BAC Information

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BAC

Clone NameB6Ng01-261L12
Chromosome5 (Build37)
Map Location 50,858,201 - 51,008,228
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261L12.bB6Ng01-261L12.g
ACCGA066317GA066318
length1,1451,104
definitionB6Ng01-261L12.b B6Ng01-261L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,858,201 - 50,859,033)(51,007,120 - 51,008,228)
sequence
gaattcttacaagtttgtttccacatctggtgtcttgcaaatgcccttcc
aattctaggggatctgttgccctcttctggactctgtggacacttgcact
tctgtgggcataccctcaacataaaacacacacacacacacacatacata
tttcagaattaaaaatatcttttaaagactttaaataattctttattgaa
tgtttaatattaattaataaattaattaatttactttacattctgattgc
agcttcctctcccttgtctcacccctctcacctcttgtggtgatttgaat
atgctaggcccataggaagtggtactattgggagatgtggcctgattgga
ggaggtgtggccttgatagaggaagtgtttcactcttggggtgttctttg
aggctcctatgcttaggatccactgagtgtagagtgagagtctccttttg
actgccaacagttcaagatgtagcgctctcagctcttcctcaagcacaat
agcatgctttccactatgataatggactgaacctctgatactgtaagcta
gagctacctaaatatttgcttttataagagttgccttagtcatggtatct
tttcacagcaatgaaaccctaactaagacacctctctcatctctgtctcc
tcttctcccttactccttagagaaggggagacatcccaaggatattaacc
acaccccatacccccgggacataaagttgcagtagaattggatgcttctt
atcaattgaggctaaataagacatctcagttaggggaaagggatccaagg
ccaggcagcagaatcagatcatatcccttcctattttctacatactattt
tatctcaagtctccatatttttcttttttctttgtatatttataaaaagg
gttatagtggttttaggttttgtttttctgagagtgacaaataatggtat
ctgtggcatgtgtgtgcctcccctttcaccccagaattcaggtatttttg
tgtgacgaggtaaagacatgattatccaggagggcttgtttcttagaata
ggattagggcattttcagagattcatgcaatgttgcccagtctttgtctt
ggctccatccaatgtaagcctataccgaaggtcttgatgatgctg
gaattccttgctaaaaaatatctaaaacaggggatttttagttctcagtt
aaagtatccatccaagggaagaacaaggcaatgaggacaggtgtcaaggt
caataccattgctcagttgtgaactttggttaatattttcagccattcta
tttataacttaaaatatccaactgctgccgttcgaaaactcagatttggc
ttttctggtgtgtatgcagtgtttgggtttttttttttcccccaatggtg
tccccaagtgaacttgaattcattaaagagattcaaatccactttcttgt
tgactcttcatcatatcggaagatgcagatgtgaatgacaaaagaaacag
gcttggcatgatcctcacaaacgtgtacatcccaaaacacagctcataaa
aagcattgtcagctcgcagagaggaaataggcacaaaagggaacaggtat
aagaagaaatgtgttgctggtttgtttacatatctaatcgtcctgaaatt
agtagatagctcttttcctggatcgttttctctatcagcttcaagccgtc
tgtatatcttgcatcataattgctatgcatgggccttattctgaacagaa
atcattgccatgagggaaccttattctgaatgacgttcattgcctggttt
tattcctagcttcctgggtgaatactgctacaaaacaatacaagaatgta
caccataaacagtgtttcagaactctgttcgctgatcttgggctaggata
aatcaacaaaggtagagaggtgctgattaaaaggcacacttcaatggaaa
attatttcaaagccgagattaatagaaactgctcaactaaaaagatctag
ggacccgggggaaaattataattcatgcaataatatgagaaatgacaatg
catctttcattctgtaataatatcaataatatacatattttcatttataa
cttagctttcatctatactttcatagccttgatcattctcactttttttt
tttctaaaatgggactagttttaatctatttaccatgaatgcttctgtgt
tcccagagattactgacagcaagtctatgagcataatgtcaggcagttct
gaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50858201_50859033
seq2: B6Ng01-261L12.b_368_1190

seq1  TACTATTGGGAGATGTGGCCTGATTGGAGGAGGTGTGGCCTTGATAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGGGAGATGTGGCCTGATTGGAGGAGGTGTGGCCTTGATAGAGG  50

seq1  AAGTGTTTCACTCTTGGGGTGTTCTTTGAGGCTCCTATGCTTAGGATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTCACTCTTGGGGTGTTCTTTGAGGCTCCTATGCTTAGGATCCA  100

