BAC Information

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BAC

Clone NameB6Ng01-261C05
Chromosome5 (Build37)
Map Location 86,081,013 - 86,082,159
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261C05.bB6Ng01-261C05.g
ACCGA065883GA065884
length1,1431,206
definitionB6Ng01-261C05.b B6Ng01-261C05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagagaccaatatgattacatgcacatgaaaacacatacacta
tacaaatgaatgcatagtttctgatatcacaggctcaaagtttaatgagg
gacaaatgaacaatcaattagttatgatacagctcattttcactgaacat
atgcatataatgttaactatagacaatataacttgaaccaaatttcattg
tgtggcagtaaatacacagtactatttggtgcacacagacataaatattg
tgaagggaagcataggggtggcagtataggtactgagctagataagactg
gataaaagattgaactgataaagacagtaaaactactgtggaggcattga
caattcttgggcgagtagttgaagacagaagtttttttaaggaaataaaa
cgactgcagatactgtgagagaaagtttgagtcgtttgatattgcaagag
aagtaggctcatttaaagaatctgaaccttgagagaagccagatatcaaa
gcatcctggacttcctttgctgcttagaagaaagttgaacttctctttac
atcctaggcaaggcaggagaagagttatcacgttttcattgagaaaacat
atgtctggtaggtacaaagatgaactagagaaagacaatacagcaggaag
gtgtgagaaaagggtctcatcttggaaaaaccttagacttatagaataaa
tatggcagctacagtcaaactgaatcagagagaacaaagcacaaatgaag
tcaacaaattactagcttagggatccccttccaaatatatgtacagaatg
atagatagaagatataatatactgacattaggatcatttccaatattcac
tggtgttcctaacaaatattaaatacaaaaaatggatatgaagagaaatg
agggggaaccaggagtaatgtcagaagctgaaagaatgtaagataagaat
gactatatatcaagaaacaaagtattggggaataaaatcaggaccaatat
gtagagatgagatctggcagatagatcactggtggcctagtaacagctgt
gtcagaaaacagagtaagcagccgcagaagagcagctggcagaagggagg
gagaatgggacaagggttatcaccaaatgccagaaaaccctac

gaattcctgatctttccagaacttttttcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaactagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggatttttgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttagattcggttagcgagaattttattaagaatttttgc
atcgatattcataagagaagttggtctgaaattctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataatcttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttattatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgttccacttgggttgatttcacccctgagtttgattat
ttcctgccgtctactcctctttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctgcttgtatgtgctctctcccgtttctt
cttggaggcactcagagctatgagttttccttcttagaaatgctttcatt
tgtttcccaaggtttgtgtacgttgtggcttcattttcaattaacctcta
aagtctttatttctttctttattcctttctgacaggtatcattgagaaag
aagttggttgatcagttccagttaatgttggcctttcatactaatggtgt
taatgcagactcagctctaggccatcgtggtccgtgcgtgtgagtagccg
tgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86081013_86082159
seq2: B6Ng01-261C05.b_43_1185

seq1  GAATTCACAGAGACCAATATGATTACATGCACATGAAAACACATACACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGACCAATATGATTACATGCACATGAAAACACATACACTA  50

seq1  TACAAATGAATGCATAGTTTCTGATATCACAGGCTCAAAGTTTAATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGAATGCATAGTTTCTGATATCACAGGCTCAAAGTTTAATGAGG  100

seq1  GACAAATGAACAATCAATTAGTTATGATACAGCTCATTTTCACTGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGAACAATCAATTAGTTATGATACAGCTCATTTTCACTGAACAT  150

seq1  ATGCATATAATGTTAACTATAGACAATATAACTTGAACCAAATTTCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAATGTTAACTATAGACAATATAACTTGAACCAAATTTCATTG  200

seq1  TGTGGCAGTAAATACACAGTACTATTTGGTGCACACAGACATAAATATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGTAAATACACAGTACTATTTGGTGCACACAGACATAAATATTG  250

seq1  TGAAGGGAAGCATAGGGGTGGCAGTATAGGTACTGAGCTAGATAAGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAGCATAGGGGTGGCAGTATAGGTACTGAGCTAGATAAGACTG  300

