGG-ACTCTTCTGGGTCAAGCCT--CTCCTACTGATTCATAAGTGGTATT  1073
      ||| ||||||   ||||||||||  ||| ||||||| ||||  |||||||
seq2  AGGAACTCTTTCTGGTCAAGCCTCCCTCTTACTGATCCATAGTTGGTATT  1100

seq1  -TGCCAG  1079
        |||||
seq2  GCGCCAG  1107

seq1: chr5_80138158_80139222
seq2: B6Ng01-260O18.g_66_1144 (reverse)

seq1  AGAAAACCATATCC--TTTCTTAAAGAGTCCTATA-CCACATAACCTTAC  47
      ||||| ||||||||  ||| ||||||||||||||| |||||| |||||| 
seq2  AGAAAGCCATATCCCTTTTTTTAAAGAGTCCTATAGCCACATTACCTTAA  50

seq1  TTT-AGAATGACA-TCCAATTCCTATTTAA-CATTTCCCAGTATA-TCAA  93
      ||| |||| |||| |||||||||||||||| |||| ||||||||| || |
seq2  TTTAAGAAAGACATTCCAATTCCTATTTAACCATTCCCCAGTATATTCCA  100

seq1  ATCTGAGCGTTTATTTAA-GCACGTTTTTCATTA-GGGATATCCTACTAT  141
      |||||||||||||||||| ||||||||||||||| |||||||| ||||||
seq2  ATCTGAGCGTTTATTTAAGGCACGTTTTTCATTAGGGGATATCTTACTAT  150

seq1  TCCAGCTATCATAAGTGTTAGTCTT-CCTTTATAAAAAAAAAAAACTGTT  190
      ||||||||||||||| | ||||||| ||||||||||||||||||||||||
seq2  TCCAGCTATCATAAG-GGTAGTCTTCCCTTTATAAAAAAAAAAAACTGTT  199

seq1  TTGCTAAATATGT--GGCCCATGCATAATTTATCTA-TATAAATAAAAAA  237
      ||||| |||||||  | ||||||||||||||||||| ||||||| |||||
seq2  TTGCT-AATATGTTGGCCCCATGCATAATTTATCTATTATAAATTAAAAA  248

seq1  TTAAATGACCCATAAC-TTTTATA-TTTTTCACACAAAAACCTCCTAGTA  285
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TTAAATGACCCATAACTTTTTATATTTTTTCACACAAAAACCTCCTAGTA  298

seq1  AATCAATTTCATTACTAATCAGTAAACAATGAAAAATAT-AATCAAGCTA  334
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  AATCAATTTCATTACTAATCAGT-AACAATGAAAAATATAAATCAAGCTA  347

seq1  TTATGCCTCACCTTAGTTATTGCCATCATAATGAGGATGC-TTTGTTCAC  383
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTATGCCTCACCTTAGTTATTGCCATCATAATGAGGATGCTTTTGTTCAC  397

seq1  AAATAAGATGCTACCAACTGAGCAGACTCACTCAATGCAGAGTGCTAAAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATGCTACCAACTGAGCAGACTCACTCAATGCAGAGTGCTAAAA  447

seq1  TTTGGTTTCAGCAACTGCTTCGCTAAAGCGTGAAATGTATTATAACCCCG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCAGCAACTGCTTCGCTAAAGCGTGAAATGTATTATAACCCCG  497

seq1  TCTCTCAACATGGTTAAGGTTTTAGCCCTTGATTTATATCCCCATGTGTG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAACATGGTTAAGGTTTTAGCCCTTGATTTATATCCCCATGTGTG  547

seq1  CTACTGCATAAGCACCATATTTTAAATATTATACCATAAAAAGATAAGTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCATAAGCACCATATTTTAAATATTATACCATAAAAAGATAAGTA  597

seq1  CTCCCTTCTCCCTTCTTTAAAATGTATTTGAAGCCATATTTCAGGAGTCA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTCCCTTCTTTAAAATGTATTTGAAGCCATATTTCAGGAGTCA  647

seq1  TCTGTTAATATTGCAAGAGCATCATAGTTTGTTTTTTTTTCGGGGGGGTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAATATTGCAAGAGCATCATAGTTTGTTTTTTTTTCGGGGGGGTG  697

seq1  TTGGTAGAAGGATTTCACACTCTAAAACAAGCTTCCTTTAAAATCACTTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGAAGGATTTCACACTCTAAAACAAGCTTCCTTTAAAATCACTTA  747

seq1  TCAGCTTCTCTATATTCATATATTGAAATGTGTCCCTGGAAATGAACTTA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCTCTATATTCATATATTGAAATGTGTCCCTGGAAATGAACTTA  797

seq1  AATTCTCACCATCTGTGTGTTGGCCAGGAATGTCCATATCCCTTTAATAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCACCATCTGTGTGTTGGCCAGGAATGTCCATATCCCTTTAATAT  847

seq1  ATAAATATATCCAGGATTTTTCACATTCAGTTGGTAAGATCTGTGAAGCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATCCAGGATTTTTCACATTCAGTTGGTAAGATCTGTGAAGCA  897

seq1  CAGAAAATAGCATTTCAAAAAGGAACCACAAGGGATCATTTATTGCTCCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATAGCATTTCAAAAAGGAACCACAAGGGATCATTTATTGCTCCA  947

seq1  GTACATTGAAAAATCTATGAAATTCCTTTATGACTTCTTCATTATATTTT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGAAAAATCTATGAAATTCCTTTATGACTTCTTCATTATATTTT  997

seq1  CAATGGAACAATTAGTTTGAGTGGCTACAAACACTGAATTTTCATGACCG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAACAATTAGTTTGAGTGGCTACAAACACTGAATTTTCATGACCG  1047

seq1  CATTAGCCTTTGAAACCAAAATTATTGAATTC  1065
      ||||||||||||||||||||||||||||||||
seq2  CATTAGCCTTTGAAACCAAAATTATTGAATTC  1079