seq1  CTGAGTGTAGAGTGAGAGTCTCCTTTTGACTGCCAACAGTTCAAGATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTAGAGTGAGAGTCTCCTTTTGACTGCCAACAGTTCAAGATGTA  150

seq1  GCGCTCTCAGCTCTTCCTCAAGCACAATAGCATGCTTTCCACTATGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCTCAGCTCTTCCTCAAGCACAATAGCATGCTTTCCACTATGATAA  200

seq1  TGGACTGAACCTCTGATACTGTAAGCTAGAGCTACCTAAATATTTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGAACCTCTGATACTGTAAGCTAGAGCTACCTAAATATTTGCTTT  250

seq1  TATAAGAGTTGCCTTAGTCATGGTATCTTTTCACAGCAATGAAACCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGTTGCCTTAGTCATGGTATCTTTTCACAGCAATGAAACCCTAA  300

seq1  CTAAGACACCTCTCTCATCTCTGTCTCCTCTTCTCCCTTACTCCTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACACCTCTCTCATCTCTGTCTCCTCTTCTCCCTTACTCCTTAGAG  350

seq1  AAGGGGAGACATCCCAAGGATATTAACCACACCCCATACCCCCGGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGACATCCCAAGGATATTAACCACACCCCATACCCCCGGGACAT  400

seq1  AAAGTTGCAGTAGAATTGGATGCTTCTTATCAATTGAGGCTAAATAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGCAGTAGAATTGGATGCTTCTTATCAATTGAGGCTAAATAAGAC  450

seq1  ATCTCAGTTAGGGGAAAGGGATCCAAGGCCAGGCAGCAGAATCAGATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTAGGGGAAAGGGATCCAAGGCCAGGCAGCAGAATCAGATCAT  500

seq1  ATCCCTTCCTATTTTCTACATACTATTTTATCTCAAGTCTCCATATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCCTATTTTCTACATACTATTTTATCTCAAGTCTCCATATTTTT  550

seq1  CTTTTTTCTTTGTATATTTATAAAAAGGGTTATAGTGGTTTTAGGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTTGTATATTTATAAAAAGGGTTATAGTGGTTTTAGGTTTTG  600

seq1  TTTTTCTGAGAGTGACAAAATAATGGTATCTGTGGCATGTGTGTGCCTCC  650
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGAGTGAC-AAATAATGGTATCTGTGGCATGTGTGTGCCTCC  649

seq1  CCTTTCACCCCAGAATTCAGGTATTTTGGTGTGACGAGGTAAAGACATGA  700
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTTTCACCCCAGAATTCAGGTATTTTTGTGTGACGAGGTAAAGACATGA  699

seq1  TTATCCCAGGAGGGCTTGTTTCTTAAGAATAGGATTAGGGCATTTTCAAG  750
      |||| ||||||||||||||||||| |||||||||||||||||||||||  
seq2  TTAT-CCAGGAGGGCTTGTTTCTT-AGAATAGGATTAGGGCATTTTCA--  745

seq1  GAGGATTCATGCAATGTGCCCAAGTCTTGTCCTTGGGCTTCCATCC-ATG  799
      || ||||||||||||||  || ||||||   |||||   ||||||| |||
seq2  GA-GATTCATGCAATGTTGCCCAGTCTTTGTCTTGG--CTCCATCCAATG  792

seq1  TAAGGCTATACCAGAAGTCCTTTAAATGATGCTG  833
      |||| ||||||| ||||  |||   |||||||||
seq2  TAAGCCTATACC-GAAGGTCTT--GATGATGCTG  823

seq1: chr5_51007120_51008228
seq2: B6Ng01-261L12.g_69_1172 (reverse)

seq1  TTTCAGAACTTGCTTGGACAATTATGCTCATAGAACCTGCTGTCAGTATT  50
      ||||||||||  ||  ||| ||||||||||||| || ||||||||||| |
seq2  TTTCAGAACTGCCT--GAC-ATTATGCTCATAG-ACTTGCTGTCAGTAAT  46

seq1  CTCTGGGAACCACAGAAGCA-TCATGGTAAATAGATT-AAACTAGTCCAT  98
      ||||||||| |||||||||| |||||||||||||||| ||||||||||  
seq2  CTCTGGGAA-CACAGAAGCATTCATGGTAAATAGATTAAAACTAGTCCCA  95

