BAC Information

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BAC

Clone NameB6Ng01-261C16
Chromosome5 (Build37)
Map Location 83,607,834 - 83,714,693
singlet/doubletdoublet
Overlap geneSrd5a2l2
Upstream geneEG433912, LOC100039434
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261C16.bB6Ng01-261C16.g
ACCGA065903GA065904
length1,1571,206
definitionB6Ng01-261C16.b B6Ng01-261C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,607,834 - 83,608,987)(83,713,506 - 83,714,693)
sequence
gaattctcctaggaaaaatttaatcactaagttgattcattctctctcat
cattgaaaaaaatatgatagcagacttcctttgcattttgtgtgtttaga
ttgaagttattgcataactgtctttatcctgcataactgtaatcatgaat
aagacagattactatgtgaatctgtgcctctaagttgttagtgtacatca
atcatttccccaaaattataaacttgacattgcaatcatggcggtgacat
tttgcttatttttagatcttgtacttggaatctttgtgaagaattttgtg
gaagcatgaaagtacacacaagtggcccagcatgtctttggacttgtaaa
gacaaaaaaccaaaagcaaacaaaacaaacaaacaaacaaaaattagaag
agcaacaagatatttaaattcaaagtgcaaaagaatgttgtattggacag
aaaaaaaatatcatttaaaataaattcatactcttaactaaacaagaagt
ttattataaatgaaagttaatccatcatgttaagttttttactgaaaaaa
attttccttctttttacacttatttataagacacacacaagcgatttgcc
agcacatatgtatgtgtatcacatatatacctagtacacacagagctcag
aaaagagcattggatatcctggaagtagagtttacagatgattgtgaggt
tccatgtaggtgacatgaattcattccatagcctctgttagagaaactac
tgctctgaaccactgagtaatctcttcagccccctcagaaaatcatttca
agggccggccttctggaaggaaatttactcacttgtattactttctttcc
ttataggtttctcctctgctaaacaaacactcatcactgggctagattcc
ccatccccacatcaaagtgttaaagctttaattaaataaggaatataatt
ttttaaagatgtactttattattaagtacactgttgttgtcttcagacca
cacccagaaggagggccctcagatctcatatggtggttgtaagcccatca
tgtggtgttggattgaacctcagaccttctgagagctatcagtgcctctt
acctgcctgagtcatctgaccagccacagtatggaaacgacctaccaata
ttttctt

gaattcctgaagaaaagaactctcataagtaagtttcattcatgccagtg
cctgttctctactttctggggtctctaaactcaatgcgtggtgtttaaaa
ttcacaaaataatttgtgataattctatgaatttgcaaacaattaacata
ttgtataaactatgataacggggtggattctagaagcaaaagtgaaaaat
cttcctttgtttgaaatctgttgactggagtttctcctcctcctcttcct
cctaccccccctttccctcctcctggtgctactgctcctcctcctcctct
tcttcctcctcttcctcttcttcctcctcctcctcattttgtcctcctcc
ttctcctcctcttcttcctcctccttcttatccttcttcttctcctcctc
ttcctcctcctacgcctcctcctttaaaaaggcataatattgaacaacaa
aaactaagcacatccactcccacaattctgttttatacaatagtgattat
cagcttcttattccatattcattcatatattaactgaaaaattataggtt
attaaataattaatatcttgaaattattcagttgaataatgatcctaata
ttaacttccaataattaattttcctatgaaggattttatcaactcacaaa
ataatgattaaattttctttaaaattaattcaaatgtaaactccattaga
atttccacttactactcataatagctgcactgacttcatataaagagtaa
aatctatttttattttccaagaccatttaaattccaatcacataaaaatg
accgtgatattgttccttacgacattgccaccacaatgacaagatattag
gaatggtttgttttttgatgctcttctttctcacattttgtttttaccca
tttcttcatttttagctatgttatctgctacttacccaaccaaactgttc
ctcatttacctggttctgccttcattttgcttgtgctttcaaacacttgg
aaaaccaaggcttaatgacatgaagaatattatgcccacaactatgaggc
ctgcctctatatgcaaattaaccagaaagtgaacctgaacccaacaggta
tctagtgtgactcattgcataaaagctatgcttttgtaagttatgacctt
aaaactgtacattagatatatccgaaatctttagacctgcatatatacac
aatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83607834_83608987
seq2: B6Ng01-261C16.b_47_1203