seq1  GATAAAAGATTGAACTGATAAAGACAGTAAAACTACTGTGGAGGCATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGATTGAACTGATAAAGACAGTAAAACTACTGTGGAGGCATTGA  350

seq1  CAATTCTTGGGCGAGTAGTTGAAGACAGAAGTTTTTTTAAGGAAATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTGGGCGAGTAGTTGAAGACAGAAGTTTTTTTAAGGAAATAAAA  400

seq1  CGACTGCAGATACTGTGAGAGAAAGTTTGAGTCGTTTGATATTGCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCAGATACTGTGAGAGAAAGTTTGAGTCGTTTGATATTGCAAGAG  450

seq1  AAGTAGGCTCATTTAAAGAATCTGAACCTTGAGAGAAGCCAGATATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGCTCATTTAAAGAATCTGAACCTTGAGAGAAGCCAGATATCAAA  500

seq1  GCATCCTGGACTTCCTTTGCTGCTTAGAAGAAAGTTGAACTTCTCTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGGACTTCCTTTGCTGCTTAGAAGAAAGTTGAACTTCTCTTTAC  550

seq1  ATCCTAGGCAAGGCAGGAGAAGAGTTATCACGTTTTCATTGAGAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGCAAGGCAGGAGAAGAGTTATCACGTTTTCATTGAGAAAACAT  600

seq1  ATGTCTGGTAGGTACAAAGATGAACTAGAGAAAGACAATACAGCAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGTAGGTACAAAGATGAACTAGAGAAAGACAATACAGCAGGAAG  650

seq1  GTGTGAGAAAAGGGTCTCATCTTGGAAAAACCTTAGACTTATAGAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGAAAAGGGTCTCATCTTGGAAAAACCTTAGACTTATAGAATAAA  700

seq1  TATGGCAGCTACAGTCAAACTGAATCAGAGAGAACAAAGCACAAATGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGCTACAGTCAAACTGAATCAGAGAGAACAAAGCACAAATGAAG  750

seq1  TCAACAAATTACTAGCTTAGGGATCCCCTTCCAAATATATGTACAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAATTACTAGCTTAGGGATCCCCTTCCAAATATATGTACAGAATG  800

seq1  ATAGATAGAAGATATAATATACTGACATTAGGATCATTTCCAATATTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGAAGATATAATATACTGACATTAGGATCATTTCCAATATTCAC  850

seq1  TGGTGTTCCTAACAAATATTAAATACAAAAAATGGATATGAAGAGAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCCTAACAAATATTAAATACAAAAAATGGATATGAAGAGAAATG  900

seq1  AGGGGGAACCAGGAGTAATGTCAGAAGCTGAAAGAATGTAAGATAAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAACCAGGAGTAATGTCAGAAGCTGAAAGAATGTAAGATAAGAAT  950

seq1  GACTATAATATCAAGAAACAAAGTATTGGGGAATAAAATCAGGACCAATA  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAT-ATATCAAGAAACAAAGTATTGGGGAATAAAATCAGGACCAATA  999

seq1  TGTAGAGATGAGATCTGGCAGATAGATCACTGGTGGCCTAAGTAACAGCT  1050
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTAGAGATGAGATCTGGCAGATAGATCACTGGTGGCCT-AGTAACAGCT  1048

seq1  GTGTCAGGAAAACAGAGTAGGCAGCCGGCAG-AGAGCAGCTGGCAG-AGG  1098
      |||||| |||||||||||| |||||| |||| |||||||||||||| |||
seq2  GTGTCA-GAAAACAGAGTAAGCAGCC-GCAGAAGAGCAGCTGGCAGAAGG  1096

seq1  GAGGGAG-ATGGGAACCAAGGGTAAGGCACCAAATGCCCAGAGACCCTAC  1147
      ||||||| ||||||  ||||||| |  |||||||||||   | |||||||
seq2  GAGGGAGAATGGGA--CAAGGGTTA-TCACCAAATGCCAGAAAACCCTAC  1143


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