BAC Information

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BAC

Clone NameB6Ng01-260P18
Chromosome5 (Build37)
Map Location 50,848,746 - 50,849,854
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P18.bB6Ng01-260P18.g
ACCGA065766GA065767
length1,1691,106
definitionB6Ng01-260P18.b B6Ng01-260P18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtatccattttctaaatgggttatttgggtt
gttggagttcaacttcttgagttctttataaattttagatattagcctct
gacagatatagggttagtgaagatgttctattgagtgtgttctttgcctt
aaagaatcatgtcagtttcttgaggtcccatttataaaagtggagatatg
gaacctgaagaggcaaccttcctgtagccaggcaggaacctcattagaac
tattgggacactaaatacccacaaagctttcaacccccaatttatcctgt
ctacaagaaatgcagtgatggggcatggagcagagactaaggaatgacca
agccataaccagccctacttgagatgcatcacatgggcaagcaacaaccc
ctgacactgttaatgatattctggtatgctttcagacaggagcctagcat
acctgtcttctgagaggatccacccagcagctgtctcagacagatgcagg
caaccacagacaaacactggatggaggtttgggactcatagggaagagtt
ggagaaagatgggaaccccaaaggagatatgtactccactggagaacaaa
agagtcaactaacttgcagccttaggggattcaagagactgggccaccaa
ccaaagaacatacacatgctggccctaggcccctacacatacatatatag
cagatgtacagcgtagtcttcaggtaggtcctgaacaaccaaacttgagc
tatccctagagatgtttcctgtctctagaatatgttcccctagctagact
gccttgtctggcctcagtgagagtcaatgtgcatatccctgaagagactt
aacattccatggtttgagggacgcccagggggatcctttaccttcttaga
gaagaagaggagggagcatgggtgaagaaatgtgggatgaggaaactgga
ggagggcagccctttgggatgtaaagtgtataaatttaaaaagaaaaaac
tatagcatttaatttcccaaagtaccccaacatctcaggcacttactgta
tctactttattgcatagtcaagttatatacataagatcagaattcacaac
catgtaacctgggttagaatcatggcacattcgttctttgaattatatgg
tatctgttcttaacaaatc

gaattcttagaaacaaaggggtcatgacagcattgttgaacacttctcct
cctcctcgtatgcctccagttaatttctactcctgtattagcaaagctgg
ctgggacacaggccccatttagcaaaacgatgaaacacaaacgtttattg
aaactgtgtttcgaatcaacagggttttcctcagattgagttgccgccaa
ttatcctccatgcaattatggtgatcccagaagcgagcagatggggaaga
gttttgttttcaaatggaggagaaaccaatatgtaggaagaaaaggcagc
ttgttcatttgaacagactccaggtggctggttgccaacaggcagagaag
agagctggggaggcagggctggccctggatcagtctgactgcccacagac
cagagcggccactgagacaaggctaggctctgcccatctcctctgccctc
agccagagtgtctgtgggagtggaggcagagtgagtaacagccccagggg
cccttgtaggtcagggttctgatctagatgccactgtagctagaacattt
cgttattgtttaaaagcaacatattggtatgttttataagagaagaaaac
tcaagaagacataaagtcctaaaccatatggccaacctccttgtatggcc
ttgaccattttgtaatttttcaaaacctaaaagatattttagtttcttaa
taattatattgtatcaagcttctttttagactctacttttgactcttcac
aaggaaacagagaacagtgttgtggttggcataattattctaccttgggc
ttttagtcataattaaattttgtacctagggttcaattaaacatattaaa
tagataccacgtatggtagcaaacacttctgatcttaccatttagaaagg
cagaaataagatcatgaattcaagtccagcatgtgcttgtctaatggttg
gggaaattattacattgatgagtgctcgcctagcttatacagatccttta
ccctgcattctaggatattcagtctttagaagggactctttgcacatatt
ggactcaaaaaaatccaaagcacagaagagtggaagatactttactttac
ttagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50848746_50849854
seq2: B6Ng01-260P18.g_66_1171

seq1  GAATTCTTAGAAACAAAGGGGTCATGACAGCATTGTTGAACACTTCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAACAAAGGGGTCATGACAGCATTGTTGAACACTTCTCCT  50

seq1  CCTCCTCGTATGCCTCCAGTTAATTTCTACTCCTGTATTAGCAAAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCGTATGCCTCCAGTTAATTTCTACTCCTGTATTAGCAAAGCTGG  100

seq1  CTGGGACACAGGCCCCATTTAGCAAAACGATGAAACACAAACGTTTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACACAGGCCCCATTTAGCAAAACGATGAAACACAAACGTTTATTG  150