seq1  GAATTCTCCTAGGAAAAATTTAATCACTAAGTTGATTCATTCTCTCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAGGAAAAATTTAATCACTAAGTTGATTCATTCTCTCTCAT  50

seq1  CATTGAAAAAAATATGATAGCAGACTTCCTTTGCATTTTGTGTGTTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAAAAAATATGATAGCAGACTTCCTTTGCATTTTGTGTGTTTAGA  100

seq1  TTGAAGTTATTGCATAACTGTCTTTATCCTGCATAACTGTAATCATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTATTGCATAACTGTCTTTATCCTGCATAACTGTAATCATGAAT  150

seq1  AAGACAGATTACTATGTGAATCTGTGCCTCTAAGTTGTTAGTGTACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATTACTATGTGAATCTGTGCCTCTAAGTTGTTAGTGTACATCA  200

seq1  ATCATTTCCCCAAAATTATAAACTTGACATTGCAATCATGGCGGTGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCCCCAAAATTATAAACTTGACATTGCAATCATGGCGGTGACAT  250

seq1  TTTGCTTATTTTTAGATCTTGTACTTGGAATCTTTGTGAAGAATTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATTTTTAGATCTTGTACTTGGAATCTTTGTGAAGAATTTTGTG  300

seq1  GAAGCATGAAAGTACACACAAGTGGCCCAGCATGTCTTTGGACTTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGAAAGTACACACAAGTGGCCCAGCATGTCTTTGGACTTGTAAA  350

seq1  GACAAAAAACCAAAAGCAAACAAAACAAACAAACAAACAAAAATTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAACCAAAAGCAAACAAAACAAACAAACAAACAAAAATTAGAAG  400

seq1  AGCAACAAGATATTTAAATTCAAAGTGCAAAAGAATGTTGTATTGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAAGATATTTAAATTCAAAGTGCAAAAGAATGTTGTATTGGACAG  450

seq1  AAAAAAAATATCATTTAAAATAAATTCATACTCTTAACTAAACAAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATATCATTTAAAATAAATTCATACTCTTAACTAAACAAGAAGT  500

seq1  TTATTATAAATGAAAGTTAATCCATCATGTTAAGTTTTTTACTGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAAATGAAAGTTAATCCATCATGTTAAGTTTTTTACTGAAAAAA  550

seq1  ATTTTCCTTCTTTTTACACTTATTTATAAGACACACACAAGCGATTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTCTTTTTACACTTATTTATAAGACACACACAAGCGATTTGCC  600

seq1  AGCACATATGTATGTGTATCACATATATACCTAGTACACACAGAGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATATGTATGTGTATCACATATATACCTAGTACACACAGAGCTCAG  650

seq1  AAAAGAGCATTGGATATCCTGGAAGTAGAGTTTACAGATGATTGTGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCATTGGATATCCTGGAAGTAGAGTTTACAGATGATTGTGAGGT  700

seq1  TCCATGTAGGTGACATGAATTCATTCCATAGCCTCTGTTAGAGAAACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAGGTGACATGAATTCATTCCATAGCCTCTGTTAGAGAAACTAC  750

seq1  TGCTCTGAACCACTGAGTAATCTCTTCAGCCCCCTCAGAAAATCATTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAACCACTGAGTAATCTCTTCAGCCCCCTCAGAAAATCATTTCA  800

seq1  AGGGCCGGCCTTCTGGAAGGAAATTTACTCACTTGTATTACTTTCTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCGGCCTTCTGGAAGGAAATTTACTCACTTGTATTACTTTCTTTCC  850