seq1  TTTTAG-AAAAAAAAAAGTGAGAATGATCAAGGCTATGAAAAGTATAGAT  147
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTAGAAAAAAAAAAAGTGAGAATGATCAAGGCTATG-AAAGTATAGAT  144

seq1  GAAAGCTAAG-TATAAATGAAAATATGTATTATTATTGATATTATTACAG  196
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GAAAGCTAAGTTATAAATGAAAATATGTA-TATTATTGATATTATTACAG  193

seq1  AATGAAAGATTGCATTGTCATTTTCTCATATTATTGCATGAATTATAATT  246
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  AATGAAAGA-TGCATTGTCA-TTTCTCATATTATTGCATGAATTATAATT  241

seq1  TTCCCCCGGGTCCCTAGATCTTTTTAGTTGAGCAGTTTCTATTAATCTCG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCGGGTCCCTAGATCTTTTTAGTTGAGCAGTTTCTATTAATCTCG  291

seq1  GCTTTGAAATAATTTTCCATTGAAGTGTGCCTTTTAATCAGCACCTCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAATAATTTTCCATTGAAGTGTGCCTTTTAATCAGCACCTCTCT  341

seq1  ACCTTTGTTGATTTATCCTAGCCCAAGATCAGCGAACAGAGTTCTGAAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTTGATTTATCCTAGCCCAAGATCAGCGAACAGAGTTCTGAAAC  391

seq1  ACTGTTTATGGTGTACATTCTTGTATTGTTTTGTAGCAGTATTCACCCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTATGGTGTACATTCTTGTATTGTTTTGTAGCAGTATTCACCCAG  441

seq1  GAAGCTAGGAATAAAACCAGGCAATGAACGTCATTCAGAATAAGGTTCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGGAATAAAACCAGGCAATGAACGTCATTCAGAATAAGGTTCCC  491

seq1  TCATGGCAATGATTTCTGTTCAGAATAAGGCCCATGCATAGCAATTATGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAATGATTTCTGTTCAGAATAAGGCCCATGCATAGCAATTATGA  541

seq1  TGCAAGATATACAGACGGCTTGAAGCTGATAGAGAAAACGATCCAGGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATATACAGACGGCTTGAAGCTGATAGAGAAAACGATCCAGGAAA  591

seq1  AGAGCTATCTACTAATTTCAGGACGATTAGATATGTAAACAAACCAGCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATCTACTAATTTCAGGACGATTAGATATGTAAACAAACCAGCAA  641

seq1  CACATTTCTTCTTATACCTGTTCCCTTTTGTGCCTATTTCCTCTCTGCGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCTTCTTATACCTGTTCCCTTTTGTGCCTATTTCCTCTCTGCGA  691

seq1  GCTGACAATGCTTTTTATGAGCTGTGTTTTGGGATGTACACGTTTGTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAATGCTTTTTATGAGCTGTGTTTTGGGATGTACACGTTTGTGAG  741

seq1  GATCATGCCAAGCCTGTTTCTTTTGTCATTCACATCTGCATCTTCCGATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGCCAAGCCTGTTTCTTTTGTCATTCACATCTGCATCTTCCGATA  791

seq1  TGATGAAGAGTCAACAAGAAAGTGGATTTGAATCTCTTTAATGAATTCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGAGTCAACAAGAAAGTGGATTTGAATCTCTTTAATGAATTCAA  841

seq1  GTTCACTTGGGGACACCATTGGGGGAAAAAAAAAAACCCAAACACTGCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTGGGGACACCATTGGGGGAAAAAAAAAAACCCAAACACTGCAT  891

seq1  ACACACCAGAAAAGCCAAATCTGAGTTTTCGAACGGCAGCAGTTGGATAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGAAAAGCCAAATCTGAGTTTTCGAACGGCAGCAGTTGGATAT  941

seq1  TTTAAGTTATAAATAGAATGGCTGAAAATATTAACCAAAGTTCACAACTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTATAAATAGAATGGCTGAAAATATTAACCAAAGTTCACAACTG  991

seq1  AGCAATGGTATTGACCTTGACACCTGTCCTCATTGCCTTGTTCTTCCCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGTATTGACCTTGACACCTGTCCTCATTGCCTTGTTCTTCCCTT  1041

seq1  GGATGGATACTTTAACTGAGAACTAAAAATCCCCTGTTTTAGATATTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATACTTTAACTGAGAACTAAAAATCCCCTGTTTTAGATATTTTT  1091

seq1  TAGCAAGGAATTC  1109
      |||||||||||||
seq2  TAGCAAGGAATTC  1104