seq1  AAACTGTGTTTCGAATCAACAGGGTTTTCCTCAGATTGAGTTGCCGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTTTCGAATCAACAGGGTTTTCCTCAGATTGAGTTGCCGCCAA  200

seq1  TTATCCTCCATGCAATTATGGTGATCCCAGAAGCGAGCAGATGGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCCATGCAATTATGGTGATCCCAGAAGCGAGCAGATGGGGAAGA  250

seq1  GTTTTGTTTTCAAATGGAGGAGAAACCAATATGTAGGAAGAAAAGGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTCAAATGGAGGAGAAACCAATATGTAGGAAGAAAAGGCAGC  300

seq1  TTGTTCATTTGAACAGACTCCAGGTGGCTGGTTGCCAACAGGCAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTTGAACAGACTCCAGGTGGCTGGTTGCCAACAGGCAGAGAAG  350

seq1  AGAGCTGGGGAGGCAGGGCTGGCCCTGGATCAGTCTGACTGCCCACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGGAGGCAGGGCTGGCCCTGGATCAGTCTGACTGCCCACAGAC  400

seq1  CAGAGCGGCCACTGAGACAAGGCTAGGCTCTGCCCATCTCCTCTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGGCCACTGAGACAAGGCTAGGCTCTGCCCATCTCCTCTGCCCTC  450

seq1  AGCCAGAGTGTCTGTGGGAGTGGAGGCAGAGTGAGTAACAGCCCCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGTGTCTGTGGGAGTGGAGGCAGAGTGAGTAACAGCCCCAGGGG  500

seq1  CCCTTGTAGGTCAGGGTTCTGATCTAGATGCCACTGTAGCTAGAACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTAGGTCAGGGTTCTGATCTAGATGCCACTGTAGCTAGAACATTT  550

seq1  CGTTATTGTTTAAAAGCAACATATTGGTATGTTTTATAAGAGAAGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTGTTTAAAAGCAACATATTGGTATGTTTTATAAGAGAAGAAAAC  600

seq1  TCAAGAAGACATAAAGTCCTAAACCATATGGCCAACCTCCTTGTATGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGACATAAAGTCCTAAACCATATGGCCAACCTCCTTGTATGGCC  650

seq1  TTGACCATTTTGTAATTTTTCAAAACCTAAAAGATATTTTAGTTTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCATTTTGTAATTTTTCAAAACCTAAAAGATATTTTAGTTTCTTAA  700

seq1  TAATTATATTGTATCAAGCTTCTTTTTAGACTCTACTTTTGACTCTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATATTGTATCAAGCTTCTTTTTAGACTCTACTTTTGACTCTTCAC  750

seq1  AAGGAAACAGAGAACAGTGTTGTGGTTGGCATAATTATTCTACCTTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAGAGAACAGTGTTGTGGTTGGCATAATTATTCTACCTTGGGC  800

seq1  TTTTAGTCATAATTAAATTTTGTACCTAGGGTTCAATTAAACATATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCATAATTAAATTTTGTACCTAGGGTTCAATTAAACATATTAAA  850

seq1  TAGATACCACGTATGGTAGCAAACACTTCTGATCTTACCATTTAG-AAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGATACCACGTATGGTAGCAAACACTTCTGATCTTACCATTTAGAAAGG  900

seq1  CAGAAATAAGATCATGAATTCAAGTCCAGCATGTGCTTGTCTAATGGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAGATCATGAATTCAAGTCCAGCATGTGCTTGTCTAATGGTTG  950

seq1  GGGATA-TATTACATTGATGAAGTGCTCGCCTAGCTAATACAGATCCTTT  998
      |||| | ||||||||||||| ||||||||||||||| |||||||||||||
seq2  GGGAAATTATTACATTGATG-AGTGCTCGCCTAGCTTATACAGATCCTTT  999

seq1  A-CCTGCATTCTAAGAATATCAGTCTTTAGAAGGGACTTCTTTGCAACAT  1047
      | ||||||||||| ||   |||||||||||||||||| ||||||| ||| 
seq2  ACCCTGCATTCTAGGATATTCAGTCTTTAGAAGGGAC-TCTTTGC-ACA-  1046

seq1  TATGGGACTCAAAAAAATCCAAAGCACAGAAGAGTTGGGAAGATACTTAC  1097
      ||| |||||||||||||||||||||||||||||||  |||||||||||  
seq2  TATTGGACTCAAAAAAATCCAAAGCACAGAAGAGT--GGAAGATACTTTA  1094

seq1  TTTTACTTAGTA  1109
       |||||||||||
seq2  CTTTACTTAGTA  1106


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