seq1  TTATAGGTTTCTCCTCTGCTAAACAAACACTCATCACTGGGCTAGATTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTTTCTCCTCTGCTAAACAAACACTCATCACTGGGCTAGATTCC  900

seq1  CCAT-CCCACATCAAAGTGTTAAAGCTTTAATT-AATAAGGAATATAATT  948
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATCCCCACATCAAAGTGTTAAAGCTTTAATTAAATAAGGAATATAATT  950

seq1  TTTTAAAGATGTAC-TTATTATTAAGTACACTGTTGTTGTCTTCAGA-CA  996
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  TTTTAAAGATGTACTTTATTATTAAGTACACTGTTGTTGTCTTCAGACCA  1000

seq1  CA-CCAGAA-GAGGG-CCTCAGATCTCATTATGGGTGGTTGTAAG-CCAT  1042
      || |||||| ||||| |||||||||||| ||| |||||||||||| ||||
seq2  CACCCAGAAGGAGGGCCCTCAGATCTCA-TAT-GGTGGTTGTAAGCCCAT  1048

seq1  CATGTGGTTGTTGGGATTTGAACTCAGGACCTTCTGAAGAGCTATCAGTG  1092
      ||||||| |||| |||||  | |||| ||||||||| |||||||||||||
seq2  CATGTGG-TGTT-GGATTGAACCTCA-GACCTTCTG-AGAGCTATCAGTG  1094

seq1  -CTCTTACCTG-CTGAGTCATCTGGCCAG-CACAGTATGGAATATTAAAC  1139
       |||||||||| |||||||||||| |||| |||||||||||  |   | |
seq2  CCTCTTACCTGCCTGAGTCATCTGACCAGCCACAGTATGGA--AACGACC  1142

seq1  TAACAATATTTTCTT  1154
      || ||||||||||||
seq2  TACCAATATTTTCTT  1157


seq1: chr5_83713506_83714693
seq2: B6Ng01-261C16.g_68_1273 (reverse)

seq1  CCTATTG----TATATACAG--CTAAAGAT---CGATTTAATACTAATGT  41
      |||||||    ||||| |||  ||||||||    ||| ||   |||||||
seq2  CCTATTGTGTATATATGCAGGTCTAAAGATTTCGGATATA--TCTAATGT  48

seq1  ACAG-TCTAAGTTCATTAACATACAAAAGCATAGCTTTTAATGCAATGA-  89
      |||| | |||| ||| |||| |||||||||||||||||| ||||||||| 
seq2  ACAGTTTTAAGGTCA-TAACTTACAAAAGCATAGCTTTT-ATGCAATGAG  96

seq1  TCACACTTAGATACCCTGTTGGTTTCA-GTTCACTTTCTGGGTTAATTGC  138
      |||||| |||||| |||||||| |||| ||||||||||| ||||||||  
seq2  TCACAC-TAGATA-CCTGTTGGGTTCAGGTTCACTTTCT-GGTTAATTTG  143

seq1  AATATAGA-GCA-GCCTCTAGGTTGT-GGCATAATAATTCTTCATTGTCA  185
       ||||||| ||| |||||   ||||| |||||||| |||||||| |||||
seq2  CATATAGAGGCAGGCCTCATAGTTGTGGGCATAAT-ATTCTTCA-TGTCA  191

seq1  TT-AGCC-TGGTTT--CCAGTGTTTGAAAGCAC-AGC-AAATGAA-GCAG  228
      || |||| ||||||  | ||||||||||||||| ||| ||||||| ||||
seq2  TTAAGCCTTGGTTTTCCAAGTGTTTGAAAGCACAAGCAAAATGAAGGCAG  241

seq1  AACCAGGTAAATGAGGAACAGTTTGGTTGGGTAAGTAGCAGATAACATAG  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTAAATGAGGAACAGTTTGGTTGGGTAAGTAGCAGATAACATAG  291

seq1  CTAAAAATGAAG-AATGGGTAAAAAC-AAATGTGAG-AAGAAGAGCATCA  325
      |||||||||||| ||||||||||||| ||||||||| |||||||||||||
seq2  CTAAAAATGAAGAAATGGGTAAAAACAAAATGTGAGAAAGAAGAGCATCA  341

