BAC Information

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BAC

Clone NameB6Ng01-261O23
Chromosome5 (Build37)
Map Location 40,022,918 - 40,023,946
singlet/doubletsinglet
Overlap geneHs3st1
Upstream gene6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261O23.bB6Ng01-261O23.g
ACCGA066483GA066484
length1,036727
definitionB6Ng01-261O23.b B6Ng01-261O23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaaaccctttagatttccccaatagttcctagccatcaaaaa
ttagcccacaggtaaataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgaatacaaatataataggaaactgaggcacagaggcattcgaaacaatg
aaagcagaaaattaattgtcaatggaaagctcaaattgatctctctttga
gcaactattatagctgtgtttgtacagggcaggcagtgattgatcaggct
gaacttcataacttcttttttattgctatcttcagctaaaatacagatct
tttatctgtctgctttcctctcttcccctcagctggctctataacatttg
caaccattcacagtcttcaatatttccccttgttagtctttcctgatgtc
ctgggcaatctttacaaaactcagagataaacaaactcccctgtcccctg
gtgcaatgggaaatctcagaaactgcagtgttatatgtttagacatagtt
gtgatctcataccaggacatatgcaaggtacagatgccaccttgggaacg
taaaccacttctctcttccttggctattcactcataatttcaatttatac
aattctctttgcgcatttatttaatattaaatctatttcaggagatggag
ttatagagtatggggaatttgccaaaagacgcccctatagcccagcagac
tattgttggtacataataactgttgaatgaaaacaccagagaacctgcta
cccgccttttcagtcttcatgattaagtgcaatgatgcatttaatggtga
ttttaatgacagtccatttaattagttggagcatttaatgcatatagtag
gtgtgtaaattgttctctcttcttgttctgttttgcctttaaaaagtgaa
agtattaatgagcttccaagtttgggcagctggtgtgtccactgaaatcc
ctccccacttcaatttctgagtctaataaagggagccctggtggattttc
cgctcattgaatcagggcccatgagttatcctccac

gaattcactgcagggtaatggttgaggatgattggttgaagattctgcaa
tcaaagtagtgaagatcagggataagaagccaagtctgtgtatacccaga
gctgttgacttccatagagaagacacagtgaagataattcaactgtagtc
cagagttatagttttaggagatatatttccataagtgcaatgctttattt
attttagtgtactgtaaatttgtgattgacatacctatcagttttacata
tttatgggctatagtgatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatagagagagagagaggtgg
gtatatatataacaaaaagtaaacataaatatatatatatatatatatat
atatatatatatatatacacactcacactgtcggtctgtcgtgtgttttt
gcgtgcgcgtgcgctcgctagggaggtggctatatatatgtgcacacaca
cacatatacatctctctatctctctctagatctttctctctctctctatc
tatacacccccacccgcaccccgatacacatacatgtacatacatagata
gatacacatacatacggatagacgcgcgcgggggcgggaggccggcaagc
gagcgagatagagagagaaaatatatatatatataagagacagatcccca
cacgccatcccccgctttttccttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40022918_40023946
seq2: B6Ng01-261O23.b_49_1084 (reverse)

seq1  GTGG-GGAT-ACTCAT-GGCCCTGA-TCCATGTGGCGAAAATC--ACAGG  44
      |||| |||| |||||| |||||||| || ||| |  |||||||   ||||
seq2  GTGGAGGATAACTCATGGGCCCTGATTCAATGAGCGGAAAATCCACCAGG  50

seq1  GCTCCCTTTATTAGACTACAGAAAATGAAGTGGGGAGGGATTTCAGTGGA  94
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  GCTCCCTTTATTAGACT-CAGAAATTGAAGTGGGGAGGGATTTCAGTGGA  99

seq1  CACACCAGCTGCCC-AACTTGGAAGCTCATTAATACTTTCACTTTTTAAA  143
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACACCAGCTGCCCAAACTTGGAAGCTCATTAATACTTTCACTTTTTAAA  149

seq1  GGCAAAACAGAACAAGAAGAGAGAAC-ATTTACACACCTACTATATGCAT  192
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCAAAACAGAACAAGAAGAGAGAACAATTTACACACCTACTATATGCAT  199

seq1  TAAATGCTCCAACTAATTAAATGGACTGTCATTAAAATCACCATTAAATG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTCCAACTAATTAAATGGACTGTCATTAAAATCACCATTAAATG  249

seq1  CATCATTGCACTTAATCATGAAGACTGAAAAGGCGGGTAGCAGGTTCTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGCACTTAATCATGAAGACTGAAAAGGCGGGTAGCAGGTTCTCT  299

seq1  GGTGTTTTCATTCAACAGTTATTATGTACCAACAATAGTCTGCTGGGCTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTCATTCAACAGTTATTATGTACCAACAATAGTCTGCTGGGCTA  349

seq1  TAGGGGCGTCTTTTGGCAAATTCCCCATACTCTATAACTCCATCTCCTGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCGTCTTTTGGCAAATTCCCCATACTCTATAACTCCATCTCCTGA  399

seq1  AATAGATTTAATATTAAATAAATGCGCAAAGAGAATTGTATAAATTGAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTAATATTAAATAAATGCGCAAAGAGAATTGTATAAATTGAAA  449

seq1  TTATGAGTGAATAGCCAAGGAAGAGAGAAGTGGTTTACGTTCCCAAGGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTGAATAGCCAAGGAAGAGAGAAGTGGTTTACGTTCCCAAGGTG  499

seq1  GCATCTGTACCTTGCATATGTCCTGGTATGAGATCACAACTATGTCTAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTACCTTGCATATGTCCTGGTATGAGATCACAACTATGTCTAAA  549

seq1  CATATAACACTGCAGTTTCTGAGATTTCCCATTGCACCAGGGGACAGGGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACACTGCAGTTTCTGAGATTTCCCATTGCACCAGGGGACAGGGG  599

seq1  AGTTTGTTTATCTCTGAGTTTTGTAAAGATTGCCCAGGACATCAGGAAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTATCTCTGAGTTTTGTAAAGATTGCCCAGGACATCAGGAAAG  649

seq1  ACTAACAAGGGGAAATATTGAAGACTGTGAATGGTTGCAAATGTTATAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAAGGGGAAATATTGAAGACTGTGAATGGTTGCAAATGTTATAGA  699

seq1  GCCAGCTGAGGGGAAGAGAGGAAAGCAGACAGATAAAAGATCTGTATTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGAGGGGAAGAGAGGAAAGCAGACAGATAAAAGATCTGTATTTT  749

seq1  AGCTGAAGATAGCAATAAAAAAGAAGTTATGAAGTTCAGCCTGATCAATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGATAGCAATAAAAAAGAAGTTATGAAGTTCAGCCTGATCAATC  799

seq1  ACTGCCTGCCCTGTACAAACACAGCTATAATAGTTGCTCAAAGAGAGATC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGCCCTGTACAAACACAGCTATAATAGTTGCTCAAAGAGAGATC  849

seq1  AATTTGAGCTTTCCATTGACAATTAATTTTCTGCTTTCATTGTTTCGAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGCTTTCCATTGACAATTAATTTTCTGCTTTCATTGTTTCGAAT  899

seq1  GCCTCTGTGCCTCAGTTTCCTATTATATTTGTATTCACACACACACACAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTGCCTCAGTTTCCTATTATATTTGTATTCACACACACACACAC  949

seq1  ACACACACACACACACACCTATTTACCTGTGGGCTAATTTTTGATGGCTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACCTATTTACCTGTGGGCTAATTTTTGATGGCTA  999

seq1  GGAACTATTGGGGAAATCTAAAGGGTTTTGAGAATTC  1029
      |||||||||||||||||||||||||||||||||||||
seq2  GGAACTATTGGGGAAATCTAAAGGGTTTTGAGAATTC  1036


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