BAC Information

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BAC

Clone NameB6Ng01-261K16
Chromosome5 (Build37)
Map Location 55,307,456 - 55,308,515
singlet/doubletsinglet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261K16.bB6Ng01-261K16.g
ACCGA066277GA066278
length1,2011,066
definitionB6Ng01-261K16.b B6Ng01-261K16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaagatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaattcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
aacatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctatctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggattacagggctccca
atggagagctagagaaagtacccaaggagctaaagggaactgcaacccta
taggtgatcacattatgaactaaccagtaccccgagctcttgacctagct
gcatatgtatcaaagatggcctagtcgccatcactggaaagagaggtcat
gaccacaaacctttatatgccccagacagggacgccaggtcaaaatggga
ttgccgtagggaatgggttcctgatgcagatcaggagtgtcactgggtag
a
gaattctttgaaaaaatcaagaaaaagacaaatgaccaaaaaattaaata
tacaatataaatattaaataatacagaagtcaggtgtagtaaatacatga
atttttaattaaggggttatttgtcactaacatttgaactatatcattat
gcaatccaattatgattattttccataatgtactttttaaataacttatt
tttaactaaaaaatattttcttgcatttttctgtaaacaatgtatatata
tatatatatatatatatatatatatatatatatatatatactagagagaa
aatgggattcagattcataaggaagattggtacaatagtttctggctaca
ctatttgcattatactacttaattttatgccactaaatcctgcttaacta
atagtgaagctggctcatttaagagaatgtactaaagaatattccacaat
aaaatgcatacagataattctccacataaatattgaatacctatttaata
gctaactatttctcaatacacgtaagttatattttcaatgattcataatc
agtagatcaaatattaaatacattttctagttcagcataaagtcaggtcg
tattcatggatactataaatatattcctagtgcaactgaagtgcagaaac
atgtagaatcttattgtaaactgaatataaataaacaaaaatcaaattgt
tcataaaacagttacagaatctacaagtggattgaggaattttaaattct
aactctttaacacaaaaagtcagcaaatttctatggtcatctctttcctt
tcacctgtgttatgcaaattattacagcttctagaccttattaaatttcc
aaaactcccctaagagctaaacaatgaagctttacgagacccctacttat
ttttcagatgacttttataatcagcatgattttaataagtcatctttatt
atgtgacttaatctgtttatcctgctataaacattctttttttttctaga
atatgtcttgttctttctctgactatggagattaaactcctgccttataa
tgagtattgggtaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55307456_55308515
seq2: B6Ng01-261K16.g_65_1130

seq1  GAATTCTTTGAAAAAATCAAGAAAAAGACAAATGACCAAAAAATTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAAAAAATCAAGAAAAAGACAAATGACCAAAAAATTAAATA  50

seq1  TACAATATAAATATTAAATAATACAGAAGTCAGGTGTAGTAAATACATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATAAATATTAAATAATACAGAAGTCAGGTGTAGTAAATACATGA  100

seq1  ATTTTTAATTAAGGGGTTATTTGTCACTAACATTTGAACTATATCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTAAGGGGTTATTTGTCACTAACATTTGAACTATATCATTAT  150

seq1  GCAATCCAATTATGATTATTTTCCATAATGTACTTTTTAAATAACTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCAATTATGATTATTTTCCATAATGTACTTTTTAAATAACTTATT  200

seq1  TTTAACTAAAAAATATTTTCTTGCATTTTTCTGTAAACAATGTATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTAAAAAATATTTTCTTGCATTTTTCTGTAAACAATGTATATATA  250

seq1  TATATATATATATATATATATATATATATATATATATATACTAGAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATACTAGAGAGAA  300

seq1  AATGGGATTCAGATTCATAAGGAAGATTGGTACAATAGTTTCTGGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATTCAGATTCATAAGGAAGATTGGTACAATAGTTTCTGGCTACA  350

seq1  CTATTTGCATTATACTACTTAATTTTATGCCACTAAATCCTGCTTAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCATTATACTACTTAATTTTATGCCACTAAATCCTGCTTAACTA  400

seq1  ATAGTGAAGCTGGCTCATTTAAGAGAATGTACTAAAGAATATTCCACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAGCTGGCTCATTTAAGAGAATGTACTAAAGAATATTCCACAAT  450

seq1  AAAATGCATACAGATAATTCTCCACATAAATATTGAATACCTATTTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATACAGATAATTCTCCACATAAATATTGAATACCTATTTAATA  500

seq1  GCTAACTATTTCTCAATACACGTAAGTTATATTTTCAATGATTCATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTATTTCTCAATACACGTAAGTTATATTTTCAATGATTCATAATC  550

seq1  AGTAGATCAAATATTAAATACATTTTCTAGTTCAGCATAAAGTCAGGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCAAATATTAAATACATTTTCTAGTTCAGCATAAAGTCAGGTCG  600

seq1  TATTCATGGATACTATAAATATATTCCTAGTGCAACTGAAGTGCAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGGATACTATAAATATATTCCTAGTGCAACTGAAGTGCAGAAAC  650

seq1  ATGTAGAATCTTATTGTAAACTGAATATAAATAAACAAAAATCAAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAATCTTATTGTAAACTGAATATAAATAAACAAAAATCAAATTGT  700

seq1  TCATAAAACAGTTACAGAATCTACAAGTGGATTGAGGAATTTTAAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAACAGTTACAGAATCTACAAGTGGATTGAGGAATTTTAAATTCT  750

seq1  AACTCTTTAACACAAAAAGTCAGCAAA-TTCTATGGTCATCTC-TTCCTT  798
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  AACTCTTTAACACAAAAAGTCAGCAAATTTCTATGGTCATCTCTTTCCTT  800

seq1  TCACCTGTGTTATGC-AATTATTACAGCTTCTAGACCTTATTAAATTTCC  847
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCACCTGTGTTATGCAAATTATTACAGCTTCTAGACCTTATTAAATTTCC  850

seq1  AAAACTCCCCTAAGAGCTAAACAATGAAGCTTTACGAGACCCCTACTTA-  896
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAACTCCCCTAAGAGCTAAACAATGAAGCTTTACGAGACCCCTACTTAT  900

seq1  TTTTCAGATGACTTTTATAATCAGCATGATTTTAATAAGTCATCTTTATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGATGACTTTTATAATCAGCATGATTTTAATAAGTCATCTTTATT  950

seq1  ATGTGACTTAATCTGTTTTATCCTGCTATAAACATTCTTTTTTTTTCTAG  996
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTAATCTG-TTTATCCTGCTATAAACATTCTTTTTTTTTCTAG  999

seq1  -ATATGTCTTGTTCTTTCTCTGACTATGGAGATTAAACT-CTG-CTTAT-  1042
       |||||||||||||||||||||||||||||||||||||| ||| ||||| 
seq2  AATATGTCTTGTTCTTTCTCTGACTATGGAGATTAAACTCCTGCCTTATA  1049

seq1  ATGAGTATTTGGGTAAGA  1060
      ||||||| ||||||||||
seq2  ATGAGTA-TTGGGTAAGA  1066