seq1  AAAAACAAACCATTCCTTATATCTTGTCATTGTGGTGGCAATGTCGTAAG  375
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAACAAACCATTCCTAATATCTTGTCATTGTGGTGGCAATGTCGTAAG  391

seq1  GAACAATATCACGGTCA-TTTTATGTGATTGGAATTTAAATGGTCTTGGA  424
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAACAATATCACGGTCATTTTTATGTGATTGGAATTTAAATGGTCTTGGA  441

seq1  AAAT-AAAATAGATTTTACTCTTTATATGAAGTCAGTGCAGCTATTATGA  473
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAGATTTTACTCTTTATATGAAGTCAGTGCAGCTATTATGA  491

seq1  GTAGTAAGTGGAAATTCTAATGGAGTTTACATTTGAATTAATTTTAAAGA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAGTGGAAATTCTAATGGAGTTTACATTTGAATTAATTTTAAAGA  541

seq1  AAATTTAATCATTATTTTGTGAGTTGATAAAATCCTTCATAGGAAAATTA  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATCATTATTTTGTGAGTTGATAAAATCCTTCATAGGAAAATTA  591

seq1  ATTATTGGAAGTTAATATTAGGATCATTATTCAACTGAATAATTTCAAGA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGAAGTTAATATTAGGATCATTATTCAACTGAATAATTTCAAGA  641

seq1  TATTAATTATTTAATAACCTATAATTTTTCAGTTAATATATGAATGAATA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTATTTAATAACCTATAATTTTTCAGTTAATATATGAATGAATA  691

seq1  TGGAATAAGAAGCTGATAATCACTATTGTATAAAACAGAATTGTGGGAGT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAGAAGCTGATAATCACTATTGTATAAAACAGAATTGTGGGAGT  741

seq1  GGATGTGCTTAGTTTTTGTTGTTCAATATTATGCCTTTTTAAAGGAGGAG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCTTAGTTTTTGTTGTTCAATATTATGCCTTTTTAAAGGAGGAG  791

seq1  GCGTAGGAGGAGGAAGAGGAGGAGAAGAAGAAGGATAAGAAGGAGGAGGA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGGAGGAGGAAGAGGAGGAGAAGAAGAAGGATAAGAAGGAGGAGGA  841

seq1  AGAAGAGGAGGAGAAGGAGGAGGACAAAATGAGGAGGAGGAGGAAGAAGA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGAGGAGAAGGAGGAGGACAAAATGAGGAGGAGGAGGAAGAAGA  891

seq1  GGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGCAGTAGCACCAGGAGGAGG  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGCAGTAGCACCAGGAGGAGG  941

seq1  GAAAGGGGGGGTAGGAGGAAGAGGAGGAGGAGAAACTCCAGTCAACAGAT  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGGGGTAGGAGGAAGAGGAGGAGGAGAAACTCCAGTCAACAGAT  991

seq1  TTCAAACAAAGGAAGATTTTTCACTTTTGCTTCTAGAATCCACCCCGTTA  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAAAGGAAGATTTTTCACTTTTGCTTCTAGAATCCACCCCGTTA  1041

seq1  TCATAGTTTATACAATATGTTAATTGTTTGCAAATTCATAGAATTATCAC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTTATACAATATGTTAATTGTTTGCAAATTCATAGAATTATCAC  1091

seq1  AAATTATTTTGTGAATTTTAAACACCACGCATTGAGTTTAGAGACCCCAG  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTGTGAATTTTAAACACCACGCATTGAGTTTAGAGACCCCAG  1141

seq1  AAAGTAGAGAACAGGCACTGGCATGAATGAAACTTACTTATGAGAGTTCT  1173
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAGAACAGGCACTGGCATGAATGAAACTTACTTATGAGAGTTCT  1191

seq1  TTTCTTCAGGAATTC  1188
      |||||||||||||||
seq2  TTTCTTCAGGAATTC  